Introduction

The following document is a summary of the analysis method of RNASeq data generated from transdifferentiated fibroblasts from individuals with DEE due to variants in CHD2 or SCN2A.
The samples consist of differeing numbers of biological replicates of each genotype (WT = 4, SCN2A =3 and CHD2 =2) extracted from cultured cells as fibroblasts then days 10, 22 and 28. Sample libraries were prepared for sequencing by the service provider (SAGC) using the ribosomal reduction, mRNA enrichment according to the maufacturers protocol (Nugen Universal Plus Total RNA-seq protocol (Part No. 15044223 Rev. B).). Strand-specific sequencing was carried by SAGC in two batches on MGI-T7 and MGI-G400 platforms respectively using a 2 x 150 bp, paired end read strategy. Prior to differential gene expression analysis, RNAseq data were psuedo-mapped to the ENSEMBL v84 set of human transcripts using the Salmon pipeline refer to our protocol document and git repository for details.

Set up the environment

This sets up paths to files, imports metadata associated with the samples and defines sample groups for the QC and statistical tests.

counts_dir = "data/salmon"
ExperimentName = "RNASeq.DEE.iNeuron.10.2024"
pdataFile = "data/metadata/pdata.csv"
sampleList = "data/metadata/sampleOrder.txt"
EpilepsyGenes = "data/reference/EpilepsyGenes_v2024-09.tsv"

Load required libraries

These are loaded up front so you know what the requirements are to run the script.

library(dplyr)
library(reshape2)
library(tximeta)
library(SummarizedExperiment)
library(edgeR)
library(RColorBrewer)
library(ggplot2)
library(pheatmap)
library(VennDiagram)
library(rtracklayer)
library(biomaRt)

Import sample metadata.

An independent file is set up pdata.csv which contains information about the samples; pdata is short for phenotypic data. Generally the more information the better, e.g. cell type, differentiation state, batches, RIN scores, sex, species, etc.

pdata<-read.table(file=pdataFile, header=TRUE, sep=",", as.is = FALSE)
rownames(pdata)<-pdata[,"sampleCode"] # set row names to sample names
pdata.current<-pdata # sometimes you want to throw out a sample or use a subset.  designating pdata.current allows you to temporarily change this without altering your original pdata table
samples<-as.character(pdata.current$sampleCode)
quantFiles <- file.path(counts_dir, pdata.current$folder,"quant.sf")
pdata.current <- data.frame(files = quantFiles, names = samples, pdata.current) # sets the format specifically required by tximeta
kbl(pdata.current) %>%
  kable_styling(bootstrap_options = c("striped", "hover", "condensed")) %>%
  scroll_box(width = "100%", height = "300px")
files names sampleCode folder individual timepoint diffState sex batch genotype replicate RIN
CON_1_FB data/salmon/8YC-FB-24-05549/quant.sf CON_1_FB CON_1_FB 8YC-FB-24-05549 8YC day_0 fibroblast F SAGCQR1262 WT 1 9.9
CON_1_d10 data/salmon/8YC-10-24-05558/quant.sf CON_1_d10 CON_1_d10 8YC-10-24-05558 8YC day_10 day_10 F SAGCQR1262 WT 1 9.9
CON_1_d22 data/salmon/8YC_22/quant.sf CON_1_d22 CON_1_d22 8YC_22 8YC day_22 day_22 F SAGCQR1293 WT 1 9.8
CON_2_FB data/salmon/FC45-FB-24-05548/quant.sf CON_2_FB CON_2_FB FC45-FB-24-05548 FC45 day_0 fibroblast F SAGCQR1262 WT 1 9.6
CON_2_d10 data/salmon/FC45-10-24-05557/quant.sf CON_2_d10 CON_2_d10 FC45-10-24-05557 FC45 day_10 day_10 F SAGCQR1262 WT 1 9.9
CON_2_d22 data/salmon/FC45_22/quant.sf CON_2_d22 CON_2_d22 FC45_22 FC45 day_22 day_22 F SAGCQR1293 WT 1 10.0
CON_2_d28 data/salmon/FC45_28/quant.sf CON_2_d28 CON_2_d28 FC45_28 FC45 day_28 day_28 F SAGCQR1293 WT 1 10.0
CON_3_FB_A data/salmon/MC2936-FB-24-05546/quant.sf CON_3_FB_A CON_3_FB_A MC2936-FB-24-05546 MC2936 day_0 fibroblast M SAGCQR1262 WT 1 8.9
CON_3_FB_B data/salmon/MC2936_FB/quant.sf CON_3_FB_B CON_3_FB_B MC2936_FB MC2936 day_0 fibroblast M SAGCQR1293 WT 2 10.0
CON_3_d10 data/salmon/MC2936-10-24-05555/quant.sf CON_3_d10 CON_3_d10 MC2936-10-24-05555 MC2936 day_10 day_10 M SAGCQR1262 WT 1 9.7
CON_3_d22 data/salmon/MC2936_22/quant.sf CON_3_d22 CON_3_d22 MC2936_22 MC2936 day_22 day_22 M SAGCQR1293 WT 1 9.8
CON_3_d28 data/salmon/MC2936_28/quant.sf CON_3_d28 CON_3_d28 MC2936_28 MC2936 day_28 day_28 M SAGCQR1293 WT 1 9.7
CON_4_FB_A data/salmon/MC44-FB-24-05547/quant.sf CON_4_FB_A CON_4_FB_A MC44-FB-24-05547 MC44 day_0 fibroblast M SAGCQR1262 WT 1 9.8
CON_4_FB_B data/salmon/MC44_FB/quant.sf CON_4_FB_B CON_4_FB_B MC44_FB MC44 day_0 fibroblast M SAGCQR1293 WT 2 10.0
CON_4_d10 data/salmon/MC44-10-24-05556/quant.sf CON_4_d10 CON_4_d10 MC44-10-24-05556 MC44 day_10 day_10 M SAGCQR1262 WT 1 10.0
CON_4_d22 data/salmon/MC44_22/quant.sf CON_4_d22 CON_4_d22 MC44_22 MC44 day_22 day_22 M SAGCQR1293 WT 1 10.0
SCN2A_1_FB data/salmon/61103MS-FB-24-05542/quant.sf SCN2A_1_FB SCN2A_1_FB 61103MS-FB-24-05542 61103 day_0 fibroblast M SAGCQR1262 SCN2A 1 9.6
SCN2A_1_d10 data/salmon/61103MS-10-24-05551/quant.sf SCN2A_1_d10 SCN2A_1_d10 61103MS-10-24-05551 61103 day_10 day_10 M SAGCQR1262 SCN2A 1 9.9
SCN2A_1_d22 data/salmon/61103MS_22/quant.sf SCN2A_1_d22 SCN2A_1_d22 61103MS_22 61103 day_22 day_22 M SAGCQR1293 SCN2A 1 9.9
SCN2A_1_d28 data/salmon/61103MS_28/quant.sf SCN2A_1_d28 SCN2A_1_d28 61103MS_28 61103 day_28 day_28 M SAGCQR1293 SCN2A 1 9.8
SCN2A_2_FB data/salmon/61107AM-FB-24-05541/quant.sf SCN2A_2_FB SCN2A_2_FB 61107AM-FB-24-05541 61107 day_0 fibroblast F SAGCQR1262 SCN2A 1 10.0
SCN2A_2_d10 data/salmon/61107AM-1-24-05550/quant.sf SCN2A_2_d10 SCN2A_2_d10 61107AM-1-24-05550 61107 day_10 day_10 F SAGCQR1262 SCN2A 1 9.9
SCN2A_2_d22 data/salmon/61107AM_22/quant.sf SCN2A_2_d22 SCN2A_2_d22 61107AM_22 61107 day_22 day_22 F SAGCQR1293 SCN2A 1 9.9
SCN2A_2_d28 data/salmon/61107AM_28/quant.sf SCN2A_2_d28 SCN2A_2_d28 61107AM_28 61107 day_28 day_28 F SAGCQR1293 SCN2A 1 9.8
SCN2A_3_FB data/salmon/61166AR-FB-24-05543/quant.sf SCN2A_3_FB SCN2A_3_FB 61166AR-FB-24-05543 61166 day_0 fibroblast F SAGCQR1262 SCN2A 1 9.5
SCN2A_3_d10 data/salmon/61166AR-10-24-05552/quant.sf SCN2A_3_d10 SCN2A_3_d10 61166AR-10-24-05552 61166 day_10 day_10 F SAGCQR1262 SCN2A 1 9.9
SCN2A_3_d22 data/salmon/61166AR_22/quant.sf SCN2A_3_d22 SCN2A_3_d22 61166AR_22 61166 day_22 day_22 F SAGCQR1293 SCN2A 1 9.8
SCN2A_3_d28 data/salmon/61166AR_28/quant.sf SCN2A_3_d28 SCN2A_3_d28 61166AR_28 61166 day_28 day_28 F SAGCQR1293 SCN2A 1 10.0
CHD2_1_FB data/salmon/61161RG-FB-24-05544/quant.sf CHD2_1_FB CHD2_1_FB 61161RG-FB-24-05544 61161 day_0 fibroblast F SAGCQR1262 CHD2 1 9.7
CHD2_1_d10 data/salmon/61161RG-10-24-05553/quant.sf CHD2_1_d10 CHD2_1_d10 61161RG-10-24-05553 61161 day_10 day_10 F SAGCQR1262 CHD2 1 9.9
CHD2_1_d22 data/salmon/61161RG_22/quant.sf CHD2_1_d22 CHD2_1_d22 61161RG_22 61161 day_22 day_22 F SAGCQR1293 CHD2 1 9.9
CHD2_1_d28 data/salmon/61161RG_28/quant.sf CHD2_1_d28 CHD2_1_d28 61161RG_28 61161 day_28 day_28 F SAGCQR1293 CHD2 1 9.8
CHD2_2_FB data/salmon/61171SW-FB-24-05545/quant.sf CHD2_2_FB CHD2_2_FB 61171SW-FB-24-05545 61171 day_0 fibroblast M SAGCQR1262 CHD2 1 9.6
CHD2_2_d10 data/salmon/61171SW-10-24-05554/quant.sf CHD2_2_d10 CHD2_2_d10 61171SW-10-24-05554 61171 day_10 day_10 M SAGCQR1262 CHD2 1 10.0
CHD2_2_d22 data/salmon/61171SW_22/quant.sf CHD2_2_d22 CHD2_2_d22 61171SW_22 61171 day_22 day_22 M SAGCQR1293 CHD2 1 9.9

Groups for statistical tests

These are complex data with genotype and differentiation state to be considered. The script below sets up these variables for the series of comparisons to be made with these data. There are four differentiation states (fibroblast, day 10, day 22 and day 28) and three genotypes (SCN2A, CHD2 and WT). There are several hypotheses that can be tested. 1. Transdifferentiation of fibroblasts leads to expression of neuronal marker genes. 2. WT, SCN2A and CHD2 genotypes confer differences in gene expression patterns at each diffrentiation time point.

# Set up vectors of categories

# Grouped categories
diffState = factor(paste(pdata.current$diffState))
genotype = factor(paste(pdata.current$genotype))
diffVsGeno = factor(paste(pdata.current$diffState, pdata.current$genotype, sep="."))
sex = factor(paste(pdata.current$sex))

# Define colour palettes for graphing
# I use the palettes suggested here https://tsitsul.in/blog/coloropt/ but there are many other options
# e.g. https://medialab.github.io/iwanthue/ or https://www.simplifiedsciencepublishing.com/resources/best-color-palettes-for-scientific-figures-and-data-visualizations

xgfs_normal12 = c("#ebac23", "#b80058", "#008cf9", "#006e00", "#00bbad", "#d163e6", "#b24502", "#ff9287", "#5954d6", "#00c6f8", "#878500", "#00a76c", "#bdbdbd")
pal4cellType = xgfs_normal12[c(1:length(levels(diffState)))]
pal4genotype = xgfs_normal12[c(1:length(levels(genotype)))]
pal4diffVsGeno = xgfs_normal12[c(1:length(levels(diffVsGeno)))]
pal4Sex = xgfs_normal12[c(6,9)] # It's sterotyped but it works
blue_col_scale = brewer.pal(4,"Blues")
pal4RIN = colorRampPalette(blue_col_scale)

# Gene and Transcript Lists

diffMarkerGenes = data.frame(ensembl_gene_id = c("ENSG00000111704",
                    "ENSG00000204531",
                    "ENSG00000181449",
                    "ENSG00000007372",
                    "ENSG00000163508",
                    "ENSG00000170558",
                    "ENSG00000132688",
                    "ENSG00000148773",
                    "ENSG00000077279",
                    "ENSG00000258947"))


# Custom sample order
sampleOrder = read.table(sampleList)
sampleOrder = as.vector(sampleOrder[,1])

WTsamples = pdata.current$sampleCode[pdata.current$genotype == "WT"]
SCN2Asamples = pdata.current$sampleCode[pdata.current$genotype == "SCN2A"]
CHD2samples = pdata.current$sampleCode[pdata.current$genotype == "CHD2"]

Epilepsy_gene_list = read.table(EpilepsyGenes, header = TRUE, sep = "\t")
DEE_List = Epilepsy_gene_list$ensembl_gene_id[grep("DEE", Epilepsy_gene_list$Phenotype)] # column names of the original file https://github.com/bahlolab/Genes4Epilepsy/releases/tag/v2024_09 have been edited
DEE_biobank_list = read.table("data/reference/EpilepsyBiobank.list.txt", col.names = "ensembl_gene_id")

SCN2A_gene = "ENSG00000136531"
SCN2A_transcripts = c("ENST00000375437", 
"ENST00000636071",
"ENST00000636985",
"ENST00000631182",
"ENST00000283256",
"ENST00000637266") # GENCODE only

CHD2_gene = "ENSG00000173575"
CHD2_transcripts = c("ENST00000394196",
"ENST00000626874",
"ENST00000628375",
"ENST00000625990",
"ENST00000420239",
"ENST00000626782",
"ENST00000627622",
"ENST00000629346") # GENCODE only

Import counts data

Counts data were generated using the Salmon pipeline. The individual quant.sf files contain counts and TPM data which will be extracted here and combined into transcript or gene counts.

imported.counts <- tximeta(coldata = pdata.current)
## importing quantifications
## reading in files with read_tsv
## 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 
## found matching transcriptome:
## [ Ensembl - Homo sapiens - release 97 ]
## loading existing EnsDb created: 2022-03-29 04:40:14
## loading existing transcript ranges created: 2022-03-29 04:40:25
summarised.genes = summarizeToGene(imported.counts)
## loading existing EnsDb created: 2022-03-29 04:40:14
## obtaining transcript-to-gene mapping from database
## loading existing gene ranges created: 2022-03-29 04:52:57
## gene ranges assigned by total range of isoforms, see `assignRanges`
## summarizing abundance
## summarizing counts
## summarizing length

Export counts for differential expression analysis

The counts.current object is not strictly necessary but it can be helpful if subsetting counts into smaller groups or switching between summarised gene counts or transcript counts.

gene.counts = assays(summarised.genes)[["counts"]]
transcript.counts = assays(imported.counts)[["counts"]]
counts.current<-gene.counts[,samples]

Make a simple table of expression values

These are normalized counts data and give an indication of the level of expression using the TPM units. It’s important to note that edgeR uses CPM to calculate differential expression so if you manually calculate fold changes from these data then you will likely not get the same result however the trend should be the same. This short blog post goes through some of the differences in RNA-seq measures https://haroldpimentel.wordpress.com/2014/05/08/what-the-fpkm-a-review-rna-seq-expression-units/

gene.TPM <- assays(summarised.genes)[["abundance"]]
transcript.TPM <- assays(imported.counts)[["abundance"]]
current.TPM = gene.TPM

Export counts table for unaffected individuals with annotations

selectSamples = WTsamples
expressionMatrix = log(gene.TPM[ , selectSamples ], 2)
ensembl = useMart("ensembl",dataset="hsapiens_gene_ensembl")
Annotations = getBM(attributes = c('hgnc_symbol','ensembl_gene_id','entrezgene_description'),
                     filters = 'ensembl_gene_id',
                     values = gsub("\\..*","",row.names(gene.TPM)),
                     mart = ensembl)

expressionMatrix = cbind(expressionMatrix, data.frame(ensembl_gene_id=gsub("\\..*","",row.names(expressionMatrix))))
expressionMatrix = left_join(expressionMatrix, Annotations, by="ensembl_gene_id")
expressionMatrix = distinct(expressionMatrix, ensembl_gene_id, .keep_all = TRUE)
rownames(expressionMatrix)<-expressionMatrix$ensembl_gene_id
write.table(expressionMatrix, file = "output/misc/WT_FB_to_day_28_iN.log2.TPM.txt", quote = FALSE, row.names=TRUE, col.names=TRUE, sep = "\t")

QC

MDS Plot to file and show in the markdown

The multidimensional scaling (MDS) plot shows the largest distance between samples based on the ranked largest fold changes in gene expression between each sample pair. Only the first two factors are shown in the 2D plot. Each cell fraction has separated into a group in the graph with the nuclear and cytoplasmic samples showing some variation but overall these data look good. All graphs are the same but the colours change to indicate different classes of covariates to help in their interpretation.

## png 
##   2

You can look through the following plots to explore the sources of variation

plotMDS(d, labels=pdata.current$sampleCode, col = pal4diffVsGeno[factor(diffVsGeno)], main = "Colour by Major Groups")

plotMDS(d, labels=pdata.current$sampleCode, col = pal4cellType[factor(diffState)], main = "Colour by Cell Type")

plotMDS(d, labels=pdata.current$sampleCode, col = xgfs_normal12[c(1:length(levels(pdata.current$genotype)))][factor(pdata.current$genotype)], main = "Colour by Genotype")

plotMDS(d, labels=pdata.current$sampleCode, col = xgfs_normal12[c(1:length(levels(pdata.current$batch)))][factor(pdata.current$batch)], main = "Colour by Batch")

plotMDS(d, labels=pdata.current$sampleCode, col = pal4Sex[factor(pdata.current$sex)], main = "Colour by Sex")

plotMDS(d, labels=pdata.current$sampleCode, col = pal4RIN(nrow(pdata.current))[findInterval(pdata$RIN, sort(c(0:10)))], main = "Colour by RIN") #[findInterval(pdata$RIN, sort(pdata.current$RIN))]

Note: CON3 (MC2936) sits apart from all other samples at all timepoints.

Plot library sizes

Library size is taken into account by edgeR during the analysis so that counts are comparable for each gene or transcripts across all samples. Note that edgeR does not perform any normalisation of counts data between genes or transcript (such as TPM or FPKM) because comparisons are only made per transcript or per gene their length is irrelevant.

#par(mar = c(7, 4, 2, 2) + 0.5)
fudge = 7.5 # Hacky way of getting the x-axis labels positioned correctly in this plot you will need to adjust each time. Go down if the labels are longer than the graph and up if the graph is longer than the labels.
barplot(d$samples$lib.size, 
        xlab="Samples", 
        ylab="Library Size", 
        col = pal4genotype[factor(pdata.current$genotype)])
text(seq(1, nrow(pdata.current) + fudge, by = (nrow(pdata.current) + fudge)/nrow(pdata.current)), 
     par("usr")[3] - 0.25, 
     cex=0.6, 
     adj = 1.1, 
     labels=pdata.current$sampleCode, 
     xpd=TRUE, 
     srt=45)

3D PCA plot

Like the MDS plot, the principle components analysis plot is another way of looking at differences between the sample in bulk and exploring the sources of sample variation. Unfortunately this won’t render in the html, but you can see the table containing the PCA output below and some images that have been pasted in looking at each dimension.

pc <- princomp(counts.current, cor=TRUE, scores=TRUE)
summary(pc)
## Importance of components:
##                           Comp.1    Comp.2    Comp.3     Comp.4      Comp.5      Comp.6      Comp.7       Comp.8       Comp.9      Comp.10
## Standard deviation     5.3468110 2.2249377 0.7560462 0.59185112 0.387271098 0.361847092 0.257175861 0.1867847901 0.1811372314 0.1503774026
## Proportion of Variance 0.8168111 0.1414385 0.0163316 0.01000822 0.004285112 0.003740952 0.001889698 0.0009968159 0.0009374485 0.0006460961
## Cumulative Proportion  0.8168111 0.9582496 0.9745812 0.98458939 0.988874502 0.992615454 0.994505152 0.9955019680 0.9964394165 0.9970855126
##                             Comp.11      Comp.12      Comp.13      Comp.14      Comp.15      Comp.16     Comp.17      Comp.18      Comp.19
## Standard deviation     0.1239639395 0.1133897931 0.1062937527 0.0987557313 0.0922427773 0.0830794502 0.081162716 0.0782005508 0.0679125485
## Proportion of Variance 0.0004390588 0.0003673499 0.0003228103 0.0002786484 0.0002431066 0.0001972056 0.000188211 0.0001747236 0.0001317747
## Cumulative Proportion  0.9975245714 0.9978919213 0.9982147316 0.9984933800 0.9987364866 0.9989336922 0.999121903 0.9992966268 0.9994284015
##                             Comp.20      Comp.21     Comp.22      Comp.23      Comp.24      Comp.25      Comp.26      Comp.27      Comp.28
## Standard deviation     0.0618664973 0.0528069028 0.049940264 4.433936e-02 0.0431201468 3.733637e-02 3.216225e-02 0.0301325991 2.874627e-02
## Proportion of Variance 0.0001093561 0.0000796734 0.000071258 5.617082e-05 0.0000531242 3.982871e-05 2.955459e-05 0.0000259421 2.360995e-05
## Cumulative Proportion  0.9995377576 0.9996174310 0.999688689 9.997449e-01 0.9997979840 9.998378e-01 9.998674e-01 0.9998933094 9.999169e-01
##                             Comp.29      Comp.30      Comp.31      Comp.32      Comp.33      Comp.34      Comp.35
## Standard deviation     2.642349e-02 2.347309e-02 2.210091e-02 1.957644e-02 1.786769e-02 1.617995e-02 1.434929e-02
## Proportion of Variance 1.994859e-05 1.574246e-05 1.395572e-05 1.094963e-05 9.121553e-06 7.479735e-06 5.882918e-06
## Cumulative Proportion  9.999369e-01 9.999526e-01 9.999666e-01 9.999775e-01 9.999866e-01 9.999941e-01 1.000000e+00
plot3d(pc$loadings[,1:3], col=xgfs_normal12[c(1:length(levels(pdata.current$genotype)))][factor(pdata.current$genotype)], size=2)
text3d(pc$loadings[,1:3], text=colnames(counts.current), col = xgfs_normal12[c(1:length(levels(pdata.current$genotype)))][factor(pdata.current$genotype)])

Note: The first 6 principle components comprise 99% of the variance. The 3D PCA plot, separates different cell types from each other.

PCA 1 vs 2

PCA plot dim 1 vs dim 2
PCA plot dim 1 vs dim 2

PCA 1 vs 3

PCA plot dim 1 vs dim 3
PCA plot dim 1 vs dim 3

PCA 2 vs 3

PCA plot dim 2 vs dim 3
PCA plot dim 2 vs dim 3

Note: There are no samples to exclude on the basis of the QC analysis above. Here, we filter out anything which isn’t an annotated gene so that we can interpret the analysis. We also reset any groups that might have changed if samples need to be removed from the analysis

Run a preliminary analysis to check data normalisation

This part of the scripts applies normalisation to account for library size and removes genes that have low or no expression spanning over multiple experimental groups (we don’t want to throw out a transcript which is not expressed in just one group as that could be very important). Low abundance transcripts in RNA-seq data are prone to high variation and will often “pollute” the final list of differentially expressed genes due to small variations in read counts per sample that result in apparently high fold changes (e.g. CPM=1 vs CPM=2 is a twofold change but CPM=101 vs CPM=102 is the same change in read count but not a large fold change). edgeR has ways of compressing fold changes when the overall counts are low to help deal with this. We then make some plots to look at the shape of the data to check it fits the typical model expected for RNAseq data.

d = DGEList(counts=counts.current, group=diffVsGeno)
keep = filterByExpr(d)
d = d[keep, , keep.lib.sizes=FALSE]
d = calcNormFactors(d)
f <- factor(diffVsGeno, levels=levels(diffVsGeno))
design = model.matrix(~0+f)
rownames(design) <- colnames(d)
d = estimateDisp(d, design, robust = TRUE)

Mean Variance, BCV and QL plots

The Mean Variance plot shows the pooled variance of the counts from each sample, divided by a scaling factor calculated above (mostly this is library size). The black line indicates a standard Poisson distribution (it is usual for all other data points on the plot to be above this line) and the blue line indicates the prediction for a negative binomial model (we expect our data to lie close to this line). The blue dots are the average gene-level variance (the grey dots are the original values). The red “X” are the common dispersions of transcripts (averaged for transcripts within the bin it represents). Overall these data look good and follow the negative binomial model reasonably closely.

The biological coefficient of variation (BCV) plot shows the differences in variation per gene compared to average gene expression (standard deviation / average expression). You can see that genes with low expression have higher variation.

The Quasi-Likelihood dispersion plot shows the transformation of read count data (black to red) after applying normalisation.

These plots support that these data are of good quality and will be good to perform differential gene expression (or differential export) analyses.

## Warning in plot.window(...): "plot.first" is not a graphical parameter
## Warning in plot.xy(xy, type, ...): "plot.first" is not a graphical parameter
## Warning in axis(side = side, at = at, labels = labels, ...): "plot.first" is not a graphical parameter
## Warning in axis(side = side, at = at, labels = labels, ...): "plot.first" is not a graphical parameter
## Warning in box(...): "plot.first" is not a graphical parameter
## Warning in title(...): "plot.first" is not a graphical parameter
## png 
##   2
## png 
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plotMeanVar(d, show.tagwise.vars=TRUE, show.raw.vars = TRUE, NBline=TRUE)
## Warning in plot.window(...): "plot.first" is not a graphical parameter
## Warning in plot.xy(xy, type, ...): "plot.first" is not a graphical parameter
## Warning in axis(side = side, at = at, labels = labels, ...): "plot.first" is not a graphical parameter
## Warning in axis(side = side, at = at, labels = labels, ...): "plot.first" is not a graphical parameter
## Warning in box(...): "plot.first" is not a graphical parameter
## Warning in title(...): "plot.first" is not a graphical parameter

plotBCV(d)

plotQLDisp(fit)

Check expression of target genes

Plot out the expression of the target genes in each time point to check their expression levels.

current.gene = SCN2A_gene
gene_data = cbind(pdata.current[ , c("sampleCode", "genotype", "timepoint")], current.TPM[current.gene,])
colnames(gene_data) <- c("sampleCode", "genotype", "timepoint", "SCN2A")
gene_data = mutate(gene_data, genotype.timepoint = paste(genotype, timepoint, sep="."))
gene_data$genotype.timepoint = factor(gene_data$genotype.timepoint)


#png(filename=paste("output/qc/TPM",current.gene,ExperimentName,Test,"png", sep="."), height=980, width=980, bg="white")
ggplot(data = gene_data, aes( x = genotype.timepoint, y = SCN2A, colour = factor(genotype))) +
  geom_boxplot(lwd = 1, outlier.shape = NA) +
  scale_color_manual(values = pal4genotype) + #[factor(pdata.current$genotype)]) +  
  geom_jitter(color = "grey") +
  xlab("Genotype at developmental timepoint") +
  ylab(paste("TPM SCN2A (", current.gene, ")", sep ="")) +
  labs(color="Genotype") +
  theme_bw() +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust = 1))

#dev.off()

current.gene = CHD2_gene
gene_data = cbind(pdata.current[ , c("sampleCode", "genotype", "timepoint")], current.TPM[current.gene,])
colnames(gene_data) <- c("sampleCode", "genotype", "timepoint", "CHD2")
gene_data = mutate(gene_data, genotype.timepoint = paste(genotype, timepoint, sep="."))
gene_data$genotype.diffState = factor(gene_data$genotype.timepoint)


#png(filename=paste("output/qc/TPM",current.gene,ExperimentName,Test,"png", sep="."), height=980, width=980, bg="white")
ggplot(data = gene_data, aes( x = genotype.timepoint, y = CHD2, colour = factor(genotype))) +
  geom_boxplot(lwd = 1, outlier.shape = NA) +
  scale_color_manual(values = pal4genotype) + #[factor(pdata.current$genotype)]) +  
  geom_jitter(color = "grey") +
  xlab("Genotype at developmental timepoint") +
  ylab(paste("TPM CHD2 (", current.gene, ")", sep ="")) +
  labs(color="Genotype") +
  theme_bw() +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust = 1))

#dev.off()

Note: Expression of both genes is variable in different samples and biological replicates. SCN2A expression is very low and moderately increases on average in WT and SCN2A cell lines. CHD2 expression is relatively high and dips at day 10 and 22 compared to fibroblast and day 28 iNeurons.

Data Analysis

Hypotheses to test

In all cases, each cell type will be tested separately except in the final cross comparisons where we will factor in differentiation over time and identify genes that change at different rates.

Hypothesis 1: Transdifferentiation of fibroblasts leads to expression of neuronal marker genes.

We’ll start by looking at the differentiation state of these cell lines relative to some typical marker genes. The first heatmap does not log2 transform the TPMs and also clusters the cell lines. In the second heatmap TPMs are log2 transformed and the ordering is the same as it appears in the pdata table. To avoid any errors during plotting a very small increment (0.0001) is added to all TPMs prior to log2 transformation.

expressionMatrix = gene.TPM[ match(diffMarkerGenes$ensembl_gene_id,row.names(gene.TPM)), ]
ensembl = useMart("ensembl",dataset="hsapiens_gene_ensembl")
Annotations = getBM(attributes = c('hgnc_symbol','ensembl_gene_id'),
                     filters = 'ensembl_gene_id',
                     values = diffMarkerGenes$ensembl_gene_id,
                     mart = ensembl)
Annotations = left_join(diffMarkerGenes, Annotations, by="ensembl_gene_id")
row.names(expressionMatrix) <- Annotations$hgnc_symbol
pheatmap(log2(expressionMatrix + 0.0001), color = colorRampPalette(rev(brewer.pal(n = 7, name ="RdBu"))) (100), 
                   angle_col = 90, cluster_cols = TRUE, cluster_rows = TRUE,
                   main = "Expression (log2 TPM)")

pheatmap(log2(expressionMatrix + 0.0001), color = colorRampPalette(rev(brewer.pal(n = 7, name ="RdBu"))) (100), 
                   angle_col = 90, cluster_cols = FALSE, cluster_rows = FALSE,
                   main = "Expression (log2 TPM)")

write.table(expressionMatrix, file = "output/misc/differentiation.markers.txt", quote=FALSE, row.names=TRUE, col.names=TRUE, sep="\t")

Note: Fibroblast lines cluster together while neurons do not necessarily cluster by differentiation state.

Set up functions for testing differential expression

The following functions save us some typing later on and ensures that the tests we run are consistent between different differentiation time points.

# Define some functions so that code can be reused

# This function tests a subset of genotypes at a particular state of differentiation.  It subsets pdata, fits the statistical generalised linear model to perform differential expression and return the results.
test_a_diff_state = function(diffState, countTable) {
  pdata.current = pdata[pdata$diffState %in% diffState,]
  samples = as.character(pdata.current$sampleCode)
  counts.current = countTable[,samples]
  d = DGEList(counts=counts.current, group=pdata.current$genotype)
  f <- factor(pdata.current$genotype, levels=c("WT","SCN2A","CHD2")) # This sets the levels in the exact order we want
  design = model.matrix(~f)
  rownames(design) <- colnames(d)
  keep = filterByExpr(d, design)
  d = d[keep,]
  d = calcNormFactors(d)
  d = estimateDisp(d, design, robust = TRUE)
  return(glmQLFit(d, design))
}

# This function generates a text table that summarises how many genes are differentially expressed at different levels of differentiation.
sig.gene.summary = function(x) {
  sgs = cbind(summary(decideTests(x, p=0.005)),
              summary(decideTests(x, p=0.01)),
              summary(decideTests(x, p=0.05)),
              summary(decideTests(x, p=0.2)),
              summary(decideTests(x, adjust.method="none", p=0.01)))
  colnames(sgs)<-c("q0.005", "q0.01", "q0.05", "q0.2", "p0.01")
  return(sgs)
}

# ensembl = useMart("ensembl",dataset="hsapiens_gene_ensembl")

# This function adds gene annotations to a table of genes filterd by False Discovery Rate
attach_annotations_by_FDR = function(x, FDR) {
  pValCut = sum(p.adjust(x$table$PValue,method="BH") < FDR)
  tagsToAnnotate = topTags(x, n=pValCut)
  betterAnno = getBM(attributes = c('hgnc_symbol','entrezgene_description', 'chromosome_name', 'start_position', 'end_position', 'gene_biotype','hgnc_id','ensembl_gene_id'),
                     filters = 'ensembl_gene_id',
                     values = gsub("\\..*","",row.names(tagsToAnnotate)),
                     mart = ensembl)

  dexg = cbind(tagsToAnnotate, data.frame(ensembl_gene_id=gsub("\\..*","",row.names(tagsToAnnotate))))
  dexg = left_join(dexg, betterAnno, by="ensembl_gene_id")
  dexg = distinct(dexg, ensembl_gene_id, .keep_all = TRUE)
  rownames(dexg)=rownames(tagsToAnnotate)
  if (is(x, "DGELRT")){
    tpm.dexg = current.TPM[rownames(dexg), rownames(x$samples)]
    tpm.summary = t(aggregate(t(tpm.dexg), list(x$samples$group), mean))
    colnames(tpm.summary) = tpm.summary[1,]
    tpm.summary = apply(tpm.summary[-1,],2,as.numeric)
    rownames(tpm.summary) = rownames(tpm.dexg)
    tpm.dexg = log2(cbind(tpm.dexg + 0.0001, tpm.summary + 0.0001))
    dexg = cbind(dexg, tpm.dexg)
  }
  return(dexg)
}

# As above but filtering by p value
attach_annotations_by_p = function(x, pVal) {
  pValCut = sum(x$table$PValue < pVal)
  tagsToAnnotate = topTags(x, n=pValCut)
  betterAnno = getBM(attributes = c('hgnc_symbol','entrezgene_description', 'chromosome_name', 'start_position', 'end_position', 'gene_biotype','hgnc_id','ensembl_gene_id'),
                     filters = 'ensembl_gene_id',
                     values = gsub("\\..*","",row.names(tagsToAnnotate)),
                     mart = ensembl)

  dexg = cbind(tagsToAnnotate, data.frame(ensembl_gene_id=gsub("\\..*","",row.names(tagsToAnnotate))))
  dexg = left_join(dexg, betterAnno, by="ensembl_gene_id")
  dexg = distinct(dexg, ensembl_gene_id, .keep_all = TRUE)
  rownames(dexg)=rownames(tagsToAnnotate)
  if (is(x, "DGELRT")){
    tpm.dexg = current.TPM[rownames(dexg), rownames(x$samples)]
    tpm.summary = t(aggregate(t(tpm.dexg), list(x$samples$group), mean))
    colnames(tpm.summary) = tpm.summary[1,]
    tpm.summary = apply(tpm.summary[-1,],2,as.numeric)
    rownames(tpm.summary) = rownames(tpm.dexg)
    tpm.dexg = log2(cbind(tpm.dexg + 0.0001, tpm.summary + 0.0001))
    dexg = cbind(dexg, tpm.dexg)
  }
  return(dexg)
}

# This function tests the significance of gene list overlaps.  To use it you need to know the length of the lists you are checking and the background list of genes expressed at the time point/s of interest.
hypergeometric_test_of_lists = function(total_genes, longest_list, shortest_list) {
  n = length(unique(total_genes))
  a = length(longest_list)
  b = length(shortest_list)
  t = length(intersect(longest_list, shortest_list))
  PValue = sum(dhyper(t:b, a, n - a, b))
  df = data.frame("total.genes" = n, "list.1" = a, "list.2" = b, "intersection" = t, "PValue" = PValue)
  return(df)
}

Hypothesis 2: WT, SCN2A and CHD2 genotypes confer differences in gene expression patterns at each diffrentiation time point.

In the following tables: logFC is the log2 transformed fold change between the test groups and the control group. logCPM is the average log2 transformed CPM value for all samples, values less than 0 usually indicate a gene with low expression however it is important to remember that this value is not normalised to gene length so a shorter transcript naturally has less reads mapped than a longer transcript with an equivalent level of expression. PValue is self explanatory, FDR is the adjusted p-value “False Discovery Rate”. In the summary of numbers of differentially expressed genes, FDR is represented by “q” while raw p-values are represented by “p”.

1a. Fibroblasts

Test the differences between WT, SCN2A and CHD2 at the Fibroblast stage.

fit = test_a_diff_state(diffState = "fibroblast", countTable = counts.current)
qlf = glmQLFTest(fit, coef=2:3)
sig.gene.summary(qlf)
##        q0.005 q0.01 q0.05  q0.2 p0.01
## NotSig  12676 12676 12675 12663 12395
## Sig         2     2     3    15   283
FB.genes.expressed = rownames(qlf$table)
attach_annotations_by_p(qlf, 0.01) %>%
  kbl() %>%
  kable_styling(bootstrap_options = c("striped", "hover", "condensed")) %>%
  scroll_box(width = "100%", height = "300px")
logFC.fSCN2A logFC.fCHD2 logCPM F PValue FDR ensembl_gene_id hgnc_symbol entrezgene_description chromosome_name start_position end_position gene_biotype hgnc_id CON_1_FB CON_2_FB CON_3_FB_A CON_3_FB_B CON_4_FB_A CON_4_FB_B SCN2A_1_FB SCN2A_2_FB SCN2A_3_FB CHD2_1_FB CHD2_2_FB CHD2 SCN2A WT
ENSG00000164530 9.2672318 7.6556384 7.790190 59.243990 0.0000000 0.0000207 ENSG00000164530 PI16 peptidase inhibitor 16 6 36948263 36964837 protein_coding HGNC:21245 1.5685901 -13.2877124 1.8602497 -13.2877124 -13.2877124 0.3875004 8.3132082 5.8975554 10.1103921 8.0880708 6.3647256 7.4697370 8.9494521 0.3978533
ENSG00000083099 3.7351734 3.3493742 6.330989 51.016041 0.0000003 0.0019139 ENSG00000083099 LYRM2 LYR motif containing 2 6 89568144 89638749 protein_coding HGNC:25229 3.1949867 2.6888965 1.0696987 1.5571777 3.2828746 0.7336207 5.0188961 5.9819918 6.5687089 5.6249322 6.2286551 5.9581457 5.9890822 2.4169937
ENSG00000109063 3.6513523 2.3101942 5.155197 32.174940 0.0000041 0.0173265 ENSG00000109063 MYH3 myosin heavy chain 3 17 10628526 10657309 protein_coding HGNC:7573 0.8480602 2.8387078 0.7874383 2.9153335 0.6148709 1.3582730 5.9686701 4.8309661 7.9754225 5.4247829 6.1832728 5.8533106 6.8361048 1.8952444
ENSG00000254206 2.7146657 3.3129754 2.666425 17.990701 0.0000252 0.0531919 ENSG00000254206 NPIPB11 nuclear pore complex interacting protein family member B11 16 29381310 29406711 protein_coding HGNC:37453 -2.0763594 -0.1423645 0.1772596 0.1291194 -2.5292809 -1.1611240 1.3445558 1.9404276 2.2891912 2.2318314 2.1845298 2.2083746 1.9088813 -0.5893354
ENSG00000135480 3.7820957 3.1556781 6.342843 24.082386 0.0000261 0.0531919 ENSG00000135480 KRT7 keratin 7 12 52232520 52252186 protein_coding HGNC:6445 4.4070195 3.9599184 1.7580106 4.6663550 3.9946752 4.3414770 8.3168541 6.0636343 8.3904247 7.1284972 7.6894402 7.4360616 7.9095373 4.0841468
ENSG00000007341 1.3843421 0.6387696 6.747843 23.728919 0.0000275 0.0531919 ENSG00000007341 ST7L suppression of tumorigenicity 7 like 1 112523514 112620825 protein_coding HGNC:18441 6.0808947 6.7549955 6.8066110 6.5654689 6.3754893 6.0333273 7.2524579 7.3427444 7.3154031 6.8994755 6.6818092 6.7947434 7.3040282 6.4672648
ENSG00000064989 2.9881644 4.7626175 2.970199 17.894525 0.0000294 0.0531919 ENSG00000064989 CALCRL calcitonin receptor like receptor 2 187341964 187448460 protein_coding HGNC:16709 -1.8718280 -13.2877124 -13.2877124 -13.2877124 -0.3365934 -13.2877124 0.8038511 0.0141810 0.5672913 3.0638781 1.7013357 2.5378170 0.4982073 -2.4933834
ENSG00000106069 4.6661987 3.6804938 5.756248 20.065964 0.0000526 0.0832800 ENSG00000106069 CHN2 chimerin 2 7 29146547 29514328 protein_coding HGNC:1944 2.7170637 1.5844613 0.6769552 1.4557546 1.3148763 2.3939955 3.5830036 4.5846315 7.8068619 6.2585512 5.1201766 5.7988474 6.4368596 1.8519968
ENSG00000213024 2.0169871 1.3515877 7.160798 20.170730 0.0000664 0.0934970 ENSG00000213024 NUP62 nucleoporin 62 19 49906825 49929764 protein_coding HGNC:8066 4.6465495 4.8917150 4.5804052 4.8299195 5.1333122 5.7102342 6.3392705 6.5076683 7.4661676 6.1983424 6.4140779 6.3102389 6.8612242 5.0190391
ENSG00000241166 4.2399516 -2.8046557 2.251460 16.086412 0.0001149 0.1456085 ENSG00000241166 HLA-L HSCHR6_MHC_DBB_CTG1 1515484 1518204 transcribed_unprocessed_pseudogene HGNC:4970 -13.2877124 -0.0779194 -13.2877124 -13.2877124 -13.2877124 0.5075136 2.2400539 1.3334982 0.9362554 -13.2877124 -13.2877124 -13.2877124 1.6100436 -1.3404279
ENSG00000111057 3.4596750 5.1954877 4.526283 14.602141 0.0001314 0.1476177 ENSG00000111057 KRT18 keratin 18 12 52948871 52952906 protein_coding HGNC:6430 -13.2877124 3.3980105 -13.2877124 -13.2877124 -0.2186185 -13.2877124 4.4183729 3.4877238 5.4113584 2.3557262 7.4736129 6.5145727 4.6469029 0.9261642
ENSG00000244731 -3.3054461 3.5419307 1.812557 14.672658 0.0001433 0.1476177 ENSG00000244731 C4A complement C4A (Chido/Rodgers blood group) 6 31982057 32002681 protein_coding HGNC:1323 -13.2877124 -1.7750904 1.0414357 4.2275700 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 1.3322960 4.9266911 4.0414449 -13.2877124 1.8131503
ENSG00000167393 3.2263936 1.4538977 3.684147 15.238303 0.0001514 0.1476177 ENSG00000167393 PPP2R3B protein phosphatase 2 regulatory subunit B’’beta X 333933 386955 protein_coding HGNC:13417 2.1346238 -13.2877124 2.7162532 -0.9788159 2.9258810 3.8415847 3.8849634 5.9167611 3.3243953 3.5931000 4.1045265 3.8713577 4.8278659 2.4770675
ENSG00000225972 5.6539493 0.1005963 6.369997 16.144869 0.0001743 0.1567709 ENSG00000225972 MTND1P23 1 629062 629433 unprocessed_pseudogene HGNC:42092 6.5580168 6.2927348 6.0878148 5.6260550 5.0816076 4.1057530 5.6982978 5.9012349 13.0267296 6.4465396 5.4231918 6.0237614 11.4609474 5.8291039
ENSG00000137312 -1.6662508 -9.0869733 4.858307 17.493794 0.0001855 0.1567709 ENSG00000137312 FLOT1 flotillin 1 6 30727709 30742732 protein_coding HGNC:3757 5.3995838 5.0970812 5.1516244 5.4436381 5.1876357 5.1457875 -13.2877124 4.5483309 3.1860157 -13.2877124 -13.2877124 -13.2877124 3.4373756 5.2438343
ENSG00000139174 1.6513321 2.9834015 2.849188 12.791121 0.0002741 0.2172247 ENSG00000139174 PRICKLE1 prickle planar cell polarity protein 1 12 42456757 42590355 protein_coding HGNC:17019 4.3087540 1.5602518 -0.5118408 -0.7311991 -13.2877124 -0.5263855 1.2224652 0.9216816 1.2136422 1.7941771 3.6395692 2.9937729 1.1258706 2.0452902
ENSG00000261862 -3.3511838 -2.7839963 3.072612 13.085217 0.0003168 0.2341874 ENSG00000261862 KRTAP1-5 keratin associated protein 1-5 HSCHR17_4_CTG4 175421 176597 protein_coding HGNC:16777 3.6243936 4.5895933 4.5600874 5.0328549 2.9230889 3.8063444 -0.4183846 1.9719250 -13.2877124 2.0101317 -0.1324340 1.3046512 0.6388533 4.2518627
ENSG00000174564 1.1893128 3.4789206 2.814612 11.973171 0.0003526 0.2341874 ENSG00000174564 IL20RB interleukin 20 receptor subunit beta 3 136946230 137011085 protein_coding HGNC:6004 -13.2877124 1.4455731 1.4010395 1.2799936 -13.2877124 -13.2877124 2.3336934 1.9520267 -13.2877124 4.3408204 4.0393879 4.1979625 1.5704984 0.3772737
ENSG00000170421 3.3611238 4.9049124 6.696249 14.245325 0.0003891 0.2341874 ENSG00000170421 KRT8 keratin 8 12 52897187 52949954 protein_coding HGNC:6446 3.5556359 7.4443834 3.8203234 2.5285513 4.4441016 5.3298751 9.3591420 5.8559226 9.7138019 7.3786731 11.6688783 10.7407942 9.0171633 5.4801413
ENSG00000137507 2.4337810 2.7646691 4.404726 13.734843 0.0004051 0.2341874 ENSG00000137507 LRRC32 leucine rich repeat containing 32 11 76657524 76670747 protein_coding HGNC:4161 1.2822162 2.4234300 2.0608948 -1.1054950 0.7178306 1.6856114 2.0509965 2.7470243 4.2793657 2.8932826 4.4274869 3.8553828 3.3351316 1.5273406
ENSG00000258388 -7.4761764 -5.4314807 7.081219 12.892434 0.0004053 0.2341874 ENSG00000258388 PPT2-EGFL8 6 32153845 32171978 protein_coding HGNC:48343 6.7863906 6.7813768 -13.2877124 -13.2877124 6.9716695 7.3040667 2.6620391 -13.2877124 -13.2877124 1.8729276 -13.2877124 0.8729666 1.0771220 6.3921114
ENSG00000109771 1.8243018 1.4869601 7.597406 13.899344 0.0004324 0.2341874 ENSG00000109771 LRP2BP LRP2 binding protein 4 185363872 185395924 protein_coding HGNC:25434 5.5799485 4.6951447 5.0904707 4.3628712 5.0476673 4.8264153 5.9053402 6.0345403 7.4217346 6.1640556 6.7532774 6.4885407 6.6290994 4.9836189
ENSG00000145244 1.7095681 1.4297110 4.903230 13.773065 0.0004610 0.2341874 ENSG00000145244 CORIN corin, serine peptidase 4 47593999 47838106 protein_coding HGNC:19012 3.8881454 2.5210495 3.5227454 0.7246948 1.9955742 0.9316793 3.2971899 4.3917603 4.3942518 4.2071219 3.8285281 4.0302084 4.1113112 2.7220159
ENSG00000170370 -1.1699209 -1.4972110 5.497926 13.689262 0.0004675 0.2341874 ENSG00000170370 EMX2 empty spiracles homeobox 2 10 117542445 117549546 protein_coding HGNC:3341 5.2627312 4.9650124 5.1279217 5.3250245 5.3836649 6.3508359 4.5756309 3.7016494 4.2210166 3.7853141 3.6584651 3.7232833 4.2095844 5.4813752
ENSG00000183801 2.0739234 1.6949641 4.211358 13.505064 0.0004716 0.2341874 ENSG00000183801 OLFML1 olfactomedin like 1 11 7485388 7511377 protein_coding HGNC:24473 3.5795251 1.2701946 1.6466862 1.1391001 2.0718910 3.0124274 3.7943270 4.1178676 4.2831178 3.9026505 3.4484134 3.6933358 4.0791041 2.4138629
ENSG00000109775 2.6414430 2.7825633 7.380301 13.519539 0.0004947 0.2341874 ENSG00000109775 UFSP2 UFM1 specific peptidase 2 4 185399537 185425979 protein_coding HGNC:25640 4.6329764 4.5927965 5.2386945 4.6289798 5.0782939 5.2711978 5.8384442 5.9567915 8.6188333 6.1323981 8.4653722 7.7265714 7.4163148 4.9373952
ENSG00000197928 -0.3598716 2.0870240 2.152507 11.041593 0.0004987 0.2341874 ENSG00000197928 ZNF677 zinc finger protein 677 19 53235381 53254898 protein_coding HGNC:28730 2.5104873 -0.3782730 2.2590477 3.4394793 -0.5820843 2.2809501 1.6150240 1.2505372 0.1147348 4.3413044 3.1124528 3.8539428 1.1210691 2.2032604
ENSG00000283787 4.0075943 2.2169104 2.788744 10.795454 0.0005675 0.2567930 ENSG00000283787 PRR33 proline rich 33 11 1888078 1891895 protein_coding HGNC:35118 0.3881598 -2.0168331 -13.2877124 -13.2877124 -1.6358893 -13.2877124 2.1565021 0.4908935 3.6205071 1.7504269 -1.8832094 0.8622177 2.5979653 -1.6758461
ENSG00000237973 2.2795341 1.6837567 3.439719 12.125130 0.0005874 0.2567930 ENSG00000237973 MTCO1P12 1 631074 632616 unprocessed_pseudogene HGNC:52014 2.6700134 1.8455968 1.4958179 -13.2877124 1.9637201 2.7614138 4.0161069 4.0888345 4.3518171 4.1265077 2.9817617 3.6648166 4.1595881 1.9671671
ENSG00000151388 1.6567856 2.1044675 4.231495 12.704780 0.0006365 0.2685592 ENSG00000151388 ADAMTS12 ADAM metallopeptidase with thrombospondin type 1 motif 12 5 33523535 33892019 protein_coding HGNC:14605 1.1103706 0.9970047 2.2304465 2.0293356 -0.2747073 -0.9759215 1.7384168 1.9184832 3.0381445 1.3631318 3.3361137 2.6634860 2.3534438 1.2494308
ENSG00000105989 3.1447524 1.4389217 2.688951 10.526580 0.0006567 0.2685592 ENSG00000105989 WNT2 Wnt family member 2 7 117275451 117323152 protein_coding HGNC:12780 -0.3018936 1.6235953 -0.8840639 -13.2877124 -2.0040626 0.6793130 2.9762707 4.2571479 2.6529804 -13.2877124 1.7827214 0.7827633 3.4716629 0.0670012
ENSG00000095110 2.5377699 2.0815106 2.738244 10.557028 0.0007171 0.2686666 ENSG00000095110 NXPE1 neurexophilin and PC-esterase domain family member 1 11 114518934 114559881 protein_coding HGNC:28527 0.3952350 0.7951926 -0.1847082 -13.2877124 0.6930850 1.2830725 2.8306529 3.4739291 1.3969754 2.0992407 2.7165515 2.4406647 2.7976041 0.4115521
ENSG00000131459 2.3697160 2.4948866 2.833943 10.576042 0.0007326 0.2686666 ENSG00000131459 GFPT2 glutamine-fructose-6-phosphate transaminase 2 5 180300698 180353336 protein_coding HGNC:4242 -0.2070947 0.9315885 -1.9584542 0.4072603 -0.4944322 -13.2877124 2.9796356 3.0085036 3.8373350 3.6646082 2.3454143 3.1508168 3.3329052 -0.2438122
ENSG00000158747 -1.5538785 -1.2830623 5.731055 12.372970 0.0007458 0.2686666 ENSG00000158747 NBL1 NBL1, DAN family BMP antagonist 1 19596979 19658456 protein_coding HGNC:7650 5.3242079 5.0450480 6.1115675 6.1714591 5.9813091 6.3262545 4.5635439 4.0779874 3.1691770 4.4739164 4.4115813 4.4430854 4.0452787 5.8977124
ENSG00000233151 6.3188897 6.1884972 6.565700 10.887403 0.0007598 0.2686666 ENSG00000233151 CYP21A2 cytochrome P450 family 21 subfamily A member 2 HSCHR6_MHC_COX_CTG1 3476620 3479992 protein_coding HGNC:2600 -0.0663579 -13.2877124 1.7676828 2.7230727 0.8047318 0.4950146 0.9898794 -13.2877124 8.8133576 4.2089864 8.2448121 7.3301920 7.2347504 1.2346184
ENSG00000168542 1.5238446 0.9181041 10.663738 12.287733 0.0007660 0.2686666 ENSG00000168542 COL3A1 collagen type III alpha 1 chain 2 188974373 189012746 protein_coding HGNC:2201 7.4318224 8.7197772 8.0236926 8.6326064 7.6478074 8.3067740 8.9566955 9.0236065 10.2008988 8.7687707 9.2812328 9.0476371 9.5145870 8.2034410
ENSG00000006042 -1.5534270 -0.6431837 4.594949 12.285111 0.0007841 0.2686666 ENSG00000006042 TMEM98 transmembrane protein 98 17 32927910 32945106 protein_coding HGNC:24529 4.3519042 4.1391589 4.4132342 4.1934590 4.4607339 5.6121446 3.4124339 2.8014869 3.3460825 2.7801062 3.2705472 3.0460677 3.2114200 4.6300914
ENSG00000105974 -1.5785927 -0.9154915 7.806310 12.071749 0.0008302 0.2769953 ENSG00000105974 CAV1 caveolin 1 7 116524994 116561179 protein_coding HGNC:1527 7.6338804 7.9316748 8.8713139 9.2146877 8.1028748 8.0680446 7.0501544 6.7896952 5.4626861 7.5499288 7.0762120 7.3324272 6.5812752 8.4154073
ENSG00000144355 -5.5321828 -2.5593125 4.837066 10.784164 0.0008753 0.2845505 ENSG00000144355 DLX1 distal-less homeobox 1 2 172084740 172089677 protein_coding HGNC:2914 3.7035981 5.1025980 6.8673383 7.4976258 2.0782416 1.7683533 -0.2600085 0.2025870 -13.2877124 4.0641814 2.9084321 3.5990727 -0.5951383 5.8764889
ENSG00000260735 1.1424049 0.6689868 6.508036 11.731994 0.0009457 0.2997499 ENSG00000260735 uncharacterized LOC100505915 16 15103135 15103355 transcribed_processed_pseudogene 5.3744619 5.7726942 4.9329342 4.7857540 5.0200759 4.8592029 6.3109521 6.1399053 6.1164620 5.7240661 5.9487093 5.8407558 6.1917444 5.1683035
ENSG00000111907 2.0446962 2.1428290 4.357473 11.504141 0.0009903 0.3020452 ENSG00000111907 TPD52L1 TPD52 like 1 6 125119049 125264407 protein_coding HGNC:12006 1.9117027 3.6835880 3.2608632 3.6567267 3.6184814 5.1763573 4.3243903 5.6543636 5.5090133 5.0900317 6.2215990 5.7640250 5.2722483 3.8621548
ENSG00000278312 9.5608434 9.1764310 4.771702 15.605808 0.0010223 0.3020452 ENSG00000278312 LENG9 leukocyte receptor cluster member 9 HSCHR19LRC_COX1_CTG3_1 368305 370225 protein_coding HGNC:16306 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 6.2152859 5.9861432 5.2160039 5.3057507 5.2615752 5.5202978 -13.2877124
ENSG00000198846 -3.5931351 -1.7499020 3.335076 10.549668 0.0010345 0.3020452 ENSG00000198846 TOX thymocyte selection associated high mobility group box 8 58805412 59119147 protein_coding HGNC:18988 0.3311124 2.7501423 3.0707197 3.5282032 1.5029604 0.1495846 -2.4843965 -0.4134937 -2.3989996 1.2084542 -0.6186657 0.5666554 -1.4226260 2.4090870
ENSG00000188783 1.8974273 0.2266760 4.392720 11.490059 0.0010483 0.3020452 ENSG00000188783 PRELP proline and arginine rich end leucine rich repeat protein 1 203475806 203491352 protein_coding HGNC:9357 1.6073246 2.5241216 1.4398226 0.4104822 -0.9024863 0.9402931 3.3240039 3.5795205 2.6241166 1.6779637 1.6574132 1.6677250 3.2292949 1.3500236
ENSG00000105971 -1.3380731 -0.4558928 5.558588 11.380772 0.0010856 0.3058447 ENSG00000105971 CAV2 caveolin 2 7 116287380 116508541 protein_coding HGNC:1528 5.0413961 4.4792503 5.4526755 5.5437594 5.8958272 5.4302352 3.5735000 3.8398038 3.6135955 4.2147561 4.7407631 4.5016009 3.6804751 5.3712041
ENSG00000148824 -1.0527820 0.8278007 6.168384 11.004250 0.0012549 0.3434807 ENSG00000148824 MTG1 mitochondrial ribosome associated GTPase 1 10 133394094 133422520 protein_coding HGNC:32159 4.4527644 4.8395342 5.2199675 5.3781255 5.3354561 5.0858668 4.3179588 3.5257346 3.1931740 6.2490492 5.4134832 5.8909311 3.7587509 5.0855441
ENSG00000103888 -1.1085896 0.8291818 7.999369 10.858855 0.0013265 0.3434807 ENSG00000103888 CEMIP cell migration inducing hyaluronidase 1 15 80779343 80951776 protein_coding HGNC:29213 5.9623688 6.3215520 5.6873390 5.8582669 5.1780956 5.7385080 3.9422993 5.8816682 5.1809298 6.8576477 6.2283770 6.5770531 5.2043559 5.8306425
ENSG00000148180 -1.1363838 -0.4491221 7.387349 10.757326 0.0013816 0.3434807 ENSG00000148180 GSN gelsolin 9 121207794 121332843 protein_coding HGNC:4620 6.9772067 6.7386078 6.9365661 7.6434110 6.8176347 7.8083136 5.7671008 6.2835602 5.5747461 6.6384431 6.7432739 6.6918104 5.9070577 7.2162022
ENSG00000196569 -0.2901248 1.2513298 6.006351 10.680730 0.0014293 0.3434807 ENSG00000196569 LAMA2 laminin subunit alpha 2 6 128883138 129516566 protein_coding HGNC:6482 2.7090433 4.4897462 2.9872528 3.3073513 4.4879952 2.4283075 2.0458085 2.4543288 2.8502025 3.3657356 4.6733816 4.1629035 2.4871985 3.6372561
ENSG00000181744 -2.2714461 -2.4062926 3.352766 10.283800 0.0015016 0.3434807 ENSG00000181744 DIPK2A divergent protein kinase domain 2A 3 143971823 144048719 protein_coding HGNC:28490 1.4498973 1.8117513 2.4798884 3.0370130 1.9445721 3.2204583 -1.5836012 0.9470549 -1.0514679 2.7289351 -1.3024148 1.8145726 -0.1286515 2.4681086
ENSG00000226065 8.5078315 0.0000000 3.295672 15.495248 0.0015083 0.3434807 ENSG00000226065 ZBTB45P2 2 110383112 110384642 processed_pseudogene HGNC:49228 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 2.8361803 2.7622806 6.1702093 -13.2877124 -13.2877124 -13.2877124 4.8402976 -13.2877124
ENSG00000112902 -1.6653262 -0.2606195 6.334418 10.506988 0.0015311 0.3434807 ENSG00000112902 SEMA5A semaphorin 5A 5 9035033 9546075 protein_coding HGNC:10736 3.4433596 3.6562657 4.1885450 4.7174597 4.2890476 3.1404417 2.0433001 2.2571956 1.8651979 4.5033130 3.3108363 4.0269262 2.0641544 4.0059354
ENSG00000148677 2.8197176 3.9848936 2.735086 8.837992 0.0015868 0.3434807 ENSG00000148677 ANKRD1 ankyrin repeat domain 1 10 90912096 90921087 protein_coding HGNC:15819 -1.0978075 -13.2877124 -13.2877124 -13.2877124 1.5217825 0.3057745 2.3694352 1.9093038 2.4552099 1.0988716 4.4662726 3.5997010 2.2637951 -0.3911705
ENSG00000075643 2.8386764 2.0649419 3.382904 9.390120 0.0015933 0.3434807 ENSG00000075643 MOCOS molybdenum cofactor sulfurase 18 36187497 36272157 protein_coding HGNC:18234 0.5699829 -1.9721269 -2.0565032 -0.6941789 -13.2877124 0.5138717 1.6870997 0.2735994 2.9192672 1.5735563 1.0674997 1.3426040 1.9992213 -0.5756803
ENSG00000102802 4.1509972 2.7024915 3.142821 8.799562 0.0015972 0.3434807 ENSG00000102802 MEDAG mesenteric estrogen dependent adipogenesis 13 30906271 30925572 protein_coding HGNC:25926 0.6577141 -13.2877124 -13.2877124 -0.1399224 -13.2877124 1.6463046 2.8846302 -13.2877124 4.7776542 1.7032615 2.6147249 2.2298074 3.5366631 -0.0954820
ENSG00000182240 1.1043848 1.3453198 4.548622 10.373401 0.0016400 0.3434807 ENSG00000182240 BACE2 beta-secretase 2 21 41167801 41282530 protein_coding HGNC:934 3.2034854 3.4807324 2.3041115 3.5134911 4.1041556 3.1040424 3.6559463 3.4571002 4.1989644 4.1748481 3.9855702 4.0833112 3.8057537 3.3815173
ENSG00000143315 1.6429707 1.3258019 5.009068 10.342236 0.0016615 0.3434807 ENSG00000143315 PIGM phosphatidylinositol glycan anchor biosynthesis class M 1 160024953 160031990 protein_coding HGNC:18858 1.4387245 2.2243602 2.1050518 2.4317280 0.6719038 -0.0964804 2.4658525 3.3109986 3.6886711 3.2528071 2.7980997 3.0432941 3.2399809 1.7085448
ENSG00000164125 1.8856113 2.5727082 4.538921 10.244245 0.0016679 0.3434807 ENSG00000164125 GASK1B golgi associated kinase 1B 4 158124474 158173318 protein_coding HGNC:25312 3.4712746 4.0420638 0.6178439 3.1169291 2.1501496 -0.0178070 1.9483474 3.7735701 5.7978903 4.6666281 5.5761416 5.1919011 4.6082002 2.8480131
ENSG00000143369 -0.6745513 -1.1691978 6.443398 10.227770 0.0017156 0.3434807 ENSG00000143369 ECM1 extracellular matrix protein 1 1 150508062 150513789 protein_coding HGNC:3153 6.0675234 6.3192123 6.3876635 6.4220226 6.7211071 6.4197257 5.9323274 5.4272164 5.1763239 4.9542330 5.4129737 5.2017605 5.5469528 6.4023153
ENSG00000152495 2.2002841 1.4749249 4.540210 10.201133 0.0017269 0.3434807 ENSG00000152495 CAMK4 calcium/calmodulin dependent protein kinase IV 5 111223653 111494886 protein_coding HGNC:1464 3.0223611 0.5696447 0.5461037 0.7817500 -2.5730290 -13.2877124 2.2205714 1.1802790 2.7783160 1.4995505 1.7025990 1.6046440 2.2003261 1.1106552
ENSG00000181333 -7.0850333 -1.4223913 2.926464 11.063842 0.0017270 0.3434807 ENSG00000181333 HEPHL1 hephaestin like 1 11 94021354 94114208 protein_coding HGNC:30477 2.1381431 1.2475982 2.4487366 1.3339149 -0.0498213 -13.2877124 -13.2877124 -13.2877124 -13.2877124 0.0161368 0.1883313 0.1048009 -13.2877124 1.3898239
ENSG00000142149 -3.2500569 -0.9228285 3.342748 9.565748 0.0017286 0.3434807 ENSG00000142149 HUNK hormonally up-regulated Neu-associated kinase 21 31873020 32044633 protein_coding HGNC:13326 2.1065115 -0.1284339 -0.0610654 4.0908117 1.6054128 1.5098073 2.6185786 -3.3725500 -3.3592236 -0.1670177 0.7416025 0.3576725 1.0784841 2.2784767
ENSG00000270554 1.6150678 1.2749664 3.770701 10.062725 0.0017365 0.3434807 ENSG00000270554 EIF3EP4 3 182843521 182844619 processed_pseudogene HGNC:37921 2.9470098 3.6686841 2.9535133 3.7501095 3.7052760 3.6733895 5.2344128 4.1009549 5.1548118 5.0652920 4.1673375 4.6850779 4.9137712 3.4904058
ENSG00000162545 -2.5091938 -1.4013843 4.505200 10.211287 0.0017482 0.3434807 ENSG00000162545 CAMK2N1 calcium/calmodulin dependent protein kinase II inhibitor 1 1 20482391 20486210 protein_coding HGNC:24190 3.8049092 3.5510649 5.2475352 5.5650234 4.3016841 2.3605955 1.8620419 2.1737661 1.0732773 3.3180707 2.5920745 3.0002660 1.7727898 4.5012863
ENSG00000235253 1.1142033 0.9294894 4.989509 10.184312 0.0017702 0.3434807 ENSG00000235253 EEF1A1P50 5 132942932 132945050 processed_pseudogene HGNC:56207 4.6799850 5.2113143 5.1326866 4.1581075 4.7155894 5.0842918 5.9970891 5.9461628 5.6462955 5.5271213 6.0522798 5.8134652 5.8712796 4.8729711
ENSG00000230383 2.1956054 0.8236000 2.318578 8.670107 0.0018105 0.3434807 ENSG00000230383 RPL6P19 7 137721985 137722846 processed_pseudogene HGNC:36754 1.4336565 1.9315931 1.8570187 3.2474430 0.7332103 1.8663169 3.8954503 3.0687460 4.6145888 2.3003988 3.0792926 2.7417839 3.9930676 2.0556469
ENSG00000225987 0.7885894 2.8181067 2.587593 8.732255 0.0018672 0.3434807 ENSG00000225987 PBX2 PBX homeobox 2 HSCHR6_MHC_APD_CTG1 3517335 3522785 protein_coding HGNC:8633 0.8835137 -13.2877124 3.3954851 2.5239887 -0.5872293 0.7033532 1.8666145 2.2214775 3.2426202 4.9726695 3.9372839 4.5459330 2.5668624 1.7664998
ENSG00000226618 4.5702972 -4.3744523 3.764198 8.759847 0.0018957 0.3434807 ENSG00000226618 PRRC2A proline rich coiled-coil 2A HSCHR6_MHC_MANN_CTG1 2925761 2942812 protein_coding HGNC:13918 -13.2877124 -13.2877124 -13.2877124 -13.2877124 0.9364853 -13.2877124 4.5011603 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 2.9162104 -1.6481003
ENSG00000176857 1.0429933 1.3569858 4.851922 10.011359 0.0019053 0.3434807 ENSG00000176857 GJA1P1 5 109051315 109052457 processed_pseudogene HGNC:4275 4.7302310 4.8741871 5.0661363 5.2589574 3.9783605 4.2766440 5.2802763 5.3195163 6.1821968 6.0098546 6.1894272 6.1024331 5.6573533 4.7620527
ENSG00000111669 -0.7661297 -0.7346077 6.870330 9.964837 0.0019133 0.3434807 ENSG00000111669 TPI1 triosephosphate isomerase 1 12 6867119 6870948 protein_coding HGNC:12009 7.3933289 7.2269048 7.4835902 7.9954247 7.5012874 7.4982438 6.6729676 6.5877332 6.5813319 6.7016991 6.7358727 6.7188871 6.6146196 7.5366494
ENSG00000273993 -1.0241372 0.0000669 5.497535 9.962121 0.0019236 0.3434807 ENSG00000273993 PTPRK protein tyrosine phosphatase receptor type K HSCHR6_1_CTG8 313977 870008 protein_coding HGNC:9674 3.1478549 3.9477183 5.4736642 4.1079463 5.1784318 4.3075709 3.7747625 3.0450973 3.0004466 4.5656233 4.0184311 4.3178159 3.3192212 4.5646636
ENSG00000087302 1.3327870 0.8454574 9.330948 9.893136 0.0019710 0.3457575 ENSG00000087302 RTRAF RNA transcription, translation and transport factor 14 51989514 52010694 protein_coding HGNC:23169 6.6834916 6.7949252 7.3100100 7.1441817 7.7099776 7.2737114 7.4446714 8.5053565 8.2180861 6.7332951 8.2201387 7.6603390 8.1213097 7.1932494
ENSG00000176532 3.5167117 2.7660340 3.914092 8.935373 0.0020140 0.3457575 ENSG00000176532 PRR15 proline rich 15 7 29563835 29567293 protein_coding HGNC:22310 2.9090494 1.1241580 0.0433809 -13.2877124 0.5068172 0.6126111 3.4343995 1.6298448 6.1161563 5.4246668 2.4288033 4.5950520 4.7947895 1.1881407
ENSG00000128266 -3.9827800 -3.4325573 3.117383 8.708387 0.0020181 0.3457575 ENSG00000128266 GNAZ G protein subunit alpha z 22 23070519 23125032 protein_coding HGNC:4395 -1.8610335 1.6398744 3.7529539 3.4249202 2.4360336 2.3493356 -13.2877124 -0.0218512 -13.2877124 0.0153677 -13.2877124 -0.9844896 -1.6065210 2.6675509
ENSG00000196782 -1.3891209 -2.3206365 3.824126 9.755028 0.0021028 0.3497212 ENSG00000196782 MAML3 mastermind like transcriptional coactivator 3 4 139716753 140154184 protein_coding HGNC:16272 4.2586035 3.1958447 3.3913006 2.5443926 2.3670017 1.8200605 -0.2732002 0.9685369 0.3970319 -0.3569510 -0.4074746 -0.3819916 0.4510600 3.1516463
ENSG00000204351 -6.8241320 -1.3828876 2.785575 10.426217 0.0021196 0.3497212 ENSG00000204351 SKIC2 SKI2 subunit of superkiller complex 6 31959116 31969818 protein_coding HGNC:10898 0.7278447 0.6901033 1.4827007 3.8512223 2.9810487 1.8104707 -13.2877124 -13.2877124 -13.2877124 -0.2796182 1.3460446 0.7510137 -13.2877124 2.4105072
ENSG00000171385 2.3390865 2.5530601 3.934618 9.332379 0.0021240 0.3497212 ENSG00000171385 KCND3 potassium voltage-gated channel subfamily D member 3 1 111770662 111989668 protein_coding HGNC:6239 -0.8368723 -0.6569470 -1.0045111 0.6189772 1.9249227 -0.7555294 0.4178012 3.1758968 2.7028698 0.8979777 3.9900783 3.1500555 2.4926377 0.3444104
ENSG00000183153 0.6334952 1.0580381 6.397517 9.650359 0.0021892 0.3530419 ENSG00000183153 GJD3 gap junction protein delta 3 17 40360652 40364737 protein_coding HGNC:19147 6.9784072 7.0465706 6.9980905 6.9982432 7.1373893 7.3978994 7.1288165 7.4642610 7.9752421 8.0270836 8.2104334 8.1216692 7.5652651 7.1005099
ENSG00000230399 2.1256440 2.6571887 2.276203 8.225023 0.0021999 0.3530419 ENSG00000230399 RBBP8P1 X 118632375 118634616 protein_coding HGNC:39583 0.0208556 0.5214930 -1.1446704 1.2261984 -13.2877124 0.4246502 1.9574986 2.4427203 1.4583789 3.2172755 1.6559553 2.6382599 2.0082158 0.1340316
ENSG00000169203 1.7991046 1.2700007 3.825154 9.462875 0.0022413 0.3551926 ENSG00000169203 NPIPB12 nuclear pore complex interacting protein family member B12 16 29483534 29506408 protein_coding HGNC:37491 2.7832523 3.3268760 1.4323683 3.7646143 2.8462251 1.5140849 5.1168490 4.2887294 4.5920167 3.3886389 5.3555035 4.6841199 4.7071254 2.8498638
ENSG00000183214 3.8462418 3.9937323 3.717367 8.243845 0.0022761 0.3562542 ENSG00000183214 MICA MHC class I polypeptide-related sequence A HSCHR6_MHC_QBL_CTG1 2655411 2671966 protein_coding HGNC:7090 1.1626116 -13.2877124 1.0436651 1.2301655 -13.2877124 -13.2877124 4.1875986 -13.2877124 4.8628160 5.2284999 -13.2877124 4.2285040 3.9793952 0.1475933
ENSG00000178404 -0.3213847 2.9866594 1.625742 7.871150 0.0023233 0.3576345 ENSG00000178404 CEP295NL CEP295 N-terminal like 17 78890579 78903217 protein_coding HGNC:44659 -13.2877124 -0.0834408 0.4200026 0.2060230 -13.2877124 -13.2877124 -0.4215192 -13.2877124 -1.1463237 2.3348125 2.3206842 2.3277657 -1.3237171 -0.8044264
ENSG00000186918 -1.5919006 -1.7991359 4.510161 9.533873 0.0023414 0.3576345 ENSG00000186918 ZNF395 zinc finger protein 395 8 28345590 28402701 protein_coding HGNC:18737 4.9828514 3.6470477 4.7710204 5.1661523 2.2525041 2.5994982 2.8576144 2.2572852 1.2264086 3.0572900 2.5834791 2.8397488 2.2599157 4.2999408
ENSG00000203811 1.0630182 0.9857453 5.938284 9.394286 0.0024506 0.3698656 ENSG00000203811 H3C14 H3 clustered histone 14 1 149840687 149841208 protein_coding HGNC:20503 5.5082000 5.7492821 4.9697999 5.1242265 4.8244717 5.5152342 6.3106428 6.2305063 6.1631156 6.7222501 5.6122314 6.2714640 6.2360167 5.3194460
ENSG00000198553 1.6938401 1.1231885 5.122035 9.347118 0.0025251 0.3740648 ENSG00000198553 KCNRG potassium channel regulator 13 50015254 50020922 protein_coding HGNC:18893 5.2578954 4.6969700 4.8193643 4.5324686 3.1168456 2.1220157 6.4506033 5.4794390 6.1290362 5.7730714 4.9500407 5.4194674 6.0737174 4.4218447
ENSG00000134901 1.8429187 1.3460793 2.667741 8.370198 0.0025844 0.3740648 ENSG00000134901 POGLUT2 protein O-glucosyltransferase 2 13 102784281 102799040 protein_coding HGNC:19350 1.4452590 1.0981177 0.6943641 0.0643241 0.7431875 0.2641196 4.2506809 2.1573096 3.0351185 2.6422730 1.7178543 2.2528719 3.4011866 0.7938834
ENSG00000114270 -1.9038619 -0.7568064 5.355342 9.278434 0.0025855 0.3740648 ENSG00000114270 COL7A1 collagen type VII alpha 1 chain 3 48564073 48595329 protein_coding HGNC:2214 2.3104672 3.2923502 3.8488815 3.8262343 2.8003222 2.5502163 2.7305700 0.8042048 -1.0568123 2.5348562 2.4348633 2.4857259 1.5630043 3.2268664
ENSG00000172349 -0.2708952 0.8275232 7.777414 9.196165 0.0026612 0.3740648 ENSG00000172349 IL16 interleukin 16 15 81159575 81314058 protein_coding HGNC:5980 4.9293966 4.5153993 4.9590065 4.8722044 5.0005743 4.9613886 4.1964682 4.7831125 4.4631532 5.9895126 5.5896772 5.8034025 4.5008976 4.8818315
ENSG00000138944 -2.6675472 -3.7330705 3.108367 8.502722 0.0026689 0.3740648 ENSG00000138944 SHISAL1 shisa like 1 22 44243665 44312951 protein_coding HGNC:29335 1.5992202 -2.1271602 1.6946248 2.6736564 1.4225737 -1.6409377 -0.9531402 -2.2027712 -1.6046125 -1.5810696 -13.2877124 -2.5806380 -1.4974303 1.4039360
ENSG00000027075 3.6061638 3.6567498 2.562007 8.071848 0.0026980 0.3740648 ENSG00000027075 PRKCH protein kinase C eta 14 61187559 61550980 protein_coding HGNC:9403 -13.2877124 -1.7160450 -13.2877124 -13.2877124 2.1125290 0.7708595 3.4201706 3.8593743 6.5515330 4.1069991 5.4343826 4.9182528 5.3100953 0.0784855
ENSG00000196139 -1.2286393 2.4942865 2.252457 7.684288 0.0027061 0.3740648 ENSG00000196139 AKR1C3 aldo-keto reductase family 1 member C3 10 5035354 5107686 protein_coding HGNC:386 2.3877477 1.0672057 -13.2877124 2.4102982 1.1014968 3.2071057 -13.2877124 0.0175386 1.6216712 4.8272340 2.2378075 4.0489895 0.4470131 2.0015284
ENSG00000133059 -1.8212050 -1.1722761 4.083164 9.137660 0.0027852 0.3740648 ENSG00000133059 DSTYK dual serine/threonine and tyrosine protein kinase 1 205142505 205211702 protein_coding HGNC:29043 2.7954945 1.1495384 1.7634558 1.8743957 2.1330897 2.5172918 0.0021106 0.0740820 0.0360137 0.4589195 1.0937461 0.8109720 0.0377013 2.1339100
ENSG00000234338 1.3444044 0.6880803 4.406182 9.120544 0.0027870 0.3740648 ENSG00000234338 7 64835280 64836882 processed_pseudogene 3.9045970 3.2636459 3.7393544 3.2760724 3.6463705 4.2496572 4.2364180 5.2260309 5.0901856 4.1788962 4.5589341 4.3813927 4.9123442 3.7218724
ENSG00000148737 1.1913416 1.0711400 5.597446 9.095833 0.0028013 0.3740648 ENSG00000148737 TCF7L2 transcription factor 7 like 2 10 112950247 113167678 protein_coding HGNC:11641 4.6903072 5.2093584 4.0480518 4.7330388 3.7055343 6.5920196 5.6612414 4.9936838 6.2270402 4.9612560 6.6394567 6.0317434 5.7130906 5.1663700
ENSG00000182389 3.9095497 6.4905594 1.626634 9.907858 0.0028212 0.3740648 ENSG00000182389 CACNB4 calcium voltage-gated channel auxiliary subunit beta 4 2 151832771 152099167 protein_coding HGNC:1404 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -2.5030285 -1.5282403 0.8355902 3.3770190 2.6057117 -2.5195115 -13.2877124
ENSG00000248905 -1.1552121 -0.4314471 8.738746 9.028201 0.0028658 0.3740648 ENSG00000248905 FMN1 formin 1 15 32765544 33194714 protein_coding HGNC:3768 7.0423226 5.4786355 6.7616918 6.6843926 6.8654091 7.2878039 4.9005166 4.7142861 5.4209539 6.4085150 5.4516907 6.0080135 5.0438182 6.7827123
ENSG00000187800 2.4836795 3.0404997 4.122015 8.671321 0.0028781 0.3740648 ENSG00000187800 PEAR1 platelet endothelial aggregation receptor 1 1 156893698 156916429 protein_coding HGNC:33631 -2.3953745 2.1167380 0.0216872 -1.1991527 -0.5135595 -13.2877124 3.1556225 3.4521920 3.2983326 1.2679953 5.5035510 4.5781727 3.3071338 0.1545534
ENSG00000179564 0.9704118 0.3542652 6.987003 8.964784 0.0029497 0.3740648 ENSG00000179564 LSMEM2 leucine rich single-pass membrane protein 2 3 50279087 50288114 protein_coding HGNC:26781 6.9564092 6.9864450 6.9428061 6.3393825 6.8529220 6.5044959 7.8624675 7.4105646 7.5890488 7.3010587 6.9498105 7.1360981 7.6327662 6.7843692
ENSG00000156535 -1.2243937 -0.5302166 6.224155 8.958453 0.0029600 0.3740648 ENSG00000156535 CD109 CD109 molecule 6 73695785 73828316 protein_coding HGNC:21685 3.3477650 3.7942957 4.1480996 4.4165842 3.1207182 3.8299759 2.7158027 2.6998756 1.7009191 3.2020998 3.3141061 3.2591896 2.4434409 3.8423077
ENSG00000169136 2.0030478 1.2252246 4.856737 8.893795 0.0030794 0.3740648 ENSG00000169136 ATF5 activating transcription factor 5 19 49928702 49933935 protein_coding HGNC:790 4.4045693 3.3831676 1.3810181 2.6675048 3.6918318 4.0415856 4.6345724 4.9246565 6.0827988 4.7543768 4.8464596 4.8011530 5.3574566 3.5435182
ENSG00000125414 3.1138209 0.1484581 4.724751 8.781524 0.0031324 0.3740648 ENSG00000125414 MYH2 myosin heavy chain 2 17 10521148 10549700 protein_coding HGNC:7572 -1.8549408 -13.2877124 -2.0224197 -13.2877124 2.6897983 4.9303165 4.1680736 2.5091883 4.2752478 1.6665012 -0.4832445 0.9596975 3.8424138 2.6425523
ENSG00000165152 -2.7977979 -1.2624622 2.755629 8.154241 0.0031699 0.3740648 ENSG00000165152 PGAP4 post-GPI attachment to proteins GalNAc transferase 4 9 101473170 101533537 protein_coding HGNC:28180 2.0133050 1.3084855 1.3307982 2.0582784 0.3108136 1.9021431 -13.2877124 -1.4678965 -0.4549430 0.1539000 0.3265316 0.2427964 -1.4591157 1.5987039
ENSG00000069943 1.1553661 1.1560524 6.321832 8.794801 0.0031891 0.3740648 ENSG00000069943 PIGB phosphatidylinositol glycan anchor biosynthesis class B 15 55318960 55355648 protein_coding HGNC:8959 6.1134852 7.0372985 6.9187816 6.3238582 6.6319656 6.7655261 6.8872141 7.6359346 8.2982353 7.3063598 8.2648521 7.8637836 7.7189712 6.6669199
ENSG00000227715 -6.2400119 -4.9438020 5.031909 7.930225 0.0031993 0.3740648 ENSG00000227715 HLA-A major histocompatibility complex, class I, A HSCHR6_MHC_MCF_CTG1 1286636 1289979 protein_coding HGNC:4931 1.1447845 -0.4907704 7.4368742 7.7647597 0.5907352 -13.2877124 0.1601341 -0.4957518 -13.2877124 -13.2877124 1.7452167 0.7452597 -0.7157363 6.0414093
ENSG00000082397 1.7721109 0.7684464 4.258648 8.762204 0.0032345 0.3740648 ENSG00000082397 EPB41L3 erythrocyte membrane protein band 4.1 like 3 18 5392381 5630700 protein_coding HGNC:3380 2.6860561 2.6672089 0.7888744 1.6494453 1.5960554 1.5320785 3.4754477 2.7848455 4.8588413 2.3122885 3.0555178 2.7312441 3.9705999 1.9737670
ENSG00000149294 0.3906273 2.9733003 2.369297 7.534296 0.0032454 0.3740648 ENSG00000149294 NCAM1 neural cell adhesion molecule 1 11 112961275 113278436 protein_coding HGNC:7656 -0.0941716 1.1457831 -13.2877124 -13.2877124 2.7769847 -13.2877124 2.5459207 2.4420334 -13.2877124 0.6678485 3.3465369 2.5559069 1.9099624 0.7375362
ENSG00000206460 3.0936817 -5.1533805 3.310273 8.218502 0.0032619 0.3740648 ENSG00000206460 CDSN corneodesmosin HSCHR6_MHC_QBL_CTG1 2373089 2378448 protein_coding HGNC:1802 -13.2877124 -13.2877124 2.2164260 2.6874030 -13.2877124 -13.2877124 3.8117024 -13.2877124 4.6870256 -13.2877124 -13.2877124 -13.2877124 3.7297966 0.8861381
ENSG00000175229 -2.7291268 -0.9365568 3.048932 8.290517 0.0032948 0.3740648 ENSG00000175229 GAL3ST3 galactose-3-O-sulfotransferase 3 11 66040765 66049161 protein_coding HGNC:24144 2.9326682 1.4506121 3.1167625 3.1802473 1.7599164 1.0631930 -0.5717440 1.1401831 -1.0711029 2.6374447 1.7633627 2.2656124 0.1604246 2.4847313
ENSG00000152953 1.4733193 1.7543486 4.488598 8.720222 0.0033109 0.3740648 ENSG00000152953 STK32B serine/threonine kinase 32B 4 5051480 5500994 protein_coding HGNC:14217 2.0104547 3.4810460 -0.0632132 2.3023773 1.9653096 1.8289975 3.5938519 3.4466466 3.6365750 4.0691225 3.9243554 3.9985540 3.5612931 2.2500939
ENSG00000176435 1.2347353 3.4979254 2.550614 7.478689 0.0033760 0.3740648 ENSG00000176435 CLEC14A C-type lectin domain containing 14A 14 38254000 38256093 protein_coding HGNC:19832 -13.2877124 2.0525223 -13.2877124 -13.2877124 -13.2877124 -13.2877124 2.0295320 -0.4845903 0.1153196 3.0120820 3.7272137 3.4135121 0.9710104 -0.5322662
ENSG00000152234 -0.3844144 -1.1059029 5.730173 8.658595 0.0033918 0.3740648 ENSG00000152234 ATP5F1A ATP synthase F1 subunit alpha 18 46080248 46104334 protein_coding HGNC:823 5.3195284 5.5987609 5.5612405 6.7471044 5.6574733 5.7985987 5.2086626 4.8767839 5.0063681 5.1553524 4.3734475 4.8167359 5.0371147 5.8628077
ENSG00000111325 0.8410817 -0.1488178 7.375281 8.651855 0.0033948 0.3740648 ENSG00000111325 OGFOD2 2-oxoglutarate and iron dependent oxygenase domain containing 2 12 122974580 122980043 protein_coding HGNC:25823 7.1526406 7.2861520 6.6663968 7.0390593 7.5218723 6.9842689 8.0114418 8.2127661 7.5300935 6.7834097 7.2052411 7.0096887 7.9455486 7.1324576
ENSG00000204977 1.2623174 0.8481954 8.077950 8.586807 0.0034965 0.3740648 ENSG00000204977 TRIM13 tripartite motif containing 13 13 49995888 50020481 protein_coding HGNC:9976 6.2680629 5.3484128 5.2572103 5.0824798 4.8715573 4.7855727 6.4028731 6.0262255 6.5182465 6.2185886 5.8478968 6.0451159 6.3306333 5.3621890
ENSG00000262102 -8.7942701 -8.7942701 4.377038 9.639960 0.0035495 0.3740648 ENSG00000262102 DSEL dermatan sulfate epimerase like HSCHR18_2_CTG2 152309 162707 protein_coding HGNC:18144 -13.2877124 -13.2877124 3.5429333 3.0489204 2.8044233 2.5099253 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 2.4424250
ENSG00000101255 1.3507506 1.4974590 4.947749 8.577765 0.0035563 0.3740648 ENSG00000101255 TRIB3 tribbles pseudokinase 3 20 362835 397559 protein_coding HGNC:16228 2.9769996 4.8417756 3.2736725 3.9562689 2.8053816 3.7957623 4.3816950 4.8346677 5.3531886 4.7046984 5.4571779 5.1294516 4.9110089 3.7834787
ENSG00000087510 -3.2349948 0.6158484 2.978051 7.812619 0.0035588 0.3740648 ENSG00000087510 TFAP2C transcription factor AP-2 gamma 20 56629306 56639283 protein_coding HGNC:11744 0.6225443 2.5387984 2.1338587 2.9598771 1.9201134 0.7041655 0.0687795 -13.2877124 -13.2877124 3.5320304 1.9356766 2.9442285 -1.5159081 2.0550707
ENSG00000134668 -2.0840120 -1.5503623 3.940140 8.556906 0.0035792 0.3740648 ENSG00000134668 SPOCD1 SPOC domain containing 1 1 31790422 31816022 protein_coding HGNC:26338 5.0137405 4.1357687 3.9389675 4.3683324 4.2477317 3.7683957 2.7937107 5.1681167 -1.7070487 4.3362448 1.5132396 3.5269427 3.8478396 4.3037866
ENSG00000054983 0.4407641 2.2847739 2.303416 7.517518 0.0035823 0.3740648 ENSG00000054983 GALC galactosylceramidase 14 87837820 87993665 protein_coding HGNC:4115 0.8399459 2.3686047 -0.3097796 -13.2877124 2.4501946 1.1529226 1.3453521 -0.4178583 1.8141017 4.6169137 2.6286637 3.9411995 1.1818156 1.3645539
ENSG00000093072 -0.7769501 1.5990353 2.116245 7.448115 0.0035897 0.3740648 ENSG00000093072 ADA2 adenosine deaminase 2 22 17178790 17258235 protein_coding HGNC:1839 1.8573178 0.1954270 0.1409775 -0.5210510 -0.3943236 1.1374740 -0.9526068 -1.0340658 -0.6813095 1.1889275 2.0843398 1.7050140 -0.8813046 0.6673190
ENSG00000146197 1.4003744 0.7299753 7.604679 8.529617 0.0035898 0.3740648 ENSG00000146197 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 6 35213956 35253079 protein_coding HGNC:13655 5.0151247 4.4755781 4.1598919 4.0181589 4.1424532 4.7001726 5.8468435 4.5707014 6.2652511 4.6640087 5.5693613 5.1865679 5.7209715 4.4629076
ENSG00000204469 -9.2402572 -6.1239037 4.775132 8.604227 0.0035929 0.3740648 ENSG00000204469 PRRC2A proline rich coiled-coil 2A 6 31620715 31637771 protein_coding HGNC:13918 4.3989246 4.9125458 -13.2877124 -0.7840059 -13.2877124 3.2126588 -13.2877124 -13.2877124 -13.2877124 0.9370377 -13.2877124 -0.0628869 -13.2877124 3.3473290
ENSG00000241644 3.0017075 6.4881744 1.543857 9.032215 0.0036240 0.3740648 ENSG00000241644 INMT indolethylamine N-methyltransferase 7 30697985 30757602 protein_coding HGNC:6069 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 1.4585479 1.9410815 2.2306264 2.0931055 -0.1263096 -13.2877124
ENSG00000122641 1.3558382 2.2179706 5.665736 8.518394 0.0036415 0.3740648 ENSG00000122641 INHBA inhibin subunit beta A 7 41667168 41705834 protein_coding HGNC:6066 3.8255523 3.6228992 3.1791135 1.9242611 1.6893211 1.4941007 3.3167886 4.2127491 4.1465930 3.6205037 5.8764565 5.1506984 3.9454200 2.9194133
ENSG00000020633 3.4267046 3.9808310 2.084078 8.129240 0.0036586 0.3740648 ENSG00000020633 RUNX3 RUNX family transcription factor 3 1 24899511 24965121 protein_coding HGNC:10473 -2.3500222 1.2960950 -13.2877124 -13.2877124 -13.2877124 -13.2877124 0.4061023 1.4897227 -1.3155403 2.0069026 3.4037457 2.8681623 0.5962119 -1.1777861
ENSG00000204389 -7.6709701 -7.6709701 3.341186 9.559661 0.0036997 0.3752345 ENSG00000204389 HSPA1A heat shock protein family A (Hsp70) member 1A 6 31815543 31817946 protein_coding HGNC:5232 4.0006976 2.9585515 -13.2877124 -13.2877124 4.1983427 4.2733044 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 3.3570030
ENSG00000169519 -0.9835489 -1.5698236 4.359521 8.377839 0.0039133 0.3892005 ENSG00000169519 METTL15 methyltransferase 15, mitochondrial 12S rRNA N4-cytidine 11 28108248 28527041 protein_coding HGNC:26606 3.1909523 2.7480915 3.8163380 3.3081213 2.9227402 3.3224315 2.4625364 1.0620070 2.3446322 1.9422281 1.1751605 1.6090855 2.0794058 3.2587438
ENSG00000156928 -1.4115251 -2.4719219 8.385059 8.337160 0.0039218 0.3892005 ENSG00000156928 MALSU1 mitochondrial assembly of ribosomal large subunit 1 7 23298739 23311729 protein_coding HGNC:21721 7.4071351 7.7336585 8.4397181 8.2299016 7.8062128 7.7093783 4.5910600 7.5596557 5.2061124 5.9861212 4.4024635 5.4014851 6.3789594 7.9298924
ENSG00000237165 -4.6130727 3.2730631 2.554476 7.673606 0.0039295 0.3892005 ENSG00000237165 CDSN corneodesmosin HSCHR6_MHC_MCF_CTG1 2459207 2464559 protein_coding HGNC:1802 -13.2877124 -13.2877124 2.3294549 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 4.4617959 -13.2877124 3.4618024 -13.2877124 -0.2553641
ENSG00000227761 1.0484001 -1.9501320 5.266557 8.269113 0.0040854 0.4015122 ENSG00000227761 BAG6 BAG cochaperone 6 HSCHR6_MHC_DBB_CTG1 2886791 2900476 protein_coding HGNC:13919 4.6597329 6.2837376 5.5447692 5.2517521 4.6276463 4.7911792 5.6108278 6.0932572 5.7323637 4.9134204 3.0258543 4.2585468 5.8270185 5.3241939
ENSG00000115317 2.2091250 1.0931918 7.125961 8.172255 0.0042409 0.4015789 ENSG00000115317 HTRA2 HtrA serine peptidase 2 2 74529596 74533350 protein_coding HGNC:14348 6.7375498 7.1653017 4.8660038 4.5614595 3.8090615 4.3299912 7.7650367 6.4936457 8.8347082 6.9965894 6.9806311 6.9886323 7.9928663 5.8122916
ENSG00000204851 2.0511298 0.9048684 4.754988 8.184744 0.0042529 0.4015789 ENSG00000204851 PNMA8B PNMA family member 8B 19 46486906 46495879 protein_coding HGNC:29206 2.4288049 1.4280727 -1.2408237 0.5371937 2.0981281 2.7446853 3.7397760 3.0648166 4.0159782 3.1964834 1.6393845 2.6185373 3.6593590 1.8027855
ENSG00000171790 1.3588117 0.9189487 6.432399 8.144955 0.0042983 0.4015789 ENSG00000171790 SLFNL1 schlafen like 1 1 41015589 41023237 protein_coding HGNC:26313 4.5425707 3.8985188 3.7780876 4.3041844 4.3496660 4.4598878 5.4003068 4.8926554 5.7236478 3.8228409 5.7379410 5.0772537 5.3783028 4.2490387
ENSG00000142910 2.8915301 2.7605651 2.915787 7.134872 0.0043353 0.4015789 ENSG00000142910 TINAGL1 tubulointerstitial nephritis antigen like 1 1 31576485 31587686 protein_coding HGNC:19168 -0.9069402 0.9392574 -13.2877124 3.8885102 -13.2877124 -13.2877124 3.6082837 1.6019684 3.5165389 1.6376450 4.1212064 3.3585283 3.1524692 1.5245035
ENSG00000176020 3.2133267 -5.1796057 3.380992 7.680206 0.0043373 0.4015789 ENSG00000176020 AMIGO3 adhesion molecule with Ig like domain 3 3 49716829 49719684 protein_coding HGNC:24075 -13.2877124 2.8374409 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 3.3435862 4.8406131 -13.2877124 -13.2877124 -13.2877124 3.6931833 0.2525792
ENSG00000278119 2.3629452 0.2587623 2.044481 6.974848 0.0043837 0.4015789 ENSG00000278119 GOLGA8J golgin A8 family member J HSCHR15_4_CTG8 2368159 2381905 protein_coding HGNC:38650 -1.5459673 -1.6510515 -2.6333001 -13.2877124 -0.1634424 -13.2877124 0.6465212 0.7183095 0.7681149 -1.7290477 -0.9917713 -1.3138159 0.7118429 -1.8066355
ENSG00000167306 0.9194999 1.1064990 6.178865 8.083225 0.0044268 0.4015789 ENSG00000167306 MYO5B myosin VB 18 49822789 50195164 protein_coding HGNC:7603 2.7945864 3.4697610 2.8415207 2.1079580 2.6826881 2.6128750 3.1191168 3.9828644 3.6315110 4.1724789 3.6237351 3.9240412 3.6203180 2.8085103
ENSG00000134986 1.0749670 0.8533131 6.408012 8.072726 0.0044456 0.4015789 ENSG00000134986 NREP neuronal regeneration related protein 5 111662621 111997464 protein_coding HGNC:16834 6.9310914 6.8634223 4.9939551 6.0960006 6.1694769 6.4066406 7.2820769 6.9593931 7.4229840 6.3830815 7.4997324 7.0468496 7.2342511 6.3679356
ENSG00000156030 -1.3367422 -0.6209897 5.053553 8.077037 0.0044607 0.4015789 ENSG00000156030 MIDEAS mitotic deacetylase associated SANT domain protein 14 73715122 73790285 protein_coding HGNC:19853 2.3548578 3.6524058 3.3938876 3.8110618 3.2287437 3.9071842 1.9256391 1.3729354 2.4324739 3.9125894 3.6427009 3.7839471 1.9741871 3.4728073
ENSG00000143387 -1.3866084 -0.8865103 5.393091 8.066585 0.0044705 0.4015789 ENSG00000143387 CTSK cathepsin K 1 150794880 150809577 protein_coding HGNC:2536 4.7246887 5.5058572 5.9623493 6.2984657 5.7404299 6.1603343 3.8064959 4.9516162 3.5445043 5.0839841 4.5685033 4.8491451 4.2378803 5.8155967
ENSG00000149932 -0.6476158 -1.3794176 4.421013 8.078856 0.0044899 0.4015789 ENSG00000149932 TMEM219 transmembrane protein 219 16 29940885 29973050 protein_coding HGNC:25201 5.3140843 5.6682740 5.6529967 6.2269900 5.7612729 5.6053531 5.3313879 4.6006279 4.8684297 4.8029983 4.0166178 4.4627375 4.9655682 5.7314643
ENSG00000111640 -0.8761762 -0.6709205 10.140524 8.047964 0.0044902 0.4015789 ENSG00000111640 GAPDH glyceraldehyde-3-phosphate dehydrogenase 12 6534512 6538374 protein_coding HGNC:4141 10.6426246 10.7133591 11.2048414 11.5811585 10.8842274 11.1613433 10.2902577 10.1173236 9.6014559 10.1454828 10.5147990 10.3419269 10.0314905 11.0681475
ENSG00000184557 -2.0198969 -2.3073967 4.020141 8.048287 0.0045196 0.4015789 ENSG00000184557 SOCS3 suppressor of cytokine signaling 3 17 78356778 78360077 protein_coding HGNC:19391 2.0741046 3.3343137 4.3968457 5.0975439 2.9192318 1.7772493 1.9490384 1.3826363 1.0346651 1.0573823 3.8242137 3.0219869 1.5054255 3.7476314
ENSG00000197915 1.8234717 1.4323877 8.392650 8.029865 0.0045296 0.4015789 ENSG00000197915 HRNR hornerin 1 152212076 152224193 protein_coding HGNC:20846 3.9711771 4.9344679 2.8945293 3.0676539 5.3260221 5.4433140 6.2506005 6.3431774 6.2464456 5.2240108 6.5255801 6.0168531 6.2807704 4.6019680
ENSG00000160298 1.3666167 0.5611312 3.563387 7.938783 0.0045775 0.4030135 ENSG00000160298 C21orf58 chromosome 21 open reading frame 58 21 46300181 46323875 protein_coding HGNC:1300 2.5775680 2.8211353 2.3445246 2.6374554 3.5669499 0.8432394 3.2451266 3.6396735 3.6277219 2.3264804 2.9769677 2.6880794 3.5154421 2.6623176
ENSG00000281216 -7.4104334 -7.4104334 3.067836 8.961803 0.0046361 0.4049923 ENSG00000281216 KIF26B kinesin family member 26B HSCHR1_1_CTG32_1 47982 407457 protein_coding HGNC:25484 1.7672705 -13.2877124 0.6875472 2.0777267 1.1668292 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 0.9362674
ENSG00000133110 4.2710413 3.2531658 9.940895 7.967789 0.0046654 0.4049923 ENSG00000133110 POSTN periostin 13 37562583 37598844 protein_coding HGNC:16953 4.6914338 7.7538893 3.9304450 4.1318557 5.8703544 6.1785337 4.7653462 8.2155474 11.5463387 5.5122214 10.1460075 9.2029797 10.1099600 6.0782307
ENSG00000158246 -1.7017771 -1.0907073 5.139862 7.950746 0.0047361 0.4049923 ENSG00000158246 TENT5B terminal nucleotidyltransferase 5B 1 27005020 27012850 protein_coding HGNC:28273 5.3510663 4.1847187 4.8727768 5.6806621 4.8481314 4.0872978 2.3638672 4.0195801 2.1499737 4.1158633 3.4537255 3.8224523 3.1045777 4.9494829
ENSG00000248449 2.8388668 2.3761428 3.152582 7.133017 0.0047572 0.4049923 ENSG00000248449 PCDHGB8P 5 141426286 141429158 transcribed_unitary_pseudogene HGNC:8715 -0.7053563 1.7957404 -13.2877124 -13.2877124 -13.2877124 1.2829836 1.3845201 2.2211176 3.8485579 2.0778224 2.8681445 2.5264382 2.8532635 0.1196762
ENSG00000188451 1.0374416 1.2356963 4.197515 7.939437 0.0047597 0.4049923 ENSG00000188451 SRP72P2 6 158237336 158242797 processed_pseudogene HGNC:31096 2.9893650 3.4026987 3.1283160 3.4281365 2.1998356 3.4755961 4.5018640 3.4397935 3.9246783 4.1692013 4.5066965 4.3477954 4.0207107 3.1630525
ENSG00000133121 -1.5056348 -0.7397357 4.181172 7.937553 0.0048182 0.4053860 ENSG00000133121 STARD13 StAR related lipid transfer domain containing 13 13 33103137 33350630 protein_coding HGNC:19164 1.6705055 2.9268845 3.3806139 5.2064480 2.0594581 3.0898185 3.3331824 2.5339592 0.8391445 2.1183730 1.8122370 1.9734100 2.5573603 3.5608837
ENSG00000046604 -6.3197284 -6.3197284 2.235506 8.618000 0.0048643 0.4053860 ENSG00000046604 DSG2 desmoglein 2 18 31497624 31551351 protein_coding HGNC:3049 -2.7650426 -0.2640706 1.4588513 2.4294727 -0.4684953 0.2223990 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 0.8751368
ENSG00000171453 0.7341627 0.6048101 6.006258 7.869210 0.0049002 0.4053860 ENSG00000171453 POLR1C RNA polymerase I and III subunit C 6 43509702 43562419 protein_coding HGNC:20194 5.2369379 5.4802873 5.2501813 5.7470952 5.5982934 5.6237591 6.2576008 6.1427143 5.7052885 6.3037688 5.8992479 6.1156403 6.0541328 5.5018359
ENSG00000148943 1.1102153 0.5603432 4.704034 7.862810 0.0049634 0.4053860 ENSG00000148943 LIN7C lin-7 homolog C, crumbs cell polarity complex component 11 27494418 27506769 protein_coding HGNC:17789 2.0663834 2.4856048 2.5619774 1.9995747 2.2382262 2.7916686 3.3796716 2.7815030 3.7281054 2.8185602 3.0233592 2.9245908 3.3474647 2.3847635
ENSG00000066468 -3.9014374 0.2090931 3.160214 7.242877 0.0050218 0.4053860 ENSG00000066468 FGFR2 fibroblast growth factor receptor 2 10 121478332 121598458 protein_coding HGNC:3689 1.8089628 -13.2877124 2.5117451 2.9278547 2.0763248 4.5202530 1.0902701 -0.9362900 -13.2877124 0.9444402 2.9927556 2.3051493 -0.1779829 2.8738624
ENSG00000285162 3.5749985 2.5190618 3.183466 6.878830 0.0050333 0.4053860 ENSG00000285162 NA NA NA NA NA NA NA -2.0449610 -13.2877124 -2.1788809 -13.2877124 0.8697782 -13.2877124 1.3212320 -2.2124472 3.5162415 1.7803979 0.5330250 1.2875222 2.2384157 -1.3890743
ENSG00000244556 0.5281789 1.3171170 3.885991 7.804008 0.0050530 0.4053860 ENSG00000244556 ODCP 7 129028889 129030527 processed_pseudogene HGNC:8110 3.0296137 3.5300559 2.5163755 3.7517133 3.2208320 3.4335436 3.5735441 3.5820004 3.7183609 4.4884747 4.5944383 4.5424291 3.6261774 3.2985891
ENSG00000172803 0.1381156 -1.1911167 6.301032 7.792913 0.0050760 0.4053860 ENSG00000172803 SNX32 sorting nexin 32 11 65833834 65856896 protein_coding HGNC:26423 5.7340247 5.6097293 6.2734328 5.6296531 5.6475740 6.0357583 5.8147750 6.1347121 5.3867177 4.9968451 4.0974151 4.6161159 5.8106999 5.8440537
ENSG00000115474 0.8342308 0.0108739 5.358141 7.794137 0.0050962 0.4053860 ENSG00000115474 KCNJ13 potassium inwardly rectifying channel subfamily J member 13 2 232765802 232776565 protein_coding HGNC:6259 4.1592250 4.1228850 4.0397848 4.7184386 3.6374069 5.8820147 5.0243884 4.7640688 5.1189823 4.7196583 4.4276514 4.5810300 4.9768054 4.6388645
ENSG00000185112 1.5173281 2.0956535 3.520375 7.548225 0.0050988 0.4053860 ENSG00000185112 FAM43A family with sequence similarity 43 member A 3 194685883 194689037 protein_coding HGNC:26888 1.1066043 2.0227406 1.5251077 2.3078805 -0.1805427 1.5102125 0.6113849 3.2671224 3.5042962 3.0414494 4.0311897 3.6195803 2.9070454 1.5670143
ENSG00000221883 1.2498346 0.8641513 4.734216 7.784729 0.0051517 0.4053860 ENSG00000221883 ARIH2OS 3 48917765 48918829 lncRNA HGNC:34425 4.5481034 5.0628793 3.6245004 3.9336344 4.5882521 3.8174244 4.4586417 5.3710860 5.8174764 4.8403458 5.0168736 4.9313082 5.3191439 4.3527006
ENSG00000183682 1.2292969 0.8731036 5.790813 7.724302 0.0052640 0.4053860 ENSG00000183682 BMP8A bone morphogenetic protein 8a 1 39491636 39529869 protein_coding HGNC:21650 2.9227364 4.1557932 3.2121008 2.9052554 2.6351078 2.1130924 4.0418250 4.4835633 4.2545725 4.2367871 3.7922472 4.0315720 4.2712624 3.1348851
ENSG00000153130 -1.2469286 -2.3789218 3.299478 7.599784 0.0053585 0.4053860 ENSG00000153130 SCOC short coiled-coil protein 4 140257286 140385728 protein_coding HGNC:20335 3.0977259 2.8454704 2.6650114 2.1785754 3.3175120 5.0648524 -1.2521160 2.1615272 2.5701372 0.8772362 1.1166921 1.0019262 1.8523149 3.5455196
ENSG00000284790 3.8287999 2.8860497 2.106904 7.201823 0.0053611 0.4053860 ENSG00000284790 NA NA NA NA NA NA NA 0.3424273 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 1.2369432 1.9473860 2.5667231 1.6098022 0.4730845 1.1506162 2.0165391 -2.2419664
ENSG00000175895 -3.3484611 0.3048205 2.314421 7.146823 0.0053876 0.4053860 ENSG00000175895 PLEKHF2 pleckstrin homology and FYVE domain containing 2 8 95115642 95156698 protein_coding HGNC:20757 2.1925496 0.7803479 3.0479004 2.6723298 0.8985853 2.4898925 -1.9523276 -13.2877124 -1.8667942 2.1555155 0.3292315 1.5139005 -2.4936190 2.2436143
ENSG00000262096 -3.5329542 -3.8460395 2.082405 7.145995 0.0053893 0.4053860 ENSG00000262096 PCDHB19P 5 141239923 141242293 transcribed_unprocessed_pseudogene HGNC:14549 2.4230946 0.5102196 1.6073497 1.4716380 -13.2877124 3.0073864 -1.6281891 -1.5574503 -13.2877124 -13.2877124 -1.3457368 -2.3453702 -2.1771312 1.7830316
ENSG00000178358 1.3780505 2.4759988 2.419397 6.795007 0.0054375 0.4053860 ENSG00000178358 OR2D3 olfactory receptor family 2 subfamily D member 3 11 6921002 6921994 protein_coding HGNC:15146 2.5834483 1.4976956 1.8352559 1.2176489 -13.2877124 -13.2877124 3.3470672 2.6374853 2.1705039 4.1164414 3.9557888 4.0383501 2.8004717 1.2939431
ENSG00000144401 1.0193728 0.3944910 6.947270 7.640398 0.0054618 0.4053860 ENSG00000144401 METTL21A methyltransferase 21A, HSPA lysine 2 207580631 207625928 protein_coding HGNC:30476 5.8212295 6.2424737 5.1690782 5.8371750 5.2175892 4.4259263 6.4844877 5.9500667 5.7980140 5.7061886 5.6647681 5.6856271 6.1085458 5.5653282
ENSG00000101265 -2.2423424 -0.2094679 3.047122 7.387035 0.0054808 0.4053860 ENSG00000101265 RASSF2 Ras association domain family member 2 20 4780023 4823608 protein_coding HGNC:9883 0.6400360 1.7891625 1.1506260 0.5446832 1.4535392 1.9220951 -2.8810715 -0.2559802 -1.1879569 1.4981150 0.5924135 1.1152001 -1.0871377 1.3431077
ENSG00000118600 1.5413812 1.1049002 4.880654 7.651656 0.0054911 0.4053860 ENSG00000118600 RXYLT1 ribitol xylosyltransferase 1 12 63779833 63809792 protein_coding HGNC:13530 2.7227462 2.9973753 2.5959321 1.1592242 3.2339112 3.4762314 4.0592911 4.0352886 4.2218257 4.0805074 3.4319664 3.7923768 4.1078771 2.8547571
ENSG00000218732 3.0609213 1.7533739 2.510475 6.671324 0.0055211 0.4053860 ENSG00000218732 6 72316599 72317436 processed_pseudogene -13.2877124 -13.2877124 1.3321895 -13.2877124 2.3780746 3.8982239 4.8981977 3.6425435 4.5114000 3.9446667 1.5440694 3.1948838 4.4399630 1.9149938
ENSG00000185630 -1.4743726 -1.5160940 6.331266 7.585531 0.0056121 0.4053860 ENSG00000185630 PBX1 PBX homeobox 1 1 164555584 164899296 protein_coding HGNC:8632 5.6124866 3.5386335 3.9284695 5.3620426 6.2720125 6.6520641 4.9590238 5.2191026 4.4343215 4.7881001 3.6928674 4.3420114 4.9064515 5.6183814
ENSG00000111452 2.1403109 2.4657657 3.511958 7.173266 0.0056485 0.4053860 ENSG00000111452 ADGRD1 adhesion G protein-coupled receptor D1 12 130953907 131141469 protein_coding HGNC:19893 0.7478961 0.9411011 -13.2877124 -13.2877124 0.2004466 3.3792259 2.4759448 3.6525346 4.2978747 3.5233069 3.9829850 3.7713771 3.6556589 1.3366393
ENSG00000184985 1.7165377 0.7121859 3.804090 7.514345 0.0056486 0.4053860 ENSG00000184985 SORCS2 sortilin related VPS10 domain containing receptor 2 4 7192538 7742827 protein_coding HGNC:16698 3.6084307 1.3516736 0.6824582 1.1203699 -0.2627978 3.2931572 1.8412735 2.5251215 3.1423309 1.7110794 3.0846960 2.5555426 2.5984426 2.2811442
ENSG00000175426 1.7899393 1.4210820 5.596958 7.564787 0.0057093 0.4053860 ENSG00000175426 PCSK1 proprotein convertase subtilisin/kexin type 1 5 96390333 96434143 protein_coding HGNC:8743 3.5812825 3.4980450 1.4720120 1.5874274 1.9367691 2.3797923 4.7604208 3.2766345 4.6888407 4.6529761 3.2995392 4.1294704 4.3828167 2.6660037
ENSG00000120942 0.9935636 2.2290858 2.624019 6.886586 0.0057153 0.4053860 ENSG00000120942 UBIAD1 UbiA prenyltransferase domain containing 1 1 11273198 11296049 protein_coding HGNC:30791 -2.0803197 0.6430601 -1.2476385 0.7020520 0.2166883 0.3226423 -1.3119862 1.6659926 0.7732225 1.7962572 2.4927851 2.1861544 0.8169871 0.0609093
ENSG00000182957 -2.9185364 -0.7419427 2.472324 6.897666 0.0057332 0.4053860 ENSG00000182957 SPATA13 spermatogenesis associated 13 13 23979805 24307074 protein_coding HGNC:23222 -0.3586260 1.3195168 1.8829893 1.9691475 -2.3678807 2.0991299 -2.0192172 -3.5156453 -2.0877395 2.9936026 -0.0662204 2.1570020 -2.3975089 1.3559302
ENSG00000111912 1.6510839 1.2162259 3.584439 7.391568 0.0058023 0.4053860 ENSG00000111912 NCOA7 nuclear receptor coactivator 7 6 125781161 125932034 protein_coding HGNC:21081 1.0341262 3.9883405 1.1650720 3.9729572 0.8463056 1.2152592 3.2262169 2.8612930 5.3571864 1.8797908 3.2413027 2.7155301 4.2633946 2.7363929
ENSG00000111331 -2.5530446 -1.2325531 2.162257 6.764061 0.0058116 0.4053860 ENSG00000111331 OAS3 2’-5’-oligoadenylate synthetase 3 12 112938051 112976460 protein_coding HGNC:8088 2.8414563 0.4765714 0.4295645 1.0144131 -1.1053429 2.5507369 -0.1020580 -3.1454266 0.6821804 -1.1094179 -1.3524884 -1.2258400 -0.1793622 1.6048542
ENSG00000125740 -1.0783412 -1.4515129 5.841742 7.499084 0.0058594 0.4053860 ENSG00000125740 FOSB FosB proto-oncogene, AP-1 transcription factor subunit 19 45467995 45475179 protein_coding HGNC:3797 3.6373032 5.6375586 5.7361346 6.3196658 4.9314770 4.6254243 3.6159749 4.8608635 4.2092212 3.5329859 4.1012042 3.8448908 4.3174915 5.3842864
ENSG00000105849 -1.9961020 -1.2009931 3.038318 7.330479 0.0058991 0.4053860 ENSG00000105849 POLR1F RNA polymerase I subunit F 7 19695461 19709037 protein_coding HGNC:18027 0.6246044 2.4342127 1.7375289 2.8220163 1.2846024 2.2206206 0.1709365 -1.3423161 -0.0066198 0.5019079 3.2826954 2.4786883 -0.2540610 2.0267826
ENSG00000186522 -0.4928755 -1.4157275 4.569571 7.500510 0.0059105 0.4053860 ENSG00000186522 SEPTIN10 septin 10 2 109542799 109614143 protein_coding HGNC:14349 5.2428521 5.1330743 4.0708786 4.1897053 3.4130363 4.4904329 4.7823637 2.5075039 3.3199830 2.5480926 3.5586826 3.1401237 3.8477306 4.5560470
ENSG00000140548 -1.3548484 -1.1645055 7.634300 7.467086 0.0059417 0.4053860 ENSG00000140548 ZNF710 zinc finger protein 710 15 90001324 90082206 protein_coding HGNC:25352 6.8297883 6.8849360 7.6807861 7.1107775 8.1427520 7.0786178 6.0515697 5.9617759 4.0756262 6.7089333 5.3576378 6.1860302 5.6000791 7.3708897
ENSG00000170430 -1.7420875 -1.3090112 3.236447 7.413108 0.0059430 0.4053860 ENSG00000170430 MGMT O-6-methylguanine-DNA methyltransferase 10 129467190 129770983 protein_coding HGNC:7059 4.0755393 3.1830084 4.0425580 4.2187946 3.6822075 4.7878952 1.7590548 2.8389469 1.5343684 1.0671782 3.0015331 2.3368315 2.1631074 4.0804140
ENSG00000162877 3.5799509 2.6258635 2.973638 6.555912 0.0059843 0.4053860 ENSG00000162877 PM20D1 peptidase M20 domain containing 1 1 205828025 205850132 protein_coding HGNC:26518 2.8119496 0.3033295 -13.2877124 -13.2877124 -13.2877124 -13.2877124 2.8915506 0.2252009 4.9886434 3.4849669 -13.2877124 2.4849798 3.7491305 0.4606063
ENSG00000139193 0.8635472 2.3096145 2.351533 6.646382 0.0060067 0.4053860 ENSG00000139193 CD27 CD27 molecule 12 6444955 6451718 protein_coding HGNC:11922 2.0443913 1.9585153 1.0014492 -13.2877124 0.3434374 2.5700633 2.1535612 1.4153552 2.2396935 4.3298638 3.1251622 3.8497671 1.9805697 1.5211221
ENSG00000205918 0.8538122 -0.1216283 8.279062 7.442097 0.0060147 0.4053860 ENSG00000205918 PDPK2P 16 2616453 2642432 transcribed_unprocessed_pseudogene HGNC:49897 6.4611520 7.9056287 7.4486803 7.7688789 7.2827880 7.0745527 8.1777132 7.9198381 8.1394210 7.2635792 7.2022532 7.2332419 8.0833852 7.3968890
ENSG00000167244 4.1875356 4.2963522 4.285453 6.672381 0.0060191 0.4053860 ENSG00000167244 IGF2 insulin like growth factor 2 11 2129112 2158391 protein_coding HGNC:5466 1.0439128 -13.2877124 -13.2877124 -1.2186722 -2.1175620 -0.0120549 -2.6457781 4.9589107 -13.2877124 -0.9527464 4.5887205 3.6193687 3.3813459 -0.6920644
ENSG00000228960 2.5947589 1.9886413 8.049919 7.439802 0.0060244 0.4053860 ENSG00000228960 OR2A9P 7 144299373 144300305 transcribed_unprocessed_pseudogene HGNC:8236 7.3272730 7.7973193 3.0538502 2.2668024 7.7929754 6.2264390 8.9190344 9.4555410 8.7636811 8.1164535 8.9350698 8.5830617 9.0775304 6.8513593
ENSG00000140105 0.8557682 0.5385314 6.670873 7.434002 0.0060434 0.4053860 ENSG00000140105 WARS1 tryptophanyl-tRNA synthetase 1 14 100333790 100376805 protein_coding HGNC:12729 5.2853687 6.5380137 6.2606059 6.4467690 5.3980516 5.9299526 6.0216374 6.8806470 7.0492464 5.6030795 7.1507430 6.5751960 6.7153840 6.0551423
ENSG00000274829 -3.5048227 -1.0164238 2.873842 6.855036 0.0061033 0.4072484 ENSG00000274829 PARN poly(A)-specific ribonuclease HSCHR16_1_CTG1 8558 205584 protein_coding HGNC:8609 2.7800875 3.9153130 4.9033657 6.3298136 4.6652523 -13.2877124 0.6102200 -13.2877124 -13.2877124 3.2350372 2.1336243 2.7869812 -0.9745536 4.7160365
ENSG00000197381 0.7182869 1.3480279 4.708062 7.403760 0.0061995 0.4115011 ENSG00000197381 ADARB1 adenosine deaminase RNA specific B1 21 45073853 45226560 protein_coding HGNC:226 2.4104857 3.9353023 2.8425006 2.3077540 2.4229439 2.8255952 2.6824791 2.5416308 3.0049538 3.8099237 4.3528586 4.1067824 2.7562808 2.9129790
ENSG00000162599 1.6206337 1.0139578 3.987170 7.295361 0.0063925 0.4221070 ENSG00000162599 NFIA nuclear factor I A 1 60865259 61462788 protein_coding HGNC:7784 -0.0856819 3.8526025 0.7375172 3.7441795 2.7552818 1.9533543 3.2053866 2.2859928 2.9241837 3.1595376 3.5149063 3.3481364 2.8540886 2.7754172
ENSG00000188152 1.0358234 1.1018461 5.334618 7.309841 0.0064658 0.4245143 ENSG00000188152 NUTM2G NUT family member 2G 9 96928310 96940253 protein_coding HGNC:23449 4.5190872 4.2710766 3.3673293 3.5421245 3.1892670 3.0791224 4.4795409 4.8754454 4.8501382 4.9678897 4.8386605 4.9047216 4.7460397 3.7686639
ENSG00000176928 -3.7084098 1.3637872 2.307811 6.971119 0.0064960 0.4245143 ENSG00000176928 GCNT4 glucosaminyl (N-acetyl) transferase 4 5 75025346 75052558 protein_coding HGNC:17973 -13.2877124 -2.8096709 1.5291968 0.0531934 -0.1080676 0.9754446 -2.9572212 -13.2877124 -13.2877124 0.4724888 1.7149690 1.2235452 -4.5399447 0.2142523
ENSG00000162585 0.8028578 0.5415466 7.379363 7.267964 0.0065576 0.4256915 ENSG00000162585 FAAP20 FA core complex associated protein 20 1 2184461 2212720 protein_coding HGNC:26428 6.2563806 6.9619166 6.8800312 7.5149372 7.0369899 7.1231445 7.0072898 7.1770548 7.4949569 7.3640358 7.2276417 7.2974501 7.2407894 7.0084880
ENSG00000171720 -1.3628714 -2.1669777 3.227832 7.195552 0.0065811 0.4256915 ENSG00000171720 HDAC3 histone deacetylase 3 5 141620876 141636849 protein_coding HGNC:4854 3.5262597 3.7667446 4.6682561 3.6053975 3.9412570 3.1524478 2.5874639 1.6259867 2.6014555 1.6235579 -0.0083485 1.0270018 2.3377996 3.8577117
ENSG00000133026 0.7400233 0.2797858 7.558331 7.239989 0.0066493 0.4265028 ENSG00000133026 MYH10 myosin heavy chain 10 17 8474207 8631376 protein_coding HGNC:7568 5.5827110 4.9833371 5.4264651 5.2539714 6.5520555 4.7887412 5.1295964 5.9738931 6.2091596 5.0370949 6.1608898 5.7057562 5.8400001 5.5556082
ENSG00000168298 -1.0179432 -1.3551826 5.573701 7.235733 0.0066799 0.4265028 ENSG00000168298 H1-4 H1.4 linker histone, cluster member 6 26156329 26157115 protein_coding HGNC:4718 7.5191698 6.6812810 7.5073302 7.7694579 7.1948763 7.8847182 7.1135230 5.5937803 5.4785707 6.0483337 6.0609441 6.0546527 6.2690384 7.4771572
ENSG00000184640 -1.0835158 -0.5495722 7.431360 7.207340 0.0067584 0.4265028 ENSG00000184640 SEPTIN9 septin 9 17 77280569 77500596 protein_coding HGNC:7323 5.8616887 6.7274947 6.8498020 7.3088644 6.1799707 7.1201540 5.8215316 6.6204704 5.0851365 5.9620075 5.8676343 5.9155924 5.9764425 6.7585340
ENSG00000226430 2.9359569 2.4459895 2.842761 6.397416 0.0067862 0.4265028 ENSG00000226430 USP17L7 ubiquitin specific peptidase 17 like family member 7 8 12132417 12134099 protein_coding HGNC:37180 -13.2877124 0.9706534 -13.2877124 1.3919772 1.4795617 -13.2877124 4.0925996 2.1390991 1.8888851 3.5438335 -0.0836334 2.6560854 3.0686132 0.2972983
ENSG00000145242 6.0688495 8.7438088 3.254913 8.872320 0.0068144 0.4265028 ENSG00000145242 EPHA5 EPH receptor A5 4 65319563 65670495 protein_coding HGNC:3389 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -2.8502620 -1.1615435 1.5718918 -13.2877124 4.1410524 3.1410606 0.2463667 -13.2877124
ENSG00000183715 2.2878345 -5.0190078 2.703412 6.728700 0.0069242 0.4265028 ENSG00000183715 OPCML opioid binding protein/cell adhesion molecule like 11 132414977 133532501 protein_coding HGNC:8143 -3.0319048 3.1808391 -13.2877124 -13.2877124 2.7313066 0.4130492 1.3140607 -1.4795687 4.6681413 -13.2877124 -13.2877124 -13.2877124 3.2362063 1.5162568
ENSG00000122257 -1.0899131 -0.8651591 4.215899 7.178444 0.0069655 0.4265028 ENSG00000122257 RBBP6 RB binding protein 6, ubiquitin ligase 16 24537693 24572863 protein_coding HGNC:9889 1.9986512 3.5626047 3.5464109 2.7905615 3.1484656 3.5305808 0.7236442 2.2043508 3.3240920 0.7394187 3.4657498 2.6687752 2.4396258 3.1921287
ENSG00000170558 1.3457711 0.7246324 6.729755 7.148093 0.0069681 0.4265028 ENSG00000170558 CDH2 cadherin 2 18 27932879 28177946 protein_coding HGNC:1759 4.9587987 4.8754114 3.8112640 4.2881904 4.6055832 4.8728380 5.4383900 5.1327771 6.4996771 4.4918282 5.8653733 5.3362398 5.8153807 4.6212994
ENSG00000165028 -1.8601622 1.3067816 2.420700 6.449505 0.0069993 0.4265028 ENSG00000165028 NIPSNAP3B nipsnap homolog 3B 9 104764129 104777764 protein_coding HGNC:23641 -0.4034522 -0.0012716 -1.3077299 -0.5297828 -0.1061548 1.4851733 -1.9558717 -1.2993330 -13.2877124 1.6759749 0.4945487 1.2029605 -2.1753185 0.1332018
ENSG00000159261 5.1354703 5.0366918 2.265323 8.044178 0.0071117 0.4265028 ENSG00000159261 CLDN14 claudin 14 21 36460621 36576569 protein_coding HGNC:2035 -13.2877124 -13.2877124 -13.2877124 0.2829403 -13.2877124 -13.2877124 0.4982723 1.7210366 3.7367515 2.4107302 3.1157536 2.8058870 2.5882136 -2.3014294
ENSG00000106366 1.5094843 0.4822335 8.712346 7.100275 0.0071309 0.4265028 ENSG00000106366 SERPINE1 serpin family E member 1 7 101127104 101139247 protein_coding HGNC:8583 7.7849475 7.0049538 6.4210866 6.5848604 6.6257565 6.6715816 9.0001549 6.6263152 8.4243027 7.3694570 7.4501266 7.4103555 8.3134558 6.9294892
ENSG00000125991 -0.8501681 -0.4164521 6.015605 7.101270 0.0071356 0.4265028 ENSG00000125991 ERGIC3 ERGIC and golgi 3 20 35542038 35557634 protein_coding HGNC:15927 6.2273937 6.9763335 6.6375751 6.9739478 6.6493815 6.4804873 5.3255096 6.1340790 5.6219913 6.1147063 6.1266689 6.1206999 5.7331775 6.6813454
ENSG00000095303 1.8251682 0.2835348 4.427071 7.107149 0.0071617 0.4265028 ENSG00000095303 PTGS1 prostaglandin-endoperoxide synthase 1 9 122370530 122395703 protein_coding HGNC:9604 2.5962148 2.5982732 2.5656661 2.9553666 1.3233637 2.6313732 4.3835571 3.0392404 4.7538653 2.4739996 2.0033932 2.2578009 4.2243060 2.5226338
ENSG00000178752 1.5354165 1.2211331 5.041416 7.107543 0.0071763 0.4265028 ENSG00000178752 ERFE erythroferrone 2 238158970 238168900 protein_coding HGNC:26727 3.0442093 4.1643251 3.7754775 4.9554533 3.6390153 6.0965999 5.0360144 4.8139351 6.4485176 4.2059633 5.9097725 5.2960036 5.6271562 4.6609748
ENSG00000006016 1.4510812 0.0839045 6.861955 7.086823 0.0071847 0.4265028 ENSG00000006016 CRLF1 cytokine receptor like factor 1 19 18572220 18607741 protein_coding HGNC:2364 8.5199620 6.9315489 7.1976716 7.3908015 7.1088812 6.3543411 8.4551970 7.2990018 10.5453616 7.2845551 7.6901307 7.5015482 9.3828812 7.4145068
ENSG00000204381 -1.4500560 -1.1331944 5.733347 7.084033 0.0072055 0.4265028 ENSG00000204381 LAYN layilin 11 111540280 111561745 protein_coding HGNC:29471 5.6336318 5.8676210 5.5926061 5.9625848 6.5216382 6.6817549 4.0212806 5.4345579 2.9656022 4.9394198 4.5565586 4.7606526 4.4875114 6.1057041
ENSG00000006015 2.5210300 -0.3117054 6.270047 7.087173 0.0072117 0.4265028 ENSG00000006015 REX1BD required for excision 1-B domain containing 19 18588685 18592337 protein_coding HGNC:26098 6.2889878 5.3832104 6.2670900 6.2790915 3.9463241 4.0092842 5.6507698 5.6538646 8.3417895 4.1910150 5.9917706 5.3558099 7.1464384 5.6730122
ENSG00000102226 -1.1473185 -0.5315773 4.647717 7.092162 0.0072313 0.4265028 ENSG00000102226 USP11 ubiquitin specific peptidase 11 X 47232866 47248328 protein_coding HGNC:12609 3.7576051 3.6476059 4.7943506 5.1981090 3.2737195 4.2865618 2.3491756 4.2797031 2.0781733 3.8140913 2.8336999 3.4056197 3.2600845 4.3183647
ENSG00000134283 0.8999047 1.9309307 5.845172 7.067166 0.0072850 0.4265028 ENSG00000134283 PPHLN1 periphilin 1 12 42238447 42459715 protein_coding HGNC:19369 5.7916098 5.6664856 4.8011242 3.5669292 6.2813763 4.2583186 5.2871388 5.3899414 6.7133206 6.1328104 7.6849287 7.1082476 5.9535025 5.3388576
ENSG00000152661 -0.3688700 1.2704411 6.312498 7.038561 0.0073658 0.4265028 ENSG00000152661 GJA1 gap junction protein alpha 1 6 121435595 121449727 protein_coding HGNC:4274 4.1366146 6.1380310 4.8982412 4.6295797 4.7279230 4.7558616 3.5052888 4.9166989 4.6509448 5.6738252 6.6504089 6.2432191 4.4742855 5.0305400
ENSG00000120594 3.1160202 3.8634548 3.245209 6.237388 0.0073783 0.4265028 ENSG00000120594 PLXDC2 plexin domain containing 2 10 19816239 20289856 protein_coding HGNC:21013 1.5506485 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -3.1406856 -0.8376224 3.4601989 2.3699656 2.9101557 2.6651973 1.9608580 -1.0340678
ENSG00000165323 1.3129057 -5.4525261 2.487055 6.827026 0.0073869 0.4265028 ENSG00000165323 FAT3 FAT atypical cadherin 3 11 92224818 92896473 protein_coding HGNC:23112 2.3382960 -0.7058080 -13.2877124 -1.0619326 -4.2558596 -3.1256106 -1.0594799 -1.3656595 0.8554763 -13.2877124 -13.2877124 -13.2877124 -0.1642279 0.0740848
ENSG00000232070 2.5598275 3.1393825 2.169020 6.255677 0.0073892 0.4265028 ENSG00000232070 TMEM253 transmembrane protein 253 14 21098811 21103724 protein_coding HGNC:32545 0.7260421 0.6407903 -13.2877124 2.8667618 -13.2877124 -13.2877124 1.4882240 3.4633121 2.1619289 3.8376479 3.1032621 3.5166878 2.6096122 0.8084312
ENSG00000138650 -3.7846014 -2.8550648 2.660374 6.404536 0.0074078 0.4265028 ENSG00000138650 PCDH10 protocadherin 10 4 133149294 133208606 protein_coding HGNC:13404 1.3880611 -13.2877124 2.0219945 1.9350508 -0.2638905 0.9720235 -13.2877124 -13.2877124 -1.9283417 -13.2877124 -0.3811412 -1.3809533 -3.5122063 1.1480839
ENSG00000112139 1.5300900 0.3999563 3.433052 6.915832 0.0074347 0.4265028 ENSG00000112139 MDGA1 MAM domain containing glycosylphosphatidylinositol anchor 1 6 37630679 37699306 protein_coding HGNC:19267 0.5625497 -0.3222365 0.1813545 1.9242732 -0.1054003 1.5060885 1.6905369 5.2288702 1.1560898 0.7534437 -0.8412002 0.1660662 3.8398801 0.8713240
ENSG00000137337 -6.9230830 -0.2968394 2.952523 7.435849 0.0075426 0.4296542 ENSG00000137337 MDC1 mediator of DNA damage checkpoint 1 6 30699807 30717447 protein_coding HGNC:21163 1.5742299 2.0171843 0.9326886 -13.2877124 -13.2877124 0.9363918 -13.2877124 -13.2877124 -13.2877124 0.7706143 0.5717448 0.6746035 -13.2877124 0.8544561
ENSG00000274587 -3.0189163 0.5678190 2.786919 6.439688 0.0075574 0.4296542 ENSG00000274587 LILRB3 leukocyte immunoglobulin like receptor B3 HSCHR19_4_CTG3_1 191638 198073 protein_coding HGNC:6607 3.3065449 4.4163330 -0.2613031 1.8615259 4.6858800 3.7896256 2.2391304 -13.2877124 2.4942986 3.7618001 4.4420218 4.1416351 1.7873999 3.6492825
ENSG00000026025 -1.1297256 -1.3756436 12.516238 6.961379 0.0076501 0.4297146 ENSG00000026025 VIM vimentin 10 17228241 17237593 protein_coding HGNC:12692 12.2291330 12.2287952 13.2074809 13.7995626 12.2720874 12.5744841 11.9997199 11.6833494 10.4596181 11.7011385 11.0830564 11.4249473 11.5170454 12.8521550
ENSG00000280787 -5.7172955 1.3036283 2.506583 7.031979 0.0077324 0.4297146 ENSG00000280787 HERC2P2 HSCHR15_3_CTG3 139181 224046 transcribed_unprocessed_pseudogene HGNC:4870 1.1318397 -13.2877124 -0.5080566 1.1368699 -13.2877124 1.4542654 -13.2877124 -13.2877124 -13.2877124 1.6900076 2.5266911 2.1681719 -13.2877124 0.3847782
ENSG00000102743 1.5253721 1.0159650 3.446000 6.818759 0.0077356 0.4297146 ENSG00000102743 SLC25A15 solute carrier family 25 member 15 13 40789412 40812460 protein_coding HGNC:10985 0.6535746 2.0139746 0.8490225 0.0438764 2.9759458 1.8345709 3.1571644 4.0631357 3.5593007 2.8184293 2.5576895 2.6939419 3.6409651 1.7281765
ENSG00000088538 1.1576220 0.0741137 4.214153 6.956118 0.0077524 0.4297146 ENSG00000088538 DOCK3 dedicator of cytokinesis 3 3 50674927 51384198 protein_coding HGNC:2989 1.3946722 0.7016378 1.2269000 0.5380057 0.7408352 0.7473324 2.3285668 1.6636680 1.9460919 1.4595874 0.3941695 1.0230715 2.0053479 0.9257549
ENSG00000204176 1.5370010 2.1312308 5.779967 6.940318 0.0077850 0.4297146 ENSG00000204176 SYT15 synaptotagmin 15 10 46578217 46594173 protein_coding HGNC:17167 4.4213444 2.9687497 1.5387264 4.4117573 3.2310233 1.7038834 1.3300736 4.6438890 5.8073863 3.9808410 6.6747113 5.8820399 4.7990173 3.4614578
ENSG00000232804 1.8094490 -6.9208076 4.038745 7.111525 0.0078276 0.4297146 ENSG00000232804 HSPA1B heat shock protein family A (Hsp70) member 1B HSCHR6_MHC_APD_CTG1 3160360 3162874 protein_coding HGNC:5233 -13.2877124 -13.2877124 4.0643262 3.9876457 -13.2877124 3.1088101 3.7988398 5.1229264 4.2061499 -13.2877124 -13.2877124 -13.2877124 4.4858867 2.7803145
ENSG00000184349 -5.8376322 -5.8376322 1.903462 7.280288 0.0078355 0.4297146 ENSG00000184349 EFNA5 ephrin A5 5 107376894 107670937 protein_coding HGNC:3225 -13.2877124 1.7727974 3.4191136 1.2340978 1.4278502 0.8563898 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 1.8051137
ENSG00000168077 1.2153284 -0.0786396 6.645360 6.908020 0.0078681 0.4297146 ENSG00000168077 SCARA3 scavenger receptor class A member 3 8 27633868 27676776 protein_coding HGNC:19000 4.6229395 4.3765041 5.0751678 5.5006291 4.5837596 4.6210150 6.3497622 4.5580906 6.2131651 5.2089651 4.0186700 4.7332426 5.9013190 4.8495370
ENSG00000276068 1.0994517 0.7453094 6.894284 6.888715 0.0079442 0.4297146 ENSG00000276068 NAIP NLR family apoptosis inhibitory protein HSCHR5_1_CTG1_1 516878 573494 protein_coding HGNC:7634 4.4581066 4.6942930 4.6359366 4.2502647 3.3339197 3.9676921 4.4675501 5.8417520 5.1507333 4.9632512 5.0863200 5.0260976 5.2605229 4.2914606
ENSG00000248769 -2.6133438 -6.4230709 2.337213 6.539563 0.0079845 0.4297146 ENSG00000248769 5 69653248 69654334 unprocessed_pseudogene 4.2113713 4.0095048 3.1960178 1.7113460 3.6150424 -13.2877124 -13.2877124 2.2831860 -13.2877124 -13.2877124 -13.2877124 -13.2877124 0.6982825 3.3055379
ENSG00000278839 -3.6659388 -0.3425032 2.148773 6.555619 0.0080072 0.4297146 ENSG00000278839 SERF1B small EDRK-rich factor 1A HSCHR5_2_CTG1_1 492256 510143 protein_coding HGNC:10756 4.1278113 4.3821706 3.0488315 2.5677365 3.6457702 4.2909249 -13.2877124 -13.2877124 -0.5820908 3.0700765 3.7466132 3.4476436 -2.1666212 3.8181443
ENSG00000196843 -1.7075895 -1.7696459 2.997252 6.747973 0.0080483 0.4297146 ENSG00000196843 ARID5A AT-rich interaction domain 5A 2 96536743 96552638 protein_coding HGNC:17361 3.0625148 2.2890341 3.2133255 3.2999056 1.7201138 2.8416093 1.4122244 -0.4212390 0.1787771 0.9380253 1.1127622 1.0280379 0.5977867 2.8355116
ENSG00000196611 -4.2092645 -1.2505617 3.073717 6.402907 0.0080950 0.4297146 ENSG00000196611 MMP1 matrix metallopeptidase 1 11 102789401 102798160 protein_coding HGNC:7155 4.6635526 3.8688952 2.0647311 1.6980384 1.2066463 -13.2877124 -1.3239096 -0.2537354 -13.2877124 -0.2162014 2.8657880 2.0268298 -1.2766330 3.0499219
ENSG00000100890 -1.2852944 -1.5760294 3.535559 6.867049 0.0080994 0.4297146 ENSG00000100890 PRORP protein only RNase P catalytic subunit 14 35121846 35277622 protein_coding HGNC:19958 4.2765649 3.4232419 3.9731890 3.3428173 4.7637235 4.8451790 3.1797333 3.0368170 1.2722090 2.1186322 2.2439597 2.1826564 2.7139518 4.2207084
ENSG00000141448 2.2595272 1.9728584 3.345818 6.493790 0.0081182 0.4297146 ENSG00000141448 GATA6 GATA binding protein 6 18 22169589 22202528 protein_coding HGNC:4174 1.7530615 1.7533829 -0.7357807 -13.2877124 -0.8561390 -13.2877124 1.7847561 1.7737462 3.4019077 1.8933447 2.7036268 2.3546397 2.5389553 0.3960378
ENSG00000004059 -1.0613968 -0.3278007 5.112347 6.836693 0.0081945 0.4297146 ENSG00000004059 ARF5 ADP ribosylation factor 5 7 127588386 127591700 protein_coding HGNC:658 5.9995508 6.3404334 5.7271510 6.8018590 6.1751679 6.1188511 4.8567331 5.4545045 4.5036015 5.9060071 5.6738497 5.7945931 4.9926008 6.2330333
ENSG00000134697 -1.0897969 -1.2488784 3.783674 6.845893 0.0082577 0.4297146 ENSG00000134697 GNL2 G protein nucleolar 2 1 37566816 37595937 protein_coding HGNC:29925 3.7475118 4.4633435 4.3171119 3.8202301 3.1639271 3.6068515 1.8389421 4.6788015 2.1719856 1.6639575 5.2242487 4.3416385 3.4895802 3.9180026
ENSG00000118596 -1.4865194 -0.7578093 4.384714 6.835321 0.0082660 0.4297146 ENSG00000118596 SLC16A7 solute carrier family 16 member 7 12 59596029 59789855 protein_coding HGNC:10928 3.6042107 2.2946846 2.0901488 1.8022768 2.9654605 4.0031194 2.1713148 1.8912177 -0.4104282 2.6962431 3.0701257 2.8952623 1.5795374 3.0196617
ENSG00000075945 -0.2953874 -2.2605063 2.822423 6.605228 0.0082838 0.4297146 ENSG00000075945 KIFAP3 kinesin associated protein 3 1 169921326 170085208 protein_coding HGNC:17060 1.7050078 1.8266534 2.1709195 2.2914155 2.6384826 1.7866566 1.6105158 1.4114723 1.4259029 -0.8729875 0.0183023 -0.3595808 1.4855165 2.1089600
ENSG00000137571 2.7218199 1.3123445 4.370948 6.728323 0.0083510 0.4297146 ENSG00000137571 SLCO5A1 solute carrier organic anion transporter family member 5A1 8 69667046 69834978 protein_coding HGNC:19046 0.6370398 0.3734689 -13.2877124 -13.2877124 0.6541541 0.9528151 3.3077125 2.3452842 2.0482006 2.3349009 -13.2877124 1.3349292 2.6720068 0.0840956
ENSG00000166979 -3.0865057 -0.6921047 2.597265 6.277644 0.0083555 0.4297146 ENSG00000166979 EVA1C eva-1 homolog C 21 32412006 32515397 protein_coding HGNC:13239 3.8107568 0.0241452 5.0346228 3.4722298 3.3141818 3.8594475 0.9873784 -0.6382631 -13.2877124 1.8348443 2.9737082 2.5138515 -0.1925544 3.7967775
ENSG00000080298 -4.0495830 0.3214288 2.244722 6.636071 0.0083570 0.4297146 ENSG00000080298 RFX3 regulatory factor X3 9 3218297 3526004 protein_coding HGNC:9984 -0.3231206 2.4631453 -0.4908879 -1.2990064 -1.4609415 2.3243628 -13.2877124 -13.2877124 -3.6365889 -1.2924222 3.7503192 2.7934367 -5.2179673 1.0934709
ENSG00000183770 -4.0509378 -1.2202556 2.613313 6.454229 0.0083939 0.4297146 ENSG00000183770 FOXL2 forkhead box L2 3 138944224 138947137 protein_coding HGNC:1092 1.9723250 1.8886692 0.1052570 -13.2877124 2.3768449 3.5822974 -1.9594302 -1.8883490 -13.2877124 -0.2664825 1.3220585 0.7362022 -2.5081407 2.1085004
ENSG00000124785 -2.1437235 -2.0273713 5.637982 6.786870 0.0084011 0.4297146 ENSG00000124785 NRN1 neuritin 1 6 5997999 6007605 protein_coding HGNC:17972 3.1905736 6.6449925 7.2378266 7.2981275 5.0737074 5.5945300 3.1177482 4.9645718 2.7923577 3.9122379 4.4783131 4.2228633 3.9644504 6.3794560
ENSG00000159200 1.3916113 1.1483917 4.753124 6.796569 0.0084058 0.4297146 ENSG00000159200 RCAN1 regulator of calcineurin 1 21 34513142 34615113 protein_coding HGNC:3040 2.7484567 3.3762252 3.7428261 4.1731254 2.6836340 3.6166260 5.2350902 2.8986758 4.5755076 4.0982412 4.6779384 4.4170126 4.5228090 3.4859008
ENSG00000232859 -1.0219039 2.0298841 2.121655 5.914388 0.0085147 0.4311871 ENSG00000232859 LYRM9 LYR motif containing 9 17 27878314 27894752 protein_coding HGNC:27314 -0.8252357 1.6750585 -13.2877124 2.7034644 0.0272447 3.4049067 0.5260227 2.5931185 -13.2877124 4.2384652 3.8049179 4.0379164 1.3169318 1.8667462
ENSG00000173992 -1.1717090 -1.2815638 3.940267 6.783377 0.0085256 0.4311871 ENSG00000173992 CCS copper chaperone for superoxide dismutase 11 66593153 66606019 protein_coding HGNC:1613 4.5006228 4.2123988 5.4826471 5.6172938 4.8895913 5.3879755 3.6762055 3.7016969 3.7626643 4.1943359 3.6895621 3.9639133 3.7139795 5.1049853
ENSG00000228299 7.9673835 6.4707930 3.093787 8.260000 0.0085367 0.4311871 ENSG00000228299 HLA-C major histocompatibility complex, class I, C HSCHR6_MHC_DBB_CTG1 2526549 2529920 protein_coding HGNC:4933 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 1.3659187 3.9110389 5.5684673 4.7066754 -13.2877124 3.7066808 4.4390672 -13.2877124
ENSG00000274744 2.7418128 2.5370733 2.131324 6.011494 0.0085721 0.4312593 ENSG00000274744 NA NA NA NA NA NA NA -13.2877124 -0.0794780 -13.2877124 0.8708949 -1.2641347 1.9257917 1.9440038 2.4002218 2.5883229 1.1891800 2.8955254 2.2811611 2.3353838 0.2205776
ENSG00000223620 -1.6952726 -5.5516343 3.572557 6.681333 0.0086387 0.4328896 ENSG00000223620 RBM48P1 4 126563509 126564776 processed_pseudogene HGNC:44054 0.9418448 4.3796761 6.1706506 5.0667125 3.9410547 4.6681579 2.7056705 4.0957716 -13.2877124 -13.2877124 -0.0076724 -1.0075274 2.9770905 4.8165366
ENSG00000179886 0.8200205 -0.5188313 4.652804 6.730484 0.0087002 0.4329466 ENSG00000179886 TIGD5 tigger transposable element derived 5 8 143597831 143603224 protein_coding HGNC:18336 1.7774892 3.0161796 2.7051722 2.8356731 1.8633256 2.0433235 3.2769647 3.3086460 2.7872346 2.1028358 1.6900827 1.9111704 3.1432060 2.4567633
ENSG00000197429 1.8946705 1.7744062 2.786084 6.203762 0.0087091 0.4329466 ENSG00000197429 IPP intracisternal A particle-promoted polypeptide 1 45694324 45750653 protein_coding HGNC:6108 0.4891277 0.0836396 1.2727190 2.0477998 1.2720859 -13.2877124 3.7188070 1.5916067 2.3428884 3.4335540 1.6062939 2.7917243 2.8246717 0.9297153
ENSG00000214279 4.3109479 4.6220837 1.810990 7.455389 0.0087643 0.4329466 ENSG00000214279 SCART1 scavenger receptor family member expressed on T cells 1 10 133453928 133523558 protein_coding HGNC:32411 -13.2877124 -2.0779483 -13.2877124 -13.2877124 -13.2877124 -13.2877124 0.9314660 -0.5805733 -0.6214218 0.3200075 1.0409724 0.7250653 0.1047576 -4.6598685
ENSG00000157456 1.1506576 1.2409512 6.519573 6.693693 0.0087901 0.4329466 ENSG00000157456 CCNB2 cyclin B2 15 59105126 59125045 protein_coding HGNC:1580 4.8952731 4.9065017 4.4982895 5.2181243 5.6589538 5.7773506 4.9290461 6.4831820 6.5087305 6.3474777 6.4176689 6.3830001 6.1360273 5.2284874
ENSG00000127329 2.8656975 0.1416554 2.731353 5.998134 0.0088373 0.4329466 ENSG00000127329 PTPRB protein tyrosine phosphatase receptor type B 12 70515870 70637440 protein_coding HGNC:9665 0.9041288 -13.2877124 -13.2877124 -13.2877124 -2.0157534 -13.2877124 1.7732541 -2.0741160 1.6971853 -1.9247330 -0.0999923 -0.7412676 1.2012991 -1.5015114
ENSG00000285154 2.4495613 0.7894529 3.383309 6.386980 0.0088902 0.4329466 ENSG00000285154 olfactory receptor 2A1/2A42 HSCHR7_3_CTG4_4 369356 370276 protein_coding 4.3055199 3.1005683 -13.2877124 -13.2877124 1.2870591 4.0417712 4.8985301 5.8542872 4.9175237 4.6181635 0.2650948 3.6870851 5.2964607 2.9776439
ENSG00000276886 -1.0882100 -0.7206627 9.733247 6.656731 0.0089482 0.4329466 ENSG00000276886 GREM1 gremlin 1, DAN family BMP antagonist HSCHR15_4_CTG8 4932598 4949251 protein_coding HGNC:2001 8.3535434 7.5572568 8.4493017 8.8000496 8.7423221 9.1366310 7.7905205 7.0875386 7.0271949 7.4665295 8.1268415 7.8341379 7.3453139 8.5836003
ENSG00000204348 2.5944632 0.5781839 3.879435 6.514783 0.0089597 0.4329466 ENSG00000204348 DXO decapping exoribonuclease 6 31969810 31972290 protein_coding HGNC:2992 -13.2877124 1.7974978 1.1851923 -13.2877124 3.7066805 4.1682134 5.5595614 5.4598965 2.8097980 3.4409932 1.8276134 2.8489788 5.0325170 2.6160958
ENSG00000220884 1.4185573 1.8155706 3.694329 6.562666 0.0089750 0.4329466 ENSG00000220884 MESTP1 6 128928995 128929988 processed_pseudogene HGNC:29660 1.7277571 4.1441358 4.0675018 2.9497854 3.2492232 3.1323921 4.6061557 5.3655521 4.0797717 4.0118320 6.0005754 5.3247620 4.7812333 3.4096937
ENSG00000120875 -4.2879240 -0.7022859 2.256824 6.544114 0.0089813 0.4329466 ENSG00000120875 DUSP4 dual specificity phosphatase 4 8 29333064 29350684 protein_coding HGNC:3070 1.2556790 -0.0029114 -2.8936142 0.7903767 1.6765274 1.2611493 -13.2877124 -1.9126458 -13.2877124 0.4893343 -0.3550067 0.1280710 -3.4965223 0.8537712
ENSG00000180340 0.4463139 1.6530780 5.224977 6.649921 0.0090446 0.4343440 ENSG00000180340 FZD2 frizzled class receptor 2 17 44557484 44561262 protein_coding HGNC:4040 3.5485681 4.5425058 4.7975281 4.3893683 3.8464234 2.5193492 3.5151803 5.0744422 4.4280710 4.8784330 6.3752554 5.8128378 4.4736752 4.1139455
ENSG00000142794 0.4609106 -5.7259693 2.363369 6.540052 0.0091294 0.4350072 ENSG00000142794 NBPF3 NBPF member 3 1 21440128 21485005 protein_coding HGNC:25076 0.7502206 1.2000077 1.4432496 2.1355533 -0.0746629 -13.2877124 2.8674913 1.8055814 -0.2030086 -13.2877124 -13.2877124 -13.2877124 1.9588286 1.0051010
ENSG00000270728 -1.8661523 -2.0992212 2.447685 6.215864 0.0091624 0.4350072 ENSG00000270728 1 19297080 19297903 transcribed_processed_pseudogene 5.9686025 4.8779778 3.8173691 3.9216520 4.9512447 5.8583326 2.3982168 3.4571552 3.0737233 3.0848878 2.7000006 2.9052415 3.0399339 5.1308590
ENSG00000165617 2.1225213 1.5324289 4.910288 6.623001 0.0091756 0.4350072 ENSG00000165617 DACT1 dishevelled binding antagonist of beta catenin 1 14 58633967 58648321 protein_coding HGNC:17748 3.8161296 3.5651274 1.1743431 0.0798307 2.5717533 1.2854371 4.4726891 3.3944207 4.8653166 2.1506357 4.6599804 3.8934210 4.3661182 2.6483973
ENSG00000235176 -0.0743097 -7.0578021 3.293692 6.800589 0.0092081 0.4350072 ENSG00000235176 POLR1H RNA polymerase I subunit H HSCHR6_MHC_MANN_CTG1 1319656 1325658 protein_coding HGNC:13182 2.8634875 2.2008919 1.4096462 2.1620611 1.9039958 1.0268985 2.3424617 2.6150393 -13.2877124 -13.2877124 -13.2877124 -13.2877124 1.9002288 2.0465923
ENSG00000100439 1.5065226 1.6118923 4.954499 6.615113 0.0092299 0.4350072 ENSG00000100439 ABHD4 abhydrolase domain containing 4, N-acyl phospholipase B 14 22598290 22612963 protein_coding HGNC:20154 2.7445023 2.6609797 2.1250556 3.6533416 2.7339120 3.7694652 4.2211065 3.5250380 5.0375517 3.3575368 5.0010708 4.4016868 4.3924472 3.0663917
ENSG00000077380 -0.5075927 -1.7084999 4.878919 6.603404 0.0092650 0.4350446 ENSG00000077380 DYNC1I2 dynein cytoplasmic 1 intermediate chain 2 2 171687409 171750158 protein_coding HGNC:2964 4.7098365 4.0831105 4.4452131 4.0544206 3.7626745 5.2583633 4.0956684 3.3051019 4.6650798 2.6067397 4.6946058 3.9993840 4.1251965 4.4742946
ENSG00000107731 2.0552159 2.3300445 6.015326 6.580191 0.0093728 0.4384054 ENSG00000107731 UNC5B unc-5 netrin receptor B 10 71212570 71302864 protein_coding HGNC:12568 2.4174081 4.0347209 0.7904067 1.4746909 0.1510223 0.4496575 3.1196173 3.7878912 5.1089029 3.4943912 5.3123192 4.6725464 4.2482570 2.2588566
ENSG00000184254 1.0587094 0.0549403 5.714488 6.567032 0.0094058 0.4384054 ENSG00000184254 ALDH1A3 aldehyde dehydrogenase 1 family member A3 15 100861924 100916626 protein_coding HGNC:409 4.3615055 4.3804640 4.3447037 4.3243831 3.9611124 3.5752044 4.9953968 5.2220407 5.3026993 4.6940087 3.7946072 4.3132894 5.1791487 4.1862668
ENSG00000105664 3.7548329 -0.0893030 9.108648 6.544556 0.0094904 0.4404622 ENSG00000105664 COMP cartilage oligomeric matrix protein 19 18782773 18791305 protein_coding HGNC:2227 8.3310115 5.4621615 2.0974608 2.5579847 4.5747586 5.0820215 8.3376355 5.0838820 11.2511981 4.4322155 7.0330404 6.2531773 9.8636383 6.1765079
ENSG00000270890 1.2663808 0.5741130 3.604248 6.500097 0.0095205 0.4404622 ENSG00000270890 6 143858062 143858689 processed_pseudogene 4.7459005 4.2410782 5.0913668 5.2214209 4.2696355 5.1512496 5.3087861 6.1085017 6.1340795 5.1070197 5.5338753 5.3361773 5.8977995 4.8410316
ENSG00000151881 0.1016252 1.8183292 2.368624 5.994369 0.0095770 0.4404622 ENSG00000151881 TMEM267 transmembrane protein 267 5 43444252 43483893 protein_coding HGNC:26139 -1.3730544 0.1277521 2.6550383 1.4136520 1.2463302 3.1846748 1.6093725 0.0500182 1.4799072 4.6783222 2.5836714 3.9818104 1.1965605 1.8683087
ENSG00000164430 1.6838870 1.9064305 2.521153 5.935403 0.0096233 0.4404622 ENSG00000164430 CGAS cyclic GMP-AMP synthase 6 73413515 73452297 protein_coding HGNC:21367 -0.2917668 0.4560975 1.1114260 1.1601089 -0.7465601 1.3591000 1.4697927 0.5477469 2.5488913 1.4150896 3.9737124 3.1998972 1.7489571 0.6997497
ENSG00000161939 1.8815562 1.4797328 3.362836 6.312090 0.0096236 0.4404622 ENSG00000161939 RNASEK-C17orf49 17 7012635 7017520 protein_coding HGNC:44419 2.6434450 4.1542855 2.6399323 2.2352764 -13.2877124 1.0364583 5.0235664 4.3345953 3.7621801 4.0669045 4.1872840 4.1283495 4.4653608 2.6263216
ENSG00000100568 0.7681081 0.5119051 6.511402 6.499674 0.0097227 0.4433952 ENSG00000100568 VTI1B vesicle transport through interaction with t-SNAREs 1B 14 67647085 67674820 protein_coding HGNC:17793 4.6934637 4.7718484 4.2596535 4.1401925 4.5199214 4.6498552 5.0884348 4.7313740 5.0706671 4.8488303 5.1819919 5.0250071 4.9725838 4.5238542
ENSG00000172830 -1.2220678 -0.0194071 3.848018 6.500748 0.0098490 0.4438855 ENSG00000172830 SSH3 slingshot protein phosphatase 3 11 67303478 67312607 protein_coding HGNC:30581 2.9313990 4.7945852 3.1459396 3.9933349 4.6588532 3.4556509 2.7513116 1.2402862 2.4531072 2.6150787 3.7255803 3.2746411 2.2801335 4.0058799
ENSG00000253485 1.2261646 2.8620085 2.515819 5.822519 0.0098549 0.4438855 ENSG00000253485 PCDHGA5 protocadherin gamma subfamily A, 5 5 141364162 141512975 protein_coding HGNC:8703 -13.2877124 -0.0827623 -0.8536550 -13.2877124 0.1487897 -13.2877124 -13.2877124 1.7997824 -0.2697905 2.4282290 1.7104430 2.1135232 0.5231323 -1.2028110
ENSG00000118849 2.0322881 1.9929030 2.930983 6.012887 0.0098745 0.4438855 ENSG00000118849 RARRES1 retinoic acid receptor responder 1 3 158696892 158732489 protein_coding HGNC:9867 -13.2877124 0.0619227 3.0374428 -13.2877124 2.8540381 1.8957071 2.9127501 3.6047749 3.6055982 4.7097562 3.1544205 4.1322577 3.4091343 1.7517251
ENSG00000113916 -1.2271612 -1.0450295 4.470514 6.488708 0.0098795 0.4438855 ENSG00000113916 BCL6 BCL6 transcription repressor 3 187721377 187745725 protein_coding HGNC:1001 3.6224312 3.5908294 4.3426859 5.3493021 3.1247344 3.5191833 2.7420849 2.7699860 1.5633300 2.9870860 2.8063022 2.8995241 2.4565197 4.1376170
ENSG00000196739 0.3134777 1.4409239 3.948477 6.471226 0.0099085 0.4438855 ENSG00000196739 COL27A1 collagen type XXVII alpha 1 chain 9 114155537 114312511 protein_coding HGNC:22986 2.1147681 1.2011433 1.0748267 1.5420391 0.9764282 0.7472043 2.1431357 1.8482658 2.3130113 2.9243802 2.2756463 2.6361745 2.1140421 1.3500327

We can also make each comparison individually

outPath = "output/fibroblast/DEG"
Test = "FB.SCN2A.vs.WT"
qlf = glmQLFTest(fit, coef=2)
sig.gene.summary(qlf)
##        q0.005 q0.01 q0.05  q0.2 p0.01
## Down        0     0     0    19   159
## NotSig  12675 12675 12671 12614 12276
## Up          3     3     7    45   243
deg = attach_annotations_by_p(qlf, 0.01)
maxAveTPM = data.frame(maxAveTPM = apply(deg[,c("SCN2A", "WT")], 1, max))
deg = cbind(deg, maxAveTPM)
# deg %>%
#   kbl() %>%
#   kable_styling(bootstrap_options = c("striped", "hover", "condensed")) %>%
#   scroll_box(width = "100%", height = "300px")

write.table(deg, file=paste(outPath,ExperimentName,Test,"txt", sep="."), quote=FALSE, row.names=TRUE, col.names=TRUE, sep="\t")

#MvsA plot
ggplot(data = as.data.frame(topTags(qlf, n=NULL)) %>% arrange(desc(PValue)), aes(x=logCPM, y=logFC)) +
  geom_point(aes(color=PValue<0.01)) +
  scale_color_manual(values = xgfs_normal12[c(13,2)]) +
  theme_minimal()

#Volcano plot
ggplot(data = as.data.frame(topTags(qlf, n=NULL)) %>% arrange(desc(PValue)), aes(x=logFC, y=-log10(PValue))) + 
  geom_point(aes(color=PValue<0.01)) +
  scale_color_manual(values = xgfs_normal12[c(13,2)]) +
  theme_minimal()

SCN2AUp = row.names(deg[deg[,"logFC"] > 0 & deg[,"maxAveTPM"] > log2(0.1),])
SCN2ADown = row.names(deg[deg[,"logFC"] < 0 & deg[,"maxAveTPM"] > log2(0.1),])
Test = "FB.CHD2.vs.WT"
qlf = glmQLFTest(fit, coef=3)
sig.gene.summary(qlf)
##        q0.005 q0.01 q0.05  q0.2 p0.01
## Down        0     0     0     1    53
## NotSig  12677 12676 12674 12668 12483
## Up          1     2     4     9   142
deg = attach_annotations_by_p(qlf, 0.01)
maxAveTPM = data.frame(maxAveTPM = apply(deg[,c("CHD2", "WT")], 1, max))
deg = cbind(deg, maxAveTPM)
# deg %>%
#   kbl() %>%
#   kable_styling(bootstrap_options = c("striped", "hover", "condensed")) %>%
#   scroll_box(width = "100%", height = "300px")

write.table(deg, file=paste(outPath,ExperimentName,Test,"txt", sep="."), quote=FALSE, row.names=TRUE, col.names=TRUE, sep="\t")

#MvsA plot
ggplot(data = as.data.frame(topTags(qlf, n=NULL)) %>% arrange(desc(PValue)), aes(x=logCPM, y=logFC)) +
  geom_point(aes(color=PValue<0.01)) +
  scale_color_manual(values = xgfs_normal12[c(13,2)]) +
  theme_minimal()

#Volcano plot
ggplot(data = as.data.frame(topTags(qlf, n=NULL)) %>% arrange(desc(PValue)), aes(x=logFC, y=-log10(PValue))) + 
  geom_point(aes(color=PValue<0.01)) +
  scale_color_manual(values = xgfs_normal12[c(13,2)]) +
  theme_minimal()

CHD2Up = row.names(deg[deg[,"logFC"] > 0 & deg[,"maxAveTPM"] > log2(0.1),])
CHD2Down = row.names(deg[deg[,"logFC"] < 0 & deg[,"maxAveTPM"] > log2(0.1),])
Test = "FB"
venn.diagram(list(CHD2 = CHD2Up, SCN2A = SCN2AUp), filename = paste(outPath,ExperimentName,Test,"up.png", sep="."), imagetype = "png", main = paste(Test, "up regulated", sep = " "), col = xgfs_normal12[1:2])
## [1] 1
venn.diagram(list(CHD2 = CHD2Down, SCN2A = SCN2ADown), filename = paste(outPath,ExperimentName,Test,"down.png", sep="."), imagetype = "png", main = paste(Test, "down regulated", sep = " "), col = xgfs_normal12[1:2])
## [1] 1
SCN2AUp.FB = SCN2AUp
SCN2ADown.FB = SCN2ADown
CHD2Up.FB = CHD2Up
CHD2Down.FB = CHD2Down
Venn diagram up regulated
Venn diagram up regulated
Venn diagram down regulated
Venn diagram down regulated

Note:

1b. Day 10

Test the differences between WT, SCN2A and CHD2 at day 10 of transdifferentiation

fit = test_a_diff_state(diffState = "day_10", countTable = counts.current)
qlf = glmQLFTest(fit, coef=2:3)
sig.gene.summary(qlf)
##        q0.005 q0.01 q0.05  q0.2 p0.01
## NotSig  13417 13416 13416 13406 13190
## Sig         0     1     1    11   227
d10.genes.expressed = rownames(qlf$table)
attach_annotations_by_p(qlf, 0.01) %>%
  kbl() %>%
  kable_styling(bootstrap_options = c("striped", "hover", "condensed")) %>%
  scroll_box(width = "100%", height = "300px")
logFC.fSCN2A logFC.fCHD2 logCPM F PValue FDR ensembl_gene_id hgnc_symbol entrezgene_description chromosome_name start_position end_position gene_biotype hgnc_id CON_1_d10 CON_2_d10 CON_3_d10 CON_4_d10 SCN2A_1_d10 SCN2A_2_d10 SCN2A_3_d10 CHD2_1_d10 CHD2_2_d10 CHD2 SCN2A WT
ENSG00000205670 1.1109690 -2.8670979 5.111151 56.216825 0.0000007 0.0096303 ENSG00000205670 SMIM11 small integral membrane protein 11 21 34375480 34416961 protein_coding HGNC:1293 1.7279004 1.8757907 2.3472333 2.6248601 3.4989420 3.2143996 3.1711564 -0.2125826 -0.9589814 -0.5380409 3.3023126 2.1889706
ENSG00000145423 1.6377410 -3.9650408 4.829294 30.689430 0.0000113 0.0744249 ENSG00000145423 SFRP2 secreted frizzled related protein 2 4 153780591 153789083 protein_coding HGNC:10777 2.8385954 1.9235029 3.3462642 3.5103637 4.8870347 3.7472545 5.2329475 -0.3310041 -2.5659723 -1.0531075 4.7482138 3.0229027
ENSG00000167654 -1.8586439 -4.4124957 3.351054 27.201655 0.0000166 0.0744249 ENSG00000167654 ATCAY ATCAY kinesin light chain interacting caytaxin 19 3879864 3928082 protein_coding HGNC:779 1.2929837 1.5053285 1.7844562 1.0400269 -0.2760868 -0.2171520 0.0090848 -2.6193858 -2.4218631 -2.5172467 -0.1560660 1.4316748
ENSG00000274803 -4.7279520 -8.5497244 3.297805 22.596314 0.0000329 0.1102878 ENSG00000274803 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB HSCHR5_1_CTG1_1 985599 1097795 protein_coding HGNC:13652 0.8649211 -0.2879325 1.9532470 -0.1561801 -13.2877124 -0.7935493 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -2.3780120 0.8895055
ENSG00000168280 -1.6429411 -3.1411079 4.864263 24.751557 0.0000532 0.1427689 ENSG00000168280 KIF5C kinesin family member 5C 2 148875227 149026759 protein_coding HGNC:6325 2.5084451 2.4759292 2.9638224 2.1493872 1.6612128 -0.0883897 0.7404112 0.0756805 1.6581863 1.0738381 0.9446201 2.5540728
ENSG00000228299 9.2721868 7.0535966 5.991991 21.269655 0.0000892 0.1824389 ENSG00000228299 HLA-C major histocompatibility complex, class I, C HSCHR6_MHC_DBB_CTG1 2526549 2529920 protein_coding HGNC:4933 -13.2877124 -13.2877124 -0.7530836 -13.2877124 5.2226331 7.0679616 7.6151456 6.1786337 -13.2877124 5.1786357 6.9369237 -2.7523544
ENSG00000254245 -0.8293449 1.8080382 4.565303 21.912353 0.0000969 0.1824389 ENSG00000254245 PCDHGA3 protocadherin gamma subfamily A, 3 5 141343829 141512975 protein_coding HGNC:8701 2.0890106 2.2563788 2.0353779 0.6936560 2.0619932 0.5106885 1.1658566 3.6409081 2.6946877 3.2440209 1.3866311 1.8825597
ENSG00000242265 1.0532422 -2.0926882 5.210991 21.284756 0.0001088 0.1824389 ENSG00000242265 PEG10 paternally expressed 10 7 94656325 94669695 protein_coding HGNC:14005 4.0088744 2.0018033 2.2697546 3.5097194 4.5132524 3.6865599 4.3025930 0.3319734 -0.6381957 -0.0730518 4.2080361 3.1825463
ENSG00000104332 -1.0134353 -3.1659616 5.700179 20.487815 0.0001296 0.1932381 ENSG00000104332 SFRP1 secreted frizzled related protein 1 8 41261962 41309473 protein_coding HGNC:10776 3.9264478 3.4237250 3.4913146 4.3097311 2.3617981 2.7371009 3.4832480 1.2789363 -0.3836743 0.6749505 2.9380032 3.8332253
ENSG00000169432 -1.9965164 -4.1318240 2.730590 17.197044 0.0001503 0.1953724 ENSG00000169432 SCN9A sodium voltage-gated channel alpha subunit 9 2 166195185 166376001 protein_coding HGNC:10597 0.8072428 0.9149257 0.8664364 -0.4965332 -0.9351668 -1.0184629 0.2491565 -2.8731434 -0.1636670 -0.9584178 -0.4440949 0.6246386
ENSG00000165507 0.9894895 2.1080638 6.627775 19.536910 0.0001602 0.1953724 ENSG00000165507 DEPP1 DEPP autophagy regulator 1 10 44970981 44978809 protein_coding HGNC:23355 5.3448830 4.6217167 4.3611750 5.1185411 6.3556513 5.9077408 6.6080715 7.6372956 6.5798852 7.2033740 6.3187839 4.9135204
ENSG00000115648 0.6637055 2.8296577 4.787978 19.148913 0.0001816 0.2030415 ENSG00000115648 MLPH melanophilin 2 237485428 237555322 protein_coding HGNC:29643 2.7780062 1.7881357 0.1319937 3.8152768 3.2319968 3.4589770 2.2336810 5.6774482 4.7123012 5.2741222 3.0643962 2.6716111
ENSG00000283589 4.2431217 1.1638787 2.686979 13.899336 0.0002423 0.2500604 ENSG00000283589 GOLGA8N golgin A8 family member N HSCHR15_6_CTG8 2111786 2125658 protein_coding HGNC:44405 -1.7461172 -13.2877124 -13.2877124 -2.7816429 1.5893800 -0.4985191 1.8194708 -1.3659793 -1.4289970 -1.3971441 1.2723318 -3.1722486
ENSG00000204469 -8.1719015 -10.3683092 4.991044 18.617891 0.0003142 0.3011576 ENSG00000204469 PRRC2A proline rich coiled-coil 2A 6 31620715 31637771 protein_coding HGNC:13918 4.1279226 3.4733313 -2.1966473 2.8831107 -1.0479587 -13.2877124 -3.0299121 -13.2877124 -13.2877124 -13.2877124 -2.3071279 3.1773411
ENSG00000137801 0.0262683 -2.5596675 7.996566 16.415296 0.0003523 0.3150825 ENSG00000137801 THBS1 thrombospondin 1 15 39581079 39599466 protein_coding HGNC:11785 5.6404140 4.9126265 5.6298109 5.8846672 6.1183209 5.6366534 5.5489828 4.2539723 3.5298584 3.9368772 5.7904144 5.5591767
ENSG00000115596 0.8455571 4.1873444 1.683187 11.552663 0.0004815 0.4037877 ENSG00000115596 WNT6 Wnt family member 6 2 218859805 218874233 protein_coding HGNC:12785 -13.2877124 -1.6824875 -1.0461373 -13.2877124 -13.2877124 -0.1101169 -1.8813426 2.5981708 1.3846074 2.1153985 -1.3242816 -2.3291452
ENSG00000165973 0.8718048 4.7395410 2.035979 11.162162 0.0005796 0.4314633 ENSG00000165973 NELL1 neural EGFL like 1 11 20669551 21575686 protein_coding HGNC:7750 -13.2877124 -1.2367924 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -0.5197742 1.4369406 2.1892252 1.8615715 -2.1043233 -3.2357721
ENSG00000205213 -0.6779152 -3.0626138 3.798560 14.422854 0.0005923 0.4314633 ENSG00000205213 LGR4 leucine rich repeat containing G protein-coupled receptor 4 11 27365961 27472790 protein_coding HGNC:13299 4.5831596 2.9476684 1.4511721 1.1961544 1.2998448 -0.0778052 1.3663502 -1.3449047 -1.7428300 -1.5301911 0.9970387 3.1981256
ENSG00000017483 0.8104196 3.0098249 4.234887 14.561185 0.0006110 0.4314633 ENSG00000017483 SLC38A5 solute carrier family 38 member 5 X 48458537 48470260 protein_coding HGNC:18070 3.5926969 1.1643023 0.0294656 2.7056367 3.8544549 4.5717265 2.2958934 5.1962599 5.8797335 5.5780980 3.8465268 2.4495511
ENSG00000118971 0.1210536 -1.9403977 6.479976 14.218537 0.0006583 0.4416314 ENSG00000118971 CCND2 cyclin D2 12 4269771 4305353 protein_coding HGNC:1583 3.4159502 3.1812467 3.1329181 4.3220903 3.8280078 3.6640953 4.0309842 1.4934665 1.8364025 1.6751001 3.8488581 3.6004674
ENSG00000160111 0.3052606 3.0614858 2.354876 11.832118 0.0007427 0.4425982 ENSG00000160111 CPAMD8 C3 and PZP like alpha-2-macroglobulin domain containing 8 19 16892951 17026815 protein_coding HGNC:23228 0.4516052 -1.8298698 -2.1918605 -13.2877124 -0.3429875 0.5032999 -2.0285046 2.2223038 1.8132374 2.0322208 -0.2916109 -1.0986446
ENSG00000197467 -0.9520930 1.5497010 3.663131 13.800174 0.0007505 0.4425982 ENSG00000197467 COL13A1 collagen type XIII alpha 1 chain 10 69801880 69964275 protein_coding HGNC:2190 1.8695990 1.3102214 -0.0271442 2.1972864 2.1202998 0.3796786 0.9394523 3.5343155 3.1617760 3.3600374 1.3347010 1.5486374
ENSG00000105825 1.3037831 -1.6871851 6.079915 13.357398 0.0008589 0.4425982 ENSG00000105825 TFPI2 tissue factor pathway inhibitor 2 7 93885396 93890753 protein_coding HGNC:11761 5.1378723 4.1513688 3.2912051 5.3712959 6.2995564 5.5501518 6.5037886 2.6405834 3.4846938 3.1235131 6.1724099 4.7026674
ENSG00000168237 0.3335141 -3.7780785 6.694987 13.137480 0.0009231 0.4425982 ENSG00000168237 GLYCTK glycerate kinase 3 52287089 52295257 protein_coding HGNC:24247 5.1591939 3.3703807 6.8853731 5.5198300 5.2560339 6.2449395 6.6139252 2.4300960 2.0284599 2.2432096 6.1429824 5.7154777
ENSG00000154258 -0.0559019 -7.6200980 3.139800 13.885999 0.0009744 0.4425982 ENSG00000154258 ABCA9 ATP binding cassette subfamily A member 9 17 68974488 69060949 protein_coding HGNC:39 2.4871804 -0.0475367 1.0178934 1.4121230 0.2108464 0.3432964 0.7537688 -13.2877124 -13.2877124 -13.2877124 0.4549518 1.4932174
ENSG00000008394 0.6284339 -5.4315692 3.442209 12.893930 0.0009859 0.4425982 ENSG00000008394 MGST1 microsomal glutathione S-transferase 1 12 16347142 16609259 protein_coding HGNC:7061 3.7723263 1.4563178 4.5962984 3.7300340 5.1762131 3.6014976 4.2881949 -1.2645887 -13.2877124 -2.2642422 4.4989605 3.7513296
ENSG00000234046 0.0000000 8.4968005 2.379406 21.237015 0.0009883 0.4425982 ENSG00000234046 TRIM26 tripartite motif containing 26 HSCHR6_MHC_SSTO_CTG1 1483342 1512318 protein_coding HGNC:12962 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 2.9744884 2.4452105 2.7339864 -13.2877124 -13.2877124
ENSG00000007384 0.2192033 1.8962821 5.188225 12.871332 0.0010067 0.4425982 ENSG00000007384 RHBDF1 rhomboid 5 homolog 1 16 58059 76355 protein_coding HGNC:20561 4.9570674 3.7113923 2.5766701 2.4842116 4.2122701 3.2420682 3.4755852 4.7677630 4.9206257 4.8462180 3.7049273 3.8001679
ENSG00000160200 1.9484898 -0.9846753 3.615289 12.758616 0.0010308 0.4425982 ENSG00000160200 CBS cystathionine beta-synthase 21 43053191 43076943 protein_coding HGNC:1550 3.9703794 2.3958385 0.0652359 2.2395700 2.9207704 3.2374290 3.7355614 2.4681800 2.0895490 2.2912505 3.3374250 2.7391188
ENSG00000188833 0.6340263 2.4783781 3.419000 12.679238 0.0010528 0.4425982 ENSG00000188833 ENTPD8 ectonucleoside triphosphate diphosphohydrolase 8 9 137434364 137441816 protein_coding HGNC:24860 0.2863785 1.4036086 0.7689346 -0.3079800 1.9039938 1.6627073 0.8143765 2.6349011 3.9332913 3.4254825 1.5305897 0.6728743
ENSG00000132821 -2.3442558 -1.5482852 2.992106 12.153052 0.0010832 0.4425982 ENSG00000132821 VSTM2L V-set and transmembrane domain containing 2 like 20 37903111 37945350 protein_coding HGNC:16096 2.7550230 2.8443157 3.6772428 2.2900186 1.7292386 0.0115772 1.5976041 2.0208172 1.2625089 1.6909226 1.2927794 2.9825627
ENSG00000183311 -3.6059940 -3.9556202 2.433442 10.300078 0.0011152 0.4425982 ENSG00000183311 TUBB tubulin beta class I HSCHR6_MHC_QBL_CTG1 1975313 1980539 protein_coding HGNC:20778 2.1071793 1.7161279 0.7357301 1.0468032 -13.2877124 -0.6001464 -13.2877124 -1.5406313 -13.2877124 -2.5402117 -2.1846718 1.5014649
ENSG00000232653 -2.5575513 -0.0982507 3.450142 11.940580 0.0011666 0.4425982 ENSG00000232653 GOLGA8N golgin A8 family member N 15 32593456 32607310 protein_coding HGNC:44405 1.7567492 0.7788982 1.9097074 3.4515226 1.4031597 -0.1496838 0.3535480 2.6452172 2.6542463 2.6497389 0.6852522 2.3068723
ENSG00000158270 -0.6127930 -1.7261682 5.876244 12.374673 0.0011751 0.4425982 ENSG00000158270 COLEC12 collectin subfamily member 12 18 316737 500722 protein_coding HGNC:16016 3.0665532 3.1031770 4.0745003 3.8280717 3.5029646 2.5243757 3.3274172 2.0994544 1.7926309 1.9541840 3.1767667 3.5855999
ENSG00000233564 -1.6094214 -4.8442323 4.305777 11.791539 0.0011838 0.4425982 ENSG00000233564 PRR3 proline rich 3 HSCHR6_MHC_MCF_CTG1 1900932 1907769 protein_coding HGNC:21149 3.0561978 4.1797210 3.8454717 3.6660564 -13.2877124 3.6966496 2.4390385 2.5500651 2.6242862 2.5876530 2.6157925 3.7417115
ENSG00000206406 -2.2030896 3.3228046 2.682846 10.606853 0.0012292 0.4425982 ENSG00000206406 CSNK2B casein kinase 2 beta HSCHR6_MHC_QBL_CTG1 2921060 2929370 protein_coding HGNC:2460 -13.2877124 -13.2877124 3.2513866 -13.2877124 -0.1222212 -0.4761530 -13.2877124 3.6229141 4.9455371 4.4307654 -0.8732351 1.2514321
ENSG00000179431 -0.7258902 -2.0518807 4.075301 12.209142 0.0012620 0.4425982 ENSG00000179431 FJX1 four-jointed box kinase 1 11 35618460 35620865 protein_coding HGNC:17166 2.6575611 3.0514170 2.6887616 3.2933334 2.4390912 2.4732648 2.7955542 0.9181702 0.9052746 0.9117368 2.5784531 2.9472575
ENSG00000225164 0.0000000 9.5098889 3.256448 19.124772 0.0013538 0.4425982 ENSG00000225164 PRRC2A proline rich coiled-coil 2A HSCHR6_MHC_COX_CTG1 3098008 3115058 protein_coding HGNC:13918 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -0.9577843 3.0201178 2.1088897 -13.2877124 -13.2877124
ENSG00000131969 3.4620508 2.9384847 2.212305 9.908798 0.0013759 0.4425982 ENSG00000131969 ABHD12B abhydrolase domain containing 12B 14 50872053 50904970 protein_coding HGNC:19837 -13.2877124 -0.5487546 -1.6944146 -0.3734338 -0.0329332 2.1736900 3.3812698 1.4594122 0.9845456 1.2414293 2.4068171 -1.1806320
ENSG00000111203 2.0252827 1.0617995 3.849232 11.889978 0.0014008 0.4425982 ENSG00000111203 ITFG2 integrin alpha FG-GAP repeat containing 2 12 2812622 2859791 protein_coding HGNC:30879 2.7923000 1.6070239 2.6607938 1.0588665 3.0775479 4.2321180 4.5872816 3.0355227 2.5246913 2.8025994 4.0951740 2.2001170
ENSG00000138080 -0.3085759 0.9234370 6.803911 11.835285 0.0014050 0.4425982 ENSG00000138080 EMILIN1 elastin microfibril interfacer 1 2 27078615 27086403 protein_coding HGNC:19880 4.3117245 4.5669276 4.2886445 3.9048330 4.2237666 4.0446854 4.3756133 5.3180839 5.2273308 5.2734208 4.2210016 4.2869440
ENSG00000104903 -3.3250628 -1.1489643 2.511549 10.305493 0.0014055 0.4425982 ENSG00000104903 LYL1 LYL1 basic helix-loop-helix family member 19 13099033 13103161 protein_coding HGNC:6734 2.9827813 0.8206773 2.3196176 2.3912148 -0.5989048 -0.9288442 -1.6342716 1.6997897 0.2398159 1.1471041 -0.9926446 2.3153713
ENSG00000137959 -3.7493182 0.2584196 3.807364 10.692692 0.0014185 0.4425982 ENSG00000137959 IFI44L interferon induced protein 44 like 1 78619902 78646145 protein_coding HGNC:17817 1.7298025 2.2748130 2.9152723 2.6758629 -2.5287147 -3.8546069 -1.4952840 -1.1490630 2.9017418 1.9862651 -2.3288429 2.4653268
ENSG00000284254 -7.4811554 -0.5334848 2.701008 13.242396 0.0015294 0.4458292 ENSG00000284254 HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 HG30_PATCH 380457 401011 protein_coding HGNC:5041 3.0319109 1.1206134 3.3655159 2.0891293 -13.2877124 -13.2877124 -13.2877124 2.2586082 1.8542909 2.0705672 -13.2877124 2.6389408
ENSG00000176788 0.1613143 -1.3599672 7.307437 11.566388 0.0015398 0.4458292 ENSG00000176788 BASP1 brain abundant membrane attached signal protein 1 5 17065598 17276843 protein_coding HGNC:957 5.8035074 6.0800619 6.7326703 6.8156881 6.7469077 6.4201068 6.9583196 4.9973049 5.1343036 5.0674296 6.7251635 6.4199656
ENSG00000092969 -0.2834416 -1.4033315 6.371103 11.542649 0.0015533 0.4458292 ENSG00000092969 TGFB2 transforming growth factor beta 2 1 218345336 218444619 protein_coding HGNC:11768 3.7968237 3.6734049 3.5328547 3.9740996 3.4259394 3.5007973 3.8386479 2.6646917 2.0077222 2.3732843 3.5998940 3.7534566
ENSG00000179862 2.2349505 3.7131524 2.067125 9.538592 0.0015626 0.4458292 ENSG00000179862 CITED4 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4 1 40861054 40862363 protein_coding HGNC:18696 -1.8995767 -1.2143842 -13.2877124 0.2570867 0.2725548 1.5266017 1.5862527 1.7661346 3.1952569 2.6508608 1.2411676 -1.0784555
ENSG00000138744 0.7233345 2.3220666 2.700407 10.969078 0.0016308 0.4458292 ENSG00000138744 NAAA N-acylethanolamine acid amidase 4 75910655 75941013 protein_coding HGNC:736 0.9577222 0.9774074 -0.5936549 0.2790754 1.6219862 3.3412615 2.3761467 3.2666170 2.9703849 3.1260909 2.6170147 0.5328765
ENSG00000112246 1.1429846 1.6317212 5.093223 11.403473 0.0016422 0.4458292 ENSG00000112246 SIM1 SIM bHLH transcription factor 1 6 100385009 100464921 protein_coding HGNC:10882 0.6727892 1.4008822 1.3227911 2.3554956 2.6243665 2.2124710 2.9492342 2.9156320 3.1835241 3.0557872 2.6263775 1.5672991
ENSG00000168497 -0.3204066 3.0347842 2.927116 10.483066 0.0016614 0.4458292 ENSG00000168497 CAVIN2 caveolae associated protein 2 2 191834310 191847088 protein_coding HGNC:10690 -13.2877124 -0.3005248 0.4745991 -0.7300237 -0.3982655 -2.0476903 -0.2362366 3.3873086 0.3313819 2.5511255 -0.6977507 -0.5122651
ENSG00000101445 1.5181257 2.0209976 5.213237 11.244765 0.0017377 0.4537567 ENSG00000101445 PPP1R16B protein phosphatase 1 regulatory subunit 16B 20 38805697 38923024 protein_coding HGNC:15850 1.0125823 1.7832249 0.0368943 -0.1315835 2.3051992 2.6870761 2.7892600 3.0319066 2.9835163 3.0079143 2.6084289 0.8871735
ENSG00000147488 -1.8282392 -3.6916631 4.236861 11.114090 0.0017586 0.4537567 ENSG00000147488 ST18 ST18 C2H2C-type zinc finger transcription factor 8 52110838 52460959 protein_coding HGNC:18695 2.3873545 2.1949229 3.8728472 2.6590788 2.3814310 -0.2480205 2.1797910 0.2758748 -0.6232540 -0.1047493 1.8187774 2.9437857
ENSG00000172803 1.0927335 -0.3294587 5.663963 11.068735 0.0018360 0.4571760 ENSG00000172803 SNX32 sorting nexin 32 11 65833834 65856896 protein_coding HGNC:26423 3.1856533 4.0130983 4.0857160 3.9391584 4.9308100 5.0048908 5.1543785 3.8681000 2.9787991 3.4909141 5.0330463 3.8470769
ENSG00000224552 -5.2752805 -7.8924466 2.709324 11.232758 0.0018602 0.4571760 ENSG00000224552 ABHD16A abhydrolase domain containing 16A, phospholipase HSCHR6_MHC_MANN_CTG1 2991996 3008464 protein_coding HGNC:13921 3.2971644 3.6871195 -13.2877124 3.2751315 -13.2877124 -0.1601113 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -1.7447516 3.0175334
ENSG00000109610 2.4180852 -1.6293247 2.353499 9.677085 0.0018741 0.4571760 ENSG00000109610 SOD3 superoxide dismutase 3 4 24789912 24800842 protein_coding HGNC:11181 0.5536200 -0.0237610 0.2901519 0.1267681 2.7263129 0.8109744 3.7405501 0.4679044 -13.2877124 -0.5319913 2.8572193 0.2527919
ENSG00000127533 -0.8207226 2.4328472 2.812399 10.019559 0.0020695 0.4746968 ENSG00000127533 F2RL3 F2R like thrombin or trypsin receptor 3 19 16888999 16892606 protein_coding HGNC:3540 -1.9260537 0.9304126 -1.6012863 -2.9306333 -1.9217509 -0.4424184 -1.4379085 1.6670819 2.4273203 2.0967088 -1.1319075 -0.6050967
ENSG00000196497 -0.8173209 -3.9896520 3.696830 10.251188 0.0021108 0.4746968 ENSG00000196497 IPO4 importin 4 14 24180219 24188869 protein_coding HGNC:19426 3.3215385 2.5277064 1.8369700 3.6895111 3.2471125 4.2075146 4.0326916 0.6515665 1.8076958 1.3424694 3.8854603 3.0107050
ENSG00000100156 0.1492725 2.2287968 2.448703 10.007818 0.0021143 0.4746968 ENSG00000100156 SLC16A8 solute carrier family 16 member 8 22 38078134 38084184 protein_coding HGNC:16270 0.0662049 0.2544223 0.7898511 1.0572832 1.1994299 0.3254371 1.5524051 2.7696482 2.7009164 2.7356916 1.1116076 0.5968693
ENSG00000085365 1.1029400 0.6018600 5.719130 10.672264 0.0021160 0.4746968 ENSG00000085365 SCAMP1 secretory carrier membrane protein 1 5 78360611 78480739 protein_coding HGNC:10563 2.9002686 2.5603853 2.1300429 2.0289061 3.5616442 3.1990570 3.2831090 2.8789803 2.7692362 2.8251516 3.3564115 2.4477487
ENSG00000134864 0.1187021 1.2949094 6.972478 10.649097 0.0021302 0.4746968 ENSG00000134864 GGACT gamma-glutamylamine cyclotransferase 13 100530164 100589528 protein_coding HGNC:25100 4.7324255 4.5462905 5.2670380 5.0913667 5.1820154 4.9741292 5.0385688 6.7495348 5.4892656 6.2528490 5.0675424 4.9371904
ENSG00000156299 2.0587175 -0.4450971 2.695254 10.202559 0.0021582 0.4746968 ENSG00000156299 TIAM1 TIAM Rac1 associated GEF 1 21 31118416 31559977 protein_coding HGNC:11805 -0.2541311 -2.1038723 -1.0897033 -1.4186623 0.1355716 2.1644899 2.3621495 -1.4454799 -1.7387460 -1.5846740 1.8376695 -1.0626240
ENSG00000144355 -4.0365073 -4.9222596 3.267762 9.033314 0.0021966 0.4753542 ENSG00000144355 DLX1 distal-less homeobox 1 2 172084740 172089677 protein_coding HGNC:2914 3.0216403 -0.5274207 5.1540587 2.0795672 -13.2877124 2.2421506 -13.2877124 0.7277436 -13.2877124 -0.2721693 0.6572492 3.6043013
ENSG00000157087 -0.5043753 -2.2337715 4.715261 10.509342 0.0022629 0.4819212 ENSG00000157087 ATP2B2 ATPase plasma membrane Ca2+ transporting 2 3 10324023 10708007 protein_coding HGNC:815 1.0712272 2.5572912 2.4194588 2.5081817 1.4092302 1.9020002 2.4501922 -0.5940512 1.3197069 0.6593008 1.9828450 2.2498976
ENSG00000185567 -0.7401934 0.4010970 7.041804 10.314589 0.0024082 0.4847097 ENSG00000185567 AHNAK2 AHNAK nucleoprotein 2 14 104937244 104978374 protein_coding HGNC:20125 4.8392513 4.3175386 4.4160214 3.3841410 3.6880512 3.3047937 3.8281415 4.9904458 4.5429871 4.7839951 3.6234748 4.3282929
ENSG00000156535 -0.3727370 -1.4097313 4.924772 10.306773 0.0024282 0.4847097 ENSG00000156535 CD109 CD109 molecule 6 73695785 73828316 protein_coding HGNC:21685 1.8103933 1.3090621 1.8251954 1.5185986 1.6410040 1.1888313 1.2870768 0.4033528 0.0647711 0.2439725 1.3856773 1.6315537
ENSG00000106070 -0.0556769 -2.0774939 3.930836 10.311762 0.0024344 0.4847097 ENSG00000106070 GRB10 growth factor receptor bound protein 10 7 50590063 50793462 protein_coding HGNC:4564 2.0080691 2.9010731 1.1806348 2.4004267 1.0886023 2.5079593 1.5374238 0.1787758 0.4167241 0.3026501 1.8369453 2.2508564
ENSG00000070182 1.0047520 0.4675623 7.701029 10.272457 0.0024458 0.4847097 ENSG00000070182 SPTB spectrin beta, erythrocytic 14 64746283 64879907 protein_coding HGNC:11274 3.4098104 3.8632184 4.0110886 3.9612146 5.1080568 4.7535721 5.0061456 4.4226294 4.2329124 4.3308875 4.9634866 3.8298465
ENSG00000185008 -4.0504021 -2.3216673 3.194014 9.115677 0.0024566 0.4847097 ENSG00000185008 ROBO2 roundabout guidance receptor 2 3 75906695 77649964 protein_coding HGNC:10250 -0.0104468 0.2729488 3.7566430 -0.3918645 -13.2877124 -1.2811444 -1.5631090 -0.6933388 -1.1282100 -0.8944506 -2.0000190 2.0426129
ENSG00000187244 -1.3307511 0.9282443 4.471305 10.218380 0.0025337 0.4876006 ENSG00000187244 BCAM basal cell adhesion molecule (Lutheran blood group) 19 44809071 44821421 protein_coding HGNC:6722 2.8482223 3.2440472 3.1977398 1.2039453 1.5366706 1.7608120 2.5502304 4.3361799 4.5188857 4.4304231 2.0176141 2.8152934
ENSG00000095303 -1.3151250 1.2854696 3.827693 10.171468 0.0025439 0.4876006 ENSG00000095303 PTGS1 prostaglandin-endoperoxide synthase 1 9 122370530 122395703 protein_coding HGNC:9604 1.6795526 2.7398511 0.8898504 -0.9132923 1.2919477 -0.5378890 1.1850997 3.0977101 3.1968844 3.1481493 0.8509738 1.6167407
ENSG00000225972 5.3153463 0.4829493 7.173928 10.037479 0.0027120 0.4920083 ENSG00000225972 MTND1P23 1 629062 629433 unprocessed_pseudogene HGNC:42092 6.5295148 3.8804919 5.7801248 6.4314709 6.5267854 4.8917045 12.9285377 6.6509177 6.1047169 6.4035132 11.3659572 5.9563604
ENSG00000161981 0.3981785 1.3846059 4.422801 10.012696 0.0027327 0.4920083 ENSG00000161981 SNRNP25 small nuclear ribonucleoprotein U11/U12 subunit 25 16 53828 57669 protein_coding HGNC:14161 3.4204968 3.3191257 2.8046236 2.8251779 3.5071650 3.5444692 4.5905626 4.7168409 4.3163367 4.5304423 3.9736495 3.1194174
ENSG00000276561 -4.2075758 -1.7310106 2.543450 8.998290 0.0027345 0.4920083 ENSG00000276561 IRF7 interferon regulatory factor 7 HSCHR11_1_CTG8 142446 145898 protein_coding HGNC:6122 3.4605077 0.8661404 3.4017038 3.4440725 -13.2877124 -0.8070004 -0.1140852 1.7661198 -0.0409703 1.1287487 -1.0042023 3.0994231
ENSG00000250492 -0.7464510 2.0473500 2.895811 9.575361 0.0027882 0.4920083 ENSG00000250492 INTS6P1 5 39718984 39721513 processed_pseudogene HGNC:43921 0.6914413 0.5845825 0.1224806 0.1542643 -2.4193914 0.9520346 -1.5207736 1.8663027 2.9768147 2.5258723 -0.2804322 0.4103302
ENSG00000171532 -0.9919058 -2.3233557 3.913187 9.953453 0.0027930 0.4920083 ENSG00000171532 NEUROD2 neuronal differentiation 2 17 39603536 39609777 protein_coding HGNC:7763 1.7029966 2.9472135 2.6185474 1.7324203 1.5400615 1.8806409 1.3806203 0.4962547 -1.5444810 -0.1898728 1.6157708 2.3527944
ENSG00000067798 0.4207731 -2.7030185 3.642499 9.718523 0.0028685 0.4920083 ENSG00000067798 NAV3 neuron navigator 3 12 77324641 78213010 protein_coding HGNC:15998 2.3957053 -0.2215929 3.4456540 0.4742024 2.6657614 1.3733943 3.0778210 0.0151807 -2.2821299 -0.7176527 2.5343769 2.2019914
ENSG00000133110 0.5475309 -2.2669504 9.136463 9.843072 0.0028748 0.4920083 ENSG00000133110 POSTN periostin 13 37562583 37598844 protein_coding HGNC:16953 8.2441975 6.0771403 7.1872100 6.1845473 7.1009990 7.7770051 8.4469458 4.8067055 5.0540050 4.9356479 7.8777151 7.2026121
ENSG00000118600 2.3848362 1.7562353 4.223217 9.856881 0.0028887 0.4920083 ENSG00000118600 RXYLT1 ribitol xylosyltransferase 1 12 63779833 63809792 protein_coding HGNC:13530 -1.6005904 0.1208111 1.0284539 2.2227072 3.4675183 2.7594405 3.0567474 2.1847208 1.9152880 2.0562849 3.1240033 1.0222982
ENSG00000229698 -6.3792969 -8.0533180 2.827400 11.114953 0.0029021 0.4920083 ENSG00000229698 HLA-F major histocompatibility complex, class I, F HSCHR6_MHC_SSTO_CTG1 1029074 1044770 protein_coding HGNC:4963 4.7204271 2.8689165 4.8083125 2.9912127 -13.2877124 -13.2877124 -0.8301263 -13.2877124 -13.2877124 -13.2877124 -2.4145759 4.1218004
ENSG00000117632 -1.1964385 -1.1382124 5.132757 9.770912 0.0029693 0.4920083 ENSG00000117632 STMN1 stathmin 1 1 25884181 25906991 protein_coding HGNC:6510 4.5398392 5.2389894 5.8830056 4.5151527 4.3844593 4.5556683 4.5047247 4.5870400 4.1475646 4.3839724 4.4833895 5.1589372
ENSG00000188959 1.8122832 -1.3958757 2.588106 9.216033 0.0029703 0.4920083 ENSG00000188959 C9orf152 chromosome 9 open reading frame 152 9 110190048 110208159 protein_coding HGNC:31455 0.7833577 -0.6292688 -0.7990789 -0.5447399 2.5528821 1.8921730 0.3644985 -1.5695863 -1.4828271 -1.5255546 1.8569760 -0.1408785
ENSG00000205238 0.5352818 1.6226752 6.963199 9.677022 0.0030648 0.5014728 ENSG00000205238 SPDYE2 speedy/RINGO cell cycle regulator family member E2 7 102551226 102563538 protein_coding HGNC:33841 4.5433748 5.7064702 5.7419624 6.3931621 5.9596885 6.4205380 6.5347108 7.4670022 7.1053811 7.2974924 6.3255872 5.7354101
ENSG00000239264 0.9125045 1.3682418 8.548598 9.577159 0.0031846 0.5139604 ENSG00000239264 TXNDC5 thioredoxin domain containing 5 6 7881517 7910788 protein_coding HGNC:21073 5.9344914 6.0599583 6.2432239 5.7586038 7.3654176 6.9762465 6.9499431 8.0296820 6.5409019 7.4693729 7.1100616 6.0099222
ENSG00000163082 1.0538527 -0.4800094 5.263301 9.539274 0.0032431 0.5139604 ENSG00000163082 SGPP2 sphingosine-1-phosphate phosphatase 2 2 222424543 222562621 protein_coding HGNC:19953 1.9541025 2.6413516 1.5051587 2.2676437 3.6607836 3.2920929 3.1068232 1.7343025 1.7166938 1.7255248 3.3719159 2.1511954
ENSG00000131669 -0.6279472 0.9560262 4.975060 9.535509 0.0032585 0.5139604 ENSG00000131669 NINJ1 ninjurin 1 9 93121496 93134251 protein_coding HGNC:7824 4.1197016 4.9307277 3.9037187 4.4123536 3.8445953 4.1690807 3.6271190 5.5107593 5.3032582 5.4107363 3.8976073 4.3948002
ENSG00000157181 -1.7276614 1.3939180 3.115654 9.071319 0.0033459 0.5139604 ENSG00000157181 ODR4 odr-4 GPCR localization factor homolog 1 186375838 186421378 protein_coding HGNC:24299 1.3718220 2.4911173 2.5189513 0.3998022 -2.0698637 -0.3977978 -1.5589968 0.3366307 2.6634612 1.9256797 -1.1664110 1.9317855
ENSG00000178078 1.9959017 3.1771130 2.062120 8.077858 0.0034094 0.5139604 ENSG00000178078 STAP2 signal transducing adaptor family member 2 19 4324043 4342786 protein_coding HGNC:30430 -13.2877124 1.5077840 -2.3354735 0.1143617 3.1331803 2.4951479 1.6544264 3.9628433 3.2312223 3.6429217 2.5492182 0.0442038
ENSG00000164941 1.2777231 0.9082054 4.213074 9.428562 0.0034259 0.5139604 ENSG00000164941 INTS8 integrator complex subunit 8 8 94813311 94881746 protein_coding HGNC:26048 2.4322659 2.0592085 2.5969809 2.4523456 2.9897955 2.1278640 3.4292551 2.2234578 3.7387651 3.1715342 2.9440224 2.3983657
ENSG00000196361 -1.1827544 -4.4950525 2.731290 8.858203 0.0034266 0.5139604 ENSG00000196361 ELAVL3 ELAV like RNA binding protein 3 19 11451326 11481046 protein_coding HGNC:3314 0.0075113 -0.7201983 4.0337526 0.2888168 -0.3100210 -0.1452479 -0.0444789 -1.8004451 -3.9334850 -2.5041616 -0.1624636 2.2639819
ENSG00000106546 -0.0852735 -1.6795714 4.435365 9.372289 0.0034849 0.5139604 ENSG00000106546 AHR aryl hydrocarbon receptor 7 16916359 17346152 protein_coding HGNC:348 3.3209769 2.0095697 2.9142922 0.9266341 2.1928068 3.2355523 1.7949286 0.0550665 2.2525228 1.5370629 2.5410838 2.5520969
ENSG00000167194 -1.5974696 -3.4642337 6.339565 9.329618 0.0035201 0.5139604 ENSG00000167194 C16orf92 chromosome 16 open reading frame 92 16 30023198 30027736 protein_coding HGNC:26346 5.8508152 7.8474885 8.4419269 4.6135044 5.8516024 5.9741456 5.8158357 4.0873582 3.6926846 3.9034760 5.8821341 7.3669032
ENSG00000223532 -0.8669204 1.7295439 8.392943 9.318357 0.0035242 0.5139604 ENSG00000223532 HLA-B major histocompatibility complex, class I, B HSCHR6_MHC_COX_CTG1 2750417 2837604 protein_coding HGNC:4932 8.1749199 7.5773357 7.0150189 8.0032282 7.1484330 7.5031525 6.5889410 7.6806503 9.5634826 8.9096180 7.1277406 7.7580559
ENSG00000105127 0.9292669 1.1317474 6.491037 9.275269 0.0035866 0.5174381 ENSG00000105127 AKAP8 A-kinase anchoring protein 8 19 15353385 15379815 protein_coding HGNC:378 2.9437126 3.9320767 3.9891495 3.9219189 4.6838653 5.0911419 4.6154873 4.9364418 4.9269037 4.9316807 4.8125501 3.7547603
ENSG00000171867 -0.5475833 -1.3226216 6.679954 9.212241 0.0036763 0.5226530 ENSG00000171867 PRNP prion protein (Kanno blood group) 20 4686350 4701590 protein_coding HGNC:9449 5.8844539 4.8228052 5.6393247 5.1918105 5.1107890 5.1538890 4.7019150 4.7520858 3.8085427 4.3561135 5.0027453 5.4410273
ENSG00000206353 3.9476144 3.0255689 3.573192 8.425603 0.0037212 0.5226530 ENSG00000206353 SKIC2 SKI2 subunit of superkiller complex HSCHR6_MHC_QBL_CTG1 3215050 3225721 protein_coding HGNC:10898 -13.2877124 -0.8090843 -1.6356338 -13.2877124 1.9583958 2.7039625 2.3438288 2.3493791 -13.2877124 1.3494075 2.3672469 -2.1636344
ENSG00000159307 0.0128445 2.5996387 4.378316 9.215278 0.0037531 0.5226530 ENSG00000159307 SCUBE1 signal peptide, CUB domain and EGF like domain containing 1 22 43197280 43343372 protein_coding HGNC:13441 2.5770640 0.5589680 -1.4344067 -2.9144883 -2.4922409 2.0911088 -1.4236075 3.2945824 2.9665023 3.1398483 0.6814529 0.9897000
ENSG00000105894 -3.4351865 -2.5099604 3.313532 8.552458 0.0037962 0.5226530 ENSG00000105894 PTN pleiotrophin 7 137227341 137343774 protein_coding HGNC:9630 0.7393375 2.8175162 4.7339339 2.3139290 0.9285591 -0.4011718 -1.7732843 -0.2936931 1.3769566 0.7710446 -0.0227035 3.3327769
ENSG00000282725 -2.9035895 -2.3105444 3.216272 8.734605 0.0038175 0.5226530 ENSG00000282725 CORO7 coronin 7 HSCHR16_3_CTG1 56867 128028 protein_coding HGNC:26161 3.4578020 3.5934337 3.3461760 4.2193872 2.8012899 -13.2877124 3.2201310 2.0972963 2.8013795 2.4918703 2.4409033 3.6964270
ENSG00000120093 1.2162365 1.0671698 6.786901 9.037559 0.0039425 0.5306809 ENSG00000120093 HOXB3 homeobox B3 17 48548870 48604912 protein_coding HGNC:5114 3.5191350 3.9816905 3.2680882 4.6094607 5.3652871 5.3842117 5.6260476 5.0830301 5.1895936 5.1372957 5.4634884 3.9379959
ENSG00000110092 -0.4897887 -1.1322686 6.476408 8.977775 0.0040387 0.5306809 ENSG00000110092 CCND1 cyclin D1 11 69641156 69654474 protein_coding HGNC:1582 4.8734788 3.8532995 5.2740465 5.5658455 3.7777528 4.4691258 4.7999711 4.0897546 3.6104205 3.8699040 4.4087356 5.0204644
ENSG00000172156 2.7782768 0.2211919 2.484032 8.216983 0.0040806 0.5306809 ENSG00000172156 CCL11 C-C motif chemokine ligand 11 17 34285742 34288334 protein_coding HGNC:10610 1.0542414 1.4758859 -13.2877124 -13.2877124 2.9629844 3.9333188 3.3470059 1.2409340 0.1030007 0.7813681 3.4703204 0.2804718
ENSG00000230456 3.4002493 -3.9792615 2.014752 7.917826 0.0041111 0.5306809 ENSG00000230456 DDR1 discoidin domain receptor tyrosine kinase 1 HSCHR6_MHC_DBB_CTG1 2137270 2156466 protein_coding HGNC:2730 -1.7213586 -13.2877124 1.3351373 -13.2877124 2.7205608 -1.7121590 1.7968286 -13.2877124 -13.2877124 -13.2877124 1.7895274 -0.5010047
ENSG00000060982 0.2159561 -2.8459952 4.016417 8.835321 0.0041804 0.5306809 ENSG00000060982 BCAT1 branched chain amino acid transaminase 1 12 24810024 24949101 protein_coding HGNC:976 3.3452773 1.7144816 3.7687979 3.4843186 2.2373551 1.5969866 1.1532839 -1.4525620 -1.9075598 -1.6621976 1.7318526 3.2580343
ENSG00000183160 -0.4430935 -2.2207671 4.459441 8.889406 0.0042236 0.5306809 ENSG00000183160 TMEM119 transmembrane protein 119 12 108589851 108598320 protein_coding HGNC:27884 3.5530032 2.2963490 3.7451696 3.1315603 2.9899931 1.8704062 4.2838387 0.3372692 2.2913018 1.6225415 3.3729490 3.2788180
ENSG00000135925 -0.6605472 2.1370536 3.419350 8.788075 0.0042563 0.5306809 ENSG00000135925 WNT10A Wnt family member 10A 2 218880852 218899581 protein_coding HGNC:13829 -13.2877124 1.8751525 1.9020767 1.2295818 -0.4954732 1.0499653 1.1402741 3.4874674 3.6137604 3.5519954 0.7323526 1.2855508
ENSG00000185274 1.4382495 1.5112903 5.438174 8.841252 0.0042841 0.5306809 ENSG00000185274 GALNT17 polypeptide N-acetylgalactosaminyltransferase 17 7 71132144 71713600 protein_coding HGNC:16347 2.8058659 2.5606352 1.6740403 1.5852621 4.1792699 3.9062340 2.5208605 3.8130108 3.4903143 3.6606663 3.6948576 2.2543026
ENSG00000133636 2.4028535 -2.3503023 2.498466 8.064124 0.0043091 0.5306809 ENSG00000133636 NTS neurotensin 12 85874295 85882992 protein_coding HGNC:8038 -13.2877124 1.7380808 1.8523109 -1.2186151 2.1191875 2.4660327 4.2505179 -13.2877124 0.1168531 -0.8830138 3.2682278 0.8829339
ENSG00000167244 1.9601216 -2.1441333 5.321336 8.828556 0.0043145 0.5306809 ENSG00000167244 IGF2 insulin like growth factor 2 11 2129112 2158391 protein_coding HGNC:5466 0.4004341 3.1863083 -0.0111517 1.3030665 4.3198594 4.5680590 1.6589326 1.0153256 -0.0300756 0.5853126 3.9650028 1.7951976
ENSG00000067715 -1.4425793 -1.5782033 3.501353 8.845578 0.0043147 0.5306809 ENSG00000067715 SYT1 synaptotagmin 1 12 78863993 79452008 protein_coding HGNC:11509 2.8693521 1.4987048 1.2027901 1.7701808 2.2100709 0.3188710 1.6409332 0.3109915 -0.7535627 -0.1252447 1.5838414 1.9860531
ENSG00000139514 0.8592398 1.1491500 6.788696 8.794239 0.0043508 0.5306809 ENSG00000139514 SLC7A1 solute carrier family 7 member 1 13 29509414 29595688 protein_coding HGNC:11057 2.9830047 2.9763361 2.8522050 2.7226813 4.1259027 4.1753085 3.1206076 4.2441922 3.8675083 4.0681094 3.8817912 2.8874364
ENSG00000136840 -0.5032231 0.8636157 4.901376 8.763910 0.0044305 0.5333368 ENSG00000136840 ST6GALNAC4 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 9 127907886 127917041 protein_coding HGNC:17846 3.9854092 4.7184420 4.2579444 3.8600890 3.1431411 3.8543598 3.9298137 5.1790448 4.7297382 4.9718125 3.6832597 4.2444883
ENSG00000278823 6.3119476 7.6548383 2.217223 10.248976 0.0044924 0.5333368 ENSG00000278823 BMERB1 bMERB domain containing 1 HSCHR16_1_CTG1 1092272 1283041 protein_coding HGNC:19213 -13.2877124 -13.2877124 -13.2877124 -13.2877124 1.6617756 -13.2877124 1.2586950 2.2111546 1.4784153 1.8908128 0.8893302 -13.2877124
ENSG00000186532 0.4962295 2.0078896 3.464643 8.739211 0.0045052 0.5333368 ENSG00000186532 SMYD4 SET and MYND domain containing 4 17 1779485 1830634 protein_coding HGNC:21067 2.2614869 0.0658756 -0.8470612 3.0647672 1.8739718 2.8439163 1.5278891 3.0188569 1.8074600 2.5367375 2.1941608 1.8840919
ENSG00000115232 0.7133425 -0.8096671 4.644826 8.685092 0.0045805 0.5333368 ENSG00000115232 ITGA4 integrin subunit alpha 4 2 181457202 181538940 protein_coding HGNC:6140 2.8743791 2.1704068 1.9110776 1.9611051 2.4696886 2.2772707 3.6404407 1.9850843 -0.0171645 1.3065632 2.9296196 2.2845793
ENSG00000065911 -0.2577847 0.8799845 5.500479 8.661309 0.0046033 0.5333368 ENSG00000065911 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 74186172 74217565 protein_coding HGNC:7434 2.6908884 3.4455534 3.2926177 3.3834642 2.9481603 3.1178863 3.0898652 3.4742428 3.9750269 3.7462555 3.0538620 3.2321407
ENSG00000255220 1.1915160 -3.8220766 2.303039 8.479620 0.0046624 0.5333368 ENSG00000255220 DDX18P5 11 130295641 130296946 processed_pseudogene HGNC:33968 -0.3011628 0.7991536 2.2419966 1.4931139 3.0232097 2.5403219 2.0594574 -1.9200355 -13.2877124 -2.9194897 2.5941685 1.3358765
ENSG00000182484 -0.4192397 -3.1405345 2.658094 8.178289 0.0046996 0.5333368 ENSG00000182484 WASH6P X 156020826 156025710 protein_coding HGNC:31685 2.4356838 3.0032048 3.4875002 1.8661104 1.6614030 1.6455094 1.4731032 -0.7158792 -3.7637780 -1.5511984 1.5958230 2.8221994
ENSG00000142227 -1.3424309 -0.9787249 4.772638 8.615105 0.0047164 0.5333368 ENSG00000142227 EMP3 epithelial membrane protein 3 (MAM blood group) 19 48321310 48330559 protein_coding HGNC:3335 6.5167830 5.6241548 6.5969985 5.5842303 4.9795830 4.3549652 5.2744397 5.4726872 4.8015878 5.1758128 4.9183605 6.1582082
ENSG00000244257 -8.0873902 0.5215113 3.573284 9.529296 0.0047365 0.5333368 ENSG00000244257 PKD1P1 16 16310341 16334190 transcribed_unprocessed_pseudogene HGNC:30065 -13.2877124 1.1539609 1.0153791 1.1512737 -13.2877124 -13.2877124 -13.2877124 1.0240891 1.4181597 1.2345375 -13.2877124 0.6932911
ENSG00000143340 3.7717958 3.3416632 1.755619 7.863298 0.0047701 0.5333368 ENSG00000143340 FAM163A family with sequence similarity 163 member A 1 179743291 179816198 protein_coding HGNC:28274 -2.2317725 -3.5439214 -13.2877124 -13.2877124 -0.3212538 0.4881715 1.1625987 -0.2634834 0.2827660 0.0353417 0.5661309 -3.7425790
ENSG00000187713 -0.1135844 2.6068505 3.655239 8.530467 0.0048489 0.5372711 ENSG00000187713 TMEM203 transmembrane protein 203 9 137204082 137205648 protein_coding HGNC:28217 2.4343589 1.9999340 0.4345999 -0.0500856 0.9635829 2.2185654 1.4473433 2.0051772 5.1190728 4.2767778 1.6371474 1.5512049
ENSG00000163528 2.3521660 -0.9450375 1.787416 7.332708 0.0049167 0.5372711 ENSG00000163528 CHCHD4 coiled-coil-helix-coiled-coil-helix domain containing 4 3 14112077 14124870 protein_coding HGNC:26467 0.5324387 -13.2877124 -0.1459501 -0.4791564 1.9946843 1.2049051 2.6819435 -2.0857355 -1.0005887 -1.4434538 2.0826695 -0.3828646
ENSG00000273645 -0.6002739 -8.0828702 3.360492 8.920710 0.0049497 0.5372711 ENSG00000273645 KBTBD11 kelch repeat and BTB domain containing 11 HSCHR8_8_CTG1 157254 190312 protein_coding HGNC:29104 1.0362156 0.3390017 1.0169106 0.3113148 1.2807408 0.2038927 -13.2877124 -13.2877124 -13.2877124 -13.2877124 0.2556167 0.7181183
ENSG00000198121 -0.7168839 -2.4670976 4.023425 8.485271 0.0049761 0.5372711 ENSG00000198121 LPAR1 lysophosphatidic acid receptor 1 9 110873263 111038470 protein_coding HGNC:3166 3.8959840 0.9615759 3.2173736 3.3384340 2.2770680 2.6102122 2.1111021 -0.4297877 1.3106467 0.6883585 2.3479553 3.1799271
ENSG00000107105 -3.3898338 -2.0166357 2.223070 7.476537 0.0050623 0.5372711 ENSG00000107105 ELAVL2 ELAV like RNA binding protein 2 9 23690104 23826337 protein_coding HGNC:3313 -0.2843561 1.5128514 1.3358531 1.1809842 -13.2877124 -3.3432492 -1.6506710 -0.7396949 -0.5498735 -0.6416645 -2.8464105 1.0817493
ENSG00000126709 -3.0532196 0.4621675 6.546245 8.429517 0.0050875 0.5372711 ENSG00000126709 IFI6 interferon alpha inducible protein 6 1 27666064 27672212 protein_coding HGNC:4054 6.7649216 6.8999619 7.2060505 7.9885737 3.9509188 4.2481603 4.7646217 3.9354840 8.6913204 7.7437539 4.3610826 7.2987742
ENSG00000225201 -9.6771120 -7.1202959 4.311897 8.939886 0.0051094 0.5372711 ENSG00000225201 HLA-E major histocompatibility complex, class I, E HSCHR6_MHC_MCF_CTG1 1833523 1838261 protein_coding HGNC:4962 3.0165662 5.3436799 0.6557530 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -0.2239651 -1.2237966 -13.2877124 3.6517861
ENSG00000286169 -1.6536411 -1.4970655 3.871740 8.431268 0.0051275 0.5372711 ENSG00000286169 NA NA NA NA NA NA NA 1.6491303 2.9869213 1.8410142 2.2223662 0.6716122 0.2897979 0.4060294 0.6515050 0.2500375 0.4646913 0.4647916 2.2715338
ENSG00000198857 2.1576446 0.9991505 3.328997 8.307867 0.0052152 0.5372711 ENSG00000198857 HSD3BP5 1 119601340 119609250 transcribed_unprocessed_pseudogene HGNC:5223 0.3781365 1.7633946 2.2827559 1.9477570 2.9651068 3.6332528 4.8179247 2.7350696 2.7492848 2.7421947 4.0126637 1.7461442
ENSG00000148773 4.1411956 2.8717052 1.864692 7.629740 0.0052863 0.5372711 ENSG00000148773 MKI67 marker of proliferation Ki-67 10 128096659 128126423 protein_coding HGNC:7107 -13.2877124 -13.2877124 -3.9811494 -4.7233342 -2.1342110 -0.7242086 -0.9135015 -1.7538863 -4.2488757 -2.5182919 -1.1371019 -5.3021835
ENSG00000130707 -0.3311669 1.1549902 6.153462 8.291608 0.0053647 0.5372711 ENSG00000130707 ASS1 argininosuccinate synthase 1 9 130444961 130501274 protein_coding HGNC:758 4.2200809 5.5895701 5.2451732 5.1509275 5.1928725 5.2957688 4.9156257 6.0974921 6.9932696 6.6138161 5.1435110 5.1318253
ENSG00000276886 -2.6899556 -2.5870446 4.290872 8.294713 0.0053714 0.5372711 ENSG00000276886 GREM1 gremlin 1, DAN family BMP antagonist HSCHR15_4_CTG8 4932598 4949251 protein_coding HGNC:2001 3.0661596 0.9912140 2.0376939 3.6722940 1.0539315 -13.2877124 0.5124535 0.7583586 -0.9191868 0.1508014 0.2235276 2.7664887
ENSG00000115271 -2.9701193 -7.6220459 2.572808 7.919253 0.0053820 0.5372711 ENSG00000115271 GCA grancalcin 2 162318840 162371595 protein_coding HGNC:15990 -13.2877124 2.0720965 4.1108016 3.6581202 1.2981574 -13.2877124 1.5997529 -13.2877124 -13.2877124 -13.2877124 0.8718854 3.0919758
ENSG00000185885 -3.2153979 -1.2902141 2.620727 7.471327 0.0054806 0.5372711 ENSG00000185885 IFITM1 interferon induced transmembrane protein 1 11 310041 315272 protein_coding HGNC:5412 4.7452723 3.4459628 3.8770148 3.9463917 2.2042497 -0.7872613 -13.2877124 2.8010442 2.3317127 2.5853801 0.7901857 4.0837958
ENSG00000124194 -0.7197857 1.0659331 3.399741 8.240237 0.0055321 0.5372711 ENSG00000124194 GDAP1L1 ganglioside induced differentiation associated protein 1 like 1 20 44247099 44280947 protein_coding HGNC:4213 1.6167012 1.2494775 2.6281276 1.9437417 0.7152371 0.5389880 1.2516197 2.7336450 2.4341908 2.5916737 0.8681051 1.9517310
ENSG00000115461 -0.3440946 -2.2802282 9.502659 8.198192 0.0055765 0.5372711 ENSG00000115461 IGFBP5 insulin like growth factor binding protein 5 2 216672105 216695549 protein_coding HGNC:5474 6.9579387 5.8913154 8.0459362 5.5989031 6.3705350 6.7711289 6.8488277 4.9294871 4.2850987 4.6429753 6.6782142 6.9554354
ENSG00000224299 3.3112178 3.0643511 2.810768 7.322954 0.0055898 0.5372711 ENSG00000224299 MTATP6P16 2 201550524 201551049 unprocessed_pseudogene HGNC:52061 2.4318572 -13.2877124 -13.2877124 2.9712443 5.7786154 5.2040057 3.1741801 4.1495422 5.0932975 4.6972528 5.0701403 1.7266351
ENSG00000157227 -0.3499503 -1.4960093 8.501829 8.177798 0.0056252 0.5372711 ENSG00000157227 MMP14 matrix metallopeptidase 14 14 22836560 22849041 protein_coding HGNC:7160 8.7053744 7.2502256 8.2216321 7.6390031 8.2898170 7.6362851 7.6695244 6.9158467 6.1210504 6.5725029 7.8978446 8.0600275
ENSG00000166428 -0.1576446 0.7080543 7.265780 8.168691 0.0056476 0.5372711 ENSG00000166428 PLD4 phospholipase D family member 4 14 104924713 104937761 protein_coding HGNC:23792 5.4874368 5.3792278 5.6161975 5.2143918 5.5328461 4.9082426 5.3011944 6.0656408 6.1470666 6.1069280 5.2699600 5.4317944
ENSG00000168874 0.5826446 2.6004981 3.887231 8.200696 0.0056535 0.5372711 ENSG00000168874 ATOH8 atonal bHLH transcription factor 8 2 85751344 85791383 protein_coding HGNC:24126 -3.2598893 0.3330561 -1.9350840 0.8615799 0.4157003 -0.9984398 1.4134560 2.4142863 2.8833764 2.6678135 0.5843956 -0.2164989
ENSG00000111325 0.7150853 -0.4538740 6.732948 8.139272 0.0057198 0.5372711 ENSG00000111325 OGFOD2 2-oxoglutarate and iron dependent oxygenase domain containing 2 12 122974580 122980043 protein_coding HGNC:25823 6.0191137 4.9373515 5.8474802 5.9192992 6.5929843 6.2837616 6.6718406 5.6030428 4.9581748 5.3163438 6.5256790 5.7387095
ENSG00000115325 1.9038516 1.8435781 2.731614 7.854917 0.0057296 0.5372711 ENSG00000115325 DOK1 docking protein 1 2 74549026 74557551 protein_coding HGNC:2990 1.0880059 -0.5306766 0.1066632 0.5253473 1.9598744 2.6416306 2.4500948 2.2614273 2.5954669 2.4380935 2.3780646 0.4152297
ENSG00000116127 -1.5533523 -0.3369005 3.597220 8.147531 0.0057311 0.5372711 ENSG00000116127 ALMS1 ALMS1 centrosome and basal body associated protein 2 73385758 73625166 protein_coding HGNC:428 4.2684268 0.7660311 0.0418051 1.0185188 0.6615772 -1.6057976 -0.3094256 -0.5770738 -0.0020703 -0.2611129 -0.1427738 2.5866281
ENSG00000183426 0.9995875 1.8865266 4.187808 8.155409 0.0057663 0.5372711 ENSG00000183426 NPIPA1 nuclear pore complex interacting protein family member A1 16 14922802 14952060 protein_coding HGNC:7909 0.7604432 1.0847011 0.8036139 2.9398987 2.6861520 2.1317037 3.3285952 2.2888083 4.3073312 3.6255737 2.7980238 1.7261760
ENSG00000153132 -0.9154202 -7.8468824 3.051841 8.484347 0.0058523 0.5386197 ENSG00000153132 CLGN calmegin 4 140388453 140427661 protein_coding HGNC:2060 2.9160938 -0.8563245 2.1502045 1.2577776 0.0457980 1.4545349 1.2666384 -13.2877124 -13.2877124 -13.2877124 1.0423964 1.9001937
ENSG00000174989 1.0338996 0.6027263 5.141332 8.089743 0.0058611 0.5386197 ENSG00000174989 FBXW8 F-box and WD repeat domain containing 8 12 116910950 117032498 protein_coding HGNC:13597 1.7929220 2.1681908 2.0913312 1.8283200 2.8563127 3.3794470 3.3043901 2.7490678 2.7447805 2.7469256 3.1978412 1.9793299
ENSG00000162981 -2.2723692 -2.1291087 2.598383 7.650263 0.0059172 0.5400730 ENSG00000162981 LRATD1 LRAT domain containing 1 2 14632700 14650814 protein_coding HGNC:20743 -0.4671804 0.0142839 1.3068210 0.6321630 -2.0473802 -0.9297756 -2.1482825 -1.6503992 -1.5804482 -1.6149998 -1.5959048 0.5253603
ENSG00000213995 1.0323194 1.0440025 4.495407 8.031560 0.0060439 0.5469301 ENSG00000213995 NAXD NAD(P)HX dehydratase 13 110615545 110639996 protein_coding HGNC:25576 2.0919601 2.0151536 2.7094726 2.2390127 3.4966269 3.6249922 3.1173526 3.2710726 3.4160448 3.3453789 3.4286270 2.2903557
ENSG00000272670 1.8272329 3.6870417 2.850757 7.327093 0.0060738 0.5469301 ENSG00000272670 DOC2B double C2 domain beta HSCHR17_1_CTG1 82789 120568 protein_coding HGNC:2986 -13.2877124 -0.5757250 -1.0360229 -2.7795512 -13.2877124 -3.0981596 0.9847446 2.5152414 0.5533929 1.8448809 -0.5174332 -1.6166623
ENSG00000120129 -0.4606345 0.6218394 5.853472 7.980226 0.0061299 0.5483027 ENSG00000120129 DUSP1 dual specificity phosphatase 1 5 172768096 172771195 protein_coding HGNC:3064 4.7913006 4.2313018 4.5085005 4.6282234 4.3111723 4.3389016 3.9610596 5.0470521 5.3139277 5.1866519 4.2136599 4.5540387
ENSG00000122783 -0.3216866 1.7337195 6.397365 7.927586 0.0062697 0.5570907 ENSG00000122783 CYREN cell cycle regulator of NHEJ 7 135092363 135170795 protein_coding HGNC:22432 5.8935846 4.6357275 4.1962949 6.5871268 5.1863497 4.6546591 6.0358283 7.6912957 7.2691254 7.4955980 5.4060989 5.6350639
ENSG00000281900 0.2852229 -8.3000437 3.902583 8.267255 0.0063424 0.5593817 ENSG00000281900 KLHL5P1 HSCHR22_1_CTG7 163262 165936 processed_pseudogene HGNC:56977 2.7578735 3.3825789 -13.2877124 3.8913937 3.7909802 3.4615448 2.9820360 -13.2877124 -13.2877124 -13.2877124 3.4488624 3.0014953
ENSG00000103888 -0.1287963 1.2392526 4.229058 7.872498 0.0065015 0.5593817 ENSG00000103888 CEMIP cell migration inducing hyaluronidase 1 15 80779343 80951776 protein_coding HGNC:29213 2.9108894 2.9589445 3.7822173 3.2826603 2.5088751 1.7801887 3.7416322 3.2015006 2.6469483 2.9507073 2.9070831 3.2774651
ENSG00000064205 -2.8685572 -4.3726243 3.710801 7.497684 0.0065068 0.5593817 ENSG00000064205 CCN5 cellular communication network factor 5 20 44714844 44728509 protein_coding HGNC:12770 5.3744710 -2.3287247 3.5286054 1.8792086 0.3142870 -0.3020803 0.9658678 -1.1872012 -0.7763204 -0.9671826 0.4178185 3.8304003
ENSG00000152049 -0.4907763 -3.5285367 4.588616 7.786008 0.0065747 0.5593817 ENSG00000152049 KCNE4 potassium voltage-gated channel subfamily E regulatory subunit 4 2 223052190 223198399 protein_coding HGNC:6244 4.4882856 0.9602225 1.6524374 3.4377591 2.4473872 2.4489311 2.9917424 -0.1361218 -1.0489703 -0.5215200 2.6529628 3.2618946
ENSG00000168140 0.4957420 1.3128497 6.340351 7.808569 0.0066015 0.5593817 ENSG00000168140 VASN vasorin 16 4371848 4383538 protein_coding HGNC:18517 4.0384187 3.9736650 3.8440748 4.0563182 4.0665144 4.9871198 4.6110800 5.8158716 4.5959001 5.3311713 4.6030613 3.9804878
ENSG00000163840 -1.6317844 0.0871460 4.180782 7.799149 0.0066920 0.5593817 ENSG00000163840 DTX3L deltex E3 ubiquitin ligase 3L 3 122564338 122575203 protein_coding HGNC:30323 1.6165200 1.7892806 1.5588603 1.0983980 -0.0002308 -1.2201503 1.6459091 1.3233274 1.9368249 1.6624443 0.6036052 1.5373145
ENSG00000138161 0.1048698 2.3166313 3.478085 7.773815 0.0067270 0.5593817 ENSG00000138161 CUZD1 CUB and zona pellucida like domains 1 10 122832158 122846175 protein_coding HGNC:17937 1.4895881 2.4687175 1.0563671 -1.3968553 -0.3819982 2.4255901 1.0686302 3.4214639 3.7306883 3.5843451 1.4572092 1.4333665
ENSG00000198108 0.2281801 -2.3076672 4.104989 7.762610 0.0067477 0.5593817 ENSG00000198108 CHSY3 chondroitin sulfate synthase 3 5 129904465 130186634 protein_coding HGNC:24293 2.7003063 0.7128678 2.2049420 1.5493769 2.4064749 2.0465560 2.4283844 0.3821393 -2.0327133 -0.3699040 2.3041083 1.9704786
ENSG00000136960 -0.1887162 -2.6366862 6.907648 7.754885 0.0067590 0.5593817 ENSG00000136960 ENPP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 8 119557086 119673453 protein_coding HGNC:3357 6.4658854 3.6619388 6.0863053 5.2411649 5.6054766 5.9783241 4.7249055 3.6217326 1.9339446 3.0117427 5.5254184 5.6922316
ENSG00000138771 1.4678320 -0.1744853 4.104861 7.779515 0.0067780 0.5593817 ENSG00000138771 SHROOM3 shroom family member 3 4 76435229 76783253 protein_coding HGNC:30422 3.2855031 0.1454688 0.8938623 0.3201473 2.3324785 2.7770205 0.5931692 0.5478249 0.2087208 0.3882127 2.1591564 1.8035755
ENSG00000184058 -5.0189108 -1.1756132 2.866165 7.434795 0.0067887 0.5593817 ENSG00000184058 TBX1 T-box transcription factor 1 22 19756703 19783593 protein_coding HGNC:11592 2.6998763 3.1837880 -0.7697355 1.1900724 -1.5033638 -1.8335211 -13.2877124 1.7855413 0.0124700 1.1558007 -2.2437535 2.2057466
ENSG00000111358 -1.4253807 -6.3784012 1.718656 7.526601 0.0067958 0.5593817 ENSG00000111358 GTF2H3 general transcription factor IIH subunit 3 12 123633739 123662604 protein_coding HGNC:4657 3.1168255 1.3015736 1.9421470 1.0753019 2.0157480 -1.5617242 1.4401331 -13.2877124 -13.2877124 -13.2877124 1.2420653 2.0950535
ENSG00000088930 -0.4650165 -1.2297874 4.855927 7.717612 0.0068952 0.5632039 ENSG00000088930 XRN2 5’-3’ exoribonuclease 2 20 21303331 21389825 protein_coding HGNC:12836 3.0878577 3.0251770 2.9721208 3.2270306 2.4291858 2.7337463 3.0062833 1.8446885 1.8961118 1.8706295 2.7421945 3.0812305
ENSG00000181333 -7.4737324 -1.4482006 2.536125 8.443966 0.0069546 0.5632039 ENSG00000181333 HEPHL1 hephaestin like 1 11 94021354 94114208 protein_coding HGNC:30477 -0.8528027 -0.7870024 1.9319806 -0.2716789 -13.2877124 -13.2877124 -13.2877124 -0.6200553 -1.5324576 -1.0052986 -13.2877124 0.5304194
ENSG00000085117 -0.2662758 1.3667669 5.215825 7.673936 0.0070270 0.5632039 ENSG00000085117 CD82 CD82 molecule 11 44564427 44620363 protein_coding HGNC:6210 4.2258897 4.5837379 3.6867431 4.0516440 4.0630159 4.7317019 4.3473892 5.7061602 5.6353995 5.6712135 4.4068999 4.1729651
ENSG00000145819 -0.0118569 1.5655213 4.261982 7.691794 0.0070410 0.5632039 ENSG00000145819 ARHGAP26 Rho GTPase activating protein 26 5 142770377 143229011 protein_coding HGNC:17073 1.7146623 2.9278113 0.4501001 1.9413452 2.4672028 1.7574317 0.8702653 4.1726519 4.5046871 4.3482007 1.8397798 2.0088562
ENSG00000113083 -0.2856976 -1.2573430 5.530297 7.660545 0.0070521 0.5632039 ENSG00000113083 LOX lysyl oxidase 5 122063195 122078413 protein_coding HGNC:6664 3.9319778 2.8331888 3.4763376 4.1512684 3.5757846 2.8712286 3.5829729 2.5180977 1.8351221 2.2166535 3.3796321 3.6805494
ENSG00000169071 0.3176487 -1.9344958 3.742487 7.648259 0.0071141 0.5635069 ENSG00000169071 ROR2 receptor tyrosine kinase like orphan receptor 2 9 91563091 91950228 protein_coding HGNC:10257 1.6988337 1.4198641 0.5877596 1.6867358 1.6565312 2.1715777 1.5555978 0.0855593 -1.2215021 -0.4247506 1.8206608 1.4119919
ENSG00000186994 0.8607001 -0.9450879 3.513874 7.664364 0.0071399 0.5635069 ENSG00000186994 KANK3 KN motif and ankyrin repeat domains 3 19 8322584 8343262 protein_coding HGNC:24796 2.0711150 1.1719677 1.2557044 1.8264138 2.1279092 2.6282447 2.4278244 0.8131101 0.0837498 0.4940387 2.4091088 1.6310670
ENSG00000148341 0.5797894 1.3760901 4.522438 7.634612 0.0071856 0.5637960 ENSG00000148341 SH3GLB2 SH3 domain containing GRB2 like, endophilin B2 9 129007036 129028331 protein_coding HGNC:10834 2.0881820 3.1133111 2.2803577 2.5744673 4.0683938 3.3462966 3.1754815 4.2468183 4.6832958 4.4815011 3.5842351 2.5680489
ENSG00000236353 2.3896927 -5.1446425 2.251736 7.393004 0.0073659 0.5666778 ENSG00000236353 PBX2 PBX homeobox 2 HSCHR6_MHC_MCF_CTG1 3526760 3532202 protein_coding HGNC:8633 1.0070239 1.2627735 -13.2877124 1.0144196 -13.2877124 2.2347941 2.8372417 -13.2877124 -13.2877124 -13.2877124 1.9822883 0.6847101
ENSG00000284626 5.6627008 7.0272404 1.718214 8.467498 0.0074065 0.5666778 ENSG00000284626 15 90234200 90265462 protein_coding -13.2877124 -13.2877124 -13.2877124 -13.2877124 0.6772160 -1.5404341 -2.7559313 0.3177255 0.9860381 0.6902392 -0.5208564 -13.2877124
ENSG00000168477 1.2421822 3.0253597 4.338109 7.569967 0.0074162 0.5666778 ENSG00000168477 TNXB tenascin XB 6 32041153 32115334 protein_coding HGNC:11976 -0.9290969 -13.2877124 -2.0955120 1.0927757 1.0459454 -0.6638309 1.5035167 2.5003771 1.6540725 2.1384118 0.8826430 -0.4678766
ENSG00000120885 1.2729240 2.9034457 8.477550 7.542020 0.0074227 0.5666778 ENSG00000120885 CLU clusterin 8 27596917 27614700 protein_coding HGNC:2095 5.2806434 7.6297861 7.3328299 6.2688756 9.1745225 7.4243549 6.0269502 10.6997899 8.1442305 9.9264196 8.0853710 6.8925598
ENSG00000116132 -0.2354759 -1.1758957 6.891664 7.524387 0.0074819 0.5666778 ENSG00000116132 PRRX1 paired related homeobox 1 1 170662728 170739421 protein_coding HGNC:9142 6.0077724 5.1924534 5.9695439 5.5491122 5.5268206 5.4325861 5.9436542 4.0842232 4.8706118 4.5303480 5.6519265 5.7169725
ENSG00000099994 -0.9475672 1.1018035 3.564876 7.539386 0.0074875 0.5666778 ENSG00000099994 SUSD2 sushi domain containing 2 22 24181487 24189106 protein_coding HGNC:30667 1.8786249 1.7099496 0.1253919 0.7951394 0.3898718 0.5925408 0.5783871 2.6440503 2.3013450 2.4828498 0.5231795 1.2890654
ENSG00000182463 -0.0395205 -1.7342619 4.053687 7.536275 0.0075180 0.5666778 ENSG00000182463 TSHZ2 teashirt zinc finger homeobox 2 20 52972358 53495330 protein_coding HGNC:13010 1.9170116 0.1087038 0.3067942 -0.3697101 0.6876457 1.6286840 1.8567603 0.4563825 -1.5460432 -0.2221742 1.4724696 0.7793760
ENSG00000148600 -3.4847304 -3.7704684 1.893208 6.646002 0.0076842 0.5730870 ENSG00000148600 CDHR1 cadherin related family member 1 10 84194537 84219621 protein_coding HGNC:14550 -1.6335552 0.4013334 1.4929945 0.4876006 -13.2877124 -13.2877124 -1.5602343 -13.2877124 -2.5767166 -3.5758562 -3.1443457 0.5508657
ENSG00000174804 0.8467582 -0.3748851 6.296850 7.449599 0.0077390 0.5730870 ENSG00000174804 FZD4 frizzled class receptor 4 11 86945679 86955395 protein_coding HGNC:4042 3.0447957 1.9197188 3.3144048 2.3787707 3.3534083 3.8903389 3.8149436 2.4973186 2.2530498 2.3803479 3.7049948 2.7647236
ENSG00000149600 -0.0296234 -1.7710309 3.543483 7.464984 0.0077541 0.5730870 ENSG00000149600 COMMD7 COMM domain containing 7 20 32702699 32743467 protein_coding HGNC:16223 2.7834889 2.8468258 3.2423424 2.2077064 2.9828662 3.0428042 2.1968720 0.7511166 0.8372998 0.7948517 2.7887767 2.8156783
ENSG00000241738 0.3466591 1.6514403 3.417989 7.471086 0.0077739 0.5730870 ENSG00000241738 ZNF90P1 3 101357292 101359242 processed_pseudogene HGNC:12888 0.7391966 0.8040056 1.9103013 2.0811115 2.1756661 1.9986050 1.4896257 3.0287161 3.1990210 3.1163801 1.9161246 1.5116446
ENSG00000176595 5.7089764 7.8073620 2.152631 8.336455 0.0078233 0.5735833 ENSG00000176595 KBTBD11 kelch repeat and BTB domain containing 11 8 1973677 2006936 protein_coding HGNC:29104 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 0.0136438 0.2653361 0.5392690 0.4087945 -1.5710331 -13.2877124
ENSG00000117133 1.2562230 0.5743687 4.212904 7.433114 0.0078807 0.5746490 ENSG00000117133 RPF1 ribosome production factor 1 homolog 1 84479259 84498352 protein_coding HGNC:30350 1.6677264 2.2760070 2.4433695 2.6966358 3.9390250 3.6099536 3.4921558 3.0878652 2.6831238 2.8996418 3.6930185 2.3177729
ENSG00000233615 3.9108124 0.7378548 1.168468 6.895699 0.0081355 0.5884943 ENSG00000233615 HNRNPA1P42 1 240919653 240920609 processed_pseudogene HGNC:48771 -1.2957619 -1.6115702 -13.2877124 -13.2877124 2.4600296 0.5419905 2.7737362 -1.3326110 -1.2488722 -1.2901342 2.2013230 -2.4446495
ENSG00000276358 -0.6713265 2.2822227 2.918111 7.079487 0.0081838 0.5884943 ENSG00000276358 PLEKHM1 pleckstrin homology and RUN domain containing M1 HSCHR17_2_CTG5 126405 180904 protein_coding HGNC:29017 3.7249306 2.0068456 1.5016694 0.7211705 3.9579764 -13.2877124 -1.9910886 3.5393239 0.7244075 2.7310259 2.3961883 2.4410728
ENSG00000242110 0.6443532 -2.7466661 2.307401 6.882848 0.0082439 0.5884943 ENSG00000242110 AMACR alpha-methylacyl-CoA racemase 5 33986165 34008104 protein_coding HGNC:451 0.3332806 1.6593739 1.5986834 1.7905010 2.0398799 2.1899118 0.9400547 -1.9337937 -1.3860422 -1.6340768 1.8201435 1.4471410
ENSG00000135473 0.7413400 -0.4665344 4.619879 7.306240 0.0082992 0.5884943 ENSG00000135473 PAN2 poly(A) specific ribonuclease subunit PAN2 12 56316223 56334053 protein_coding HGNC:20074 2.8658778 1.5308698 4.4103383 3.0131340 4.3655344 3.7795463 3.6575666 1.4343341 1.1426970 1.2958723 3.9685770 3.3043839
ENSG00000100814 -1.2922471 -2.3866970 2.555359 7.070550 0.0083603 0.5884943 ENSG00000100814 CCNB1IP1 cyclin B1 interacting protein 1 14 20311368 20333312 protein_coding HGNC:19437 2.9730855 2.4917433 2.2965059 1.6458746 1.2876720 1.1600502 1.4087863 0.4451164 1.3543173 0.9701851 1.2890725 2.4275222
ENSG00000230341 0.5829501 -8.3045222 4.042281 7.577137 0.0084180 0.5884943 ENSG00000230341 PPP1R18 protein phosphatase 1 regulatory subunit 18 HSCHR6_MHC_APD_CTG1 2005896 2017402 protein_coding HGNC:29413 1.3503434 2.2350058 1.0821371 1.9633513 2.8501209 2.7480073 -13.2877124 -13.2877124 -13.2877124 -13.2877124 2.2150153 1.7305543
ENSG00000150991 0.2108766 1.4590739 12.489862 7.247929 0.0084747 0.5884943 ENSG00000150991 UBC ubiquitin C 12 124911604 124917368 protein_coding HGNC:12468 10.2352385 10.5555261 9.2145549 9.9623885 10.0631843 10.3107676 10.8312878 10.9278933 11.9616603 11.5354548 10.4380829 10.0708174
ENSG00000071575 -1.3347322 -1.4383612 4.442150 7.246612 0.0085573 0.5884943 ENSG00000071575 TRIB2 tribbles pseudokinase 2 2 12716910 12742734 protein_coding HGNC:30809 4.3849395 2.1699724 3.3051929 1.5638932 0.6216304 2.7329182 2.4490508 1.6183223 0.8214270 1.2742116 2.1855675 3.2567921
ENSG00000169075 0.0156712 1.0692688 5.011863 7.225551 0.0085944 0.5884943 ENSG00000169075 BRD7P3 6 118501430 118502906 processed_pseudogene HGNC:24171 3.4175281 3.9547172 3.9436232 4.3004905 4.0668448 4.2601860 3.8725285 4.8376744 5.1843618 5.0214069 4.0751860 3.9374037
ENSG00000275079 -5.4223671 -1.1823953 3.663118 6.675194 0.0086267 0.5884943 ENSG00000275079 LPCAT1 lysophosphatidylcholine acyltransferase 1 HSCHR5_3_CTG1 8170 53293 protein_coding HGNC:25718 2.9993959 0.9075898 3.3968385 2.6994897 -13.2877124 -13.2877124 -1.6225719 -13.2877124 1.7716131 0.7716553 -3.2066458 2.7496006
ENSG00000137124 0.5728062 -2.0592410 3.276617 7.145527 0.0086958 0.5884943 ENSG00000137124 ALDH1B1 aldehyde dehydrogenase 1 family member B1 9 38392702 38398661 protein_coding HGNC:407 1.7484338 0.0914561 1.4880471 1.3707345 2.2000501 1.8721381 1.7771461 -2.3264002 1.3571652 0.4652923 1.9613981 1.2952076
ENSG00000069702 -0.6224464 -1.6063350 4.444606 7.197499 0.0087390 0.5884943 ENSG00000069702 TGFBR3 transforming growth factor beta receptor 3 1 91680343 91906335 protein_coding HGNC:11774 3.3014627 2.3152662 2.0014445 3.4725891 1.6486587 1.6790765 2.0320857 -0.0033900 1.8292517 1.1862406 1.7973737 2.9040455
ENSG00000186153 2.9629213 2.2039184 2.982529 6.776429 0.0087950 0.5884943 ENSG00000186153 WWOX WW domain containing oxidoreductase 16 78099400 79212667 protein_coding HGNC:12799 -1.2388339 1.8820964 -13.2877124 1.0896358 4.3575246 4.4632187 2.6559114 1.9427202 2.9009054 2.4999413 4.0256159 0.6411113
ENSG00000184640 -0.1610854 -0.8881888 7.193330 7.159427 0.0088257 0.5884943 ENSG00000184640 SEPTIN9 septin 9 17 77280569 77500596 protein_coding HGNC:7323 6.0925383 5.9049617 5.6021455 5.6680377 5.8864682 5.8416447 5.8115393 4.6962536 4.5974220 4.6476841 5.8468796 5.8302282
ENSG00000233076 0.6882284 2.9667323 1.496304 6.060016 0.0088316 0.5884943 ENSG00000233076 DDAH2 DDAH family member 2, ADMA-independent HSCHR6_MHC_MANN_CTG1 3032085 3035664 protein_coding HGNC:2716 -1.3011770 -1.5798960 -0.3858367 -13.2877124 -13.2877124 -0.2374930 1.3759925 2.2945549 1.6051956 1.9906638 0.1990309 -1.4095312
ENSG00000140937 -0.2942599 -1.5852983 6.566138 7.139637 0.0089084 0.5884943 ENSG00000140937 CDH11 cadherin 11 16 64943753 65126112 protein_coding HGNC:1750 7.4490000 4.8816712 6.2176202 6.2180805 6.2038309 6.0041133 5.4640444 4.0959707 4.0540981 4.0751860 5.9231159 6.4638351
ENSG00000172548 1.9521692 0.3151388 2.666956 6.979942 0.0089115 0.5884943 ENSG00000172548 NIPAL4 NIPA like domain containing 4 5 157460213 157474722 protein_coding HGNC:28018 -0.0970404 -0.7319226 0.2827600 -1.6706628 2.2397768 1.2346914 2.0357625 -0.2355197 0.3374748 0.0792395 1.8974914 -0.3828524
ENSG00000116095 -1.1580188 0.3743697 4.251520 7.155983 0.0089329 0.5884943 ENSG00000116095 PLEKHA3 pleckstrin homology domain containing A3 2 178480457 178516463 protein_coding HGNC:14338 -0.0751415 0.4811780 0.3125525 -0.2610938 2.4691194 -0.5278928 0.6183561 0.3940257 0.7073304 0.5591658 1.3721626 0.1445320
ENSG00000038427 -0.2370914 -1.8523390 9.410725 7.126759 0.0089584 0.5884943 ENSG00000038427 VCAN versican 5 83471618 83582303 protein_coding HGNC:2464 7.1721094 6.1334552 7.1373699 6.0701876 6.6494630 6.3694099 6.7097658 5.3919531 3.9689731 4.8492227 6.5836626 6.7224608
ENSG00000143624 -5.4634770 2.9857313 2.646556 7.375555 0.0090489 0.5884943 ENSG00000143624 INTS3 integrator complex subunit 3 1 153728050 153774808 protein_coding HGNC:26153 -13.2877124 -13.2877124 -13.2877124 0.7808174 -13.2877124 -13.2877124 -13.2877124 1.2986953 1.6157713 1.4659269 -13.2877124 -1.2189307
ENSG00000018510 0.2853358 -1.6173226 3.830401 7.112462 0.0091092 0.5884943 ENSG00000018510 AGPS alkylglycerone phosphate synthase 2 177392746 177567024 protein_coding HGNC:327 2.3371031 2.3585701 0.6529747 1.0982754 3.1736732 2.1516143 2.8896363 1.6676238 1.6832383 1.6754524 2.7989142 1.7964815
ENSG00000203685 0.7817217 -1.1749436 3.612009 7.114037 0.0091249 0.5884943 ENSG00000203685 STUM stum, mechanosensory transduction mediator homolog 1 226548764 226609230 protein_coding HGNC:30491 0.2186547 -0.2931397 0.1139911 0.0163779 0.2465017 0.7368179 1.5081233 -0.7653344 -1.6775272 -1.1505051 0.9252959 0.0262359
ENSG00000146221 -2.0009615 -3.2222598 4.860779 7.080989 0.0092278 0.5884943 ENSG00000146221 TCTE1 t-complex-associated-testis-expressed 1 6 44278734 44297698 protein_coding HGNC:11693 1.9219732 4.7184688 3.8441204 2.9257612 -13.2877124 2.5791558 2.2496689 0.6430194 0.4304159 0.5406304 1.8388489 3.7025597
ENSG00000163975 2.1719731 2.8203988 2.323652 6.402199 0.0093310 0.5884943 ENSG00000163975 MELTF melanotransferrin 3 196980590 197029835 protein_coding HGNC:7037 -3.7152206 -0.8061299 -3.3904871 -1.5514119 0.4220230 -2.4544269 1.3839730 1.0166967 1.2272359 1.1258032 0.4619183 -1.8828529
ENSG00000278032 -1.5466896 0.4910113 6.181801 7.036996 0.0093507 0.5884943 ENSG00000278032 LY6E lymphocyte antigen 6 family member E HSCHR8_4_CTG7 8270 14120 protein_coding HGNC:6727 6.6983016 5.8733357 5.5375429 5.9878701 2.4663666 5.3435701 4.7701582 6.2402354 6.8696453 6.5889960 4.6131067 6.0894700
ENSG00000039560 -0.3610194 -2.2090734 4.007515 7.044207 0.0093708 0.5884943 ENSG00000039560 RAI14 retinoic acid induced 14 5 34656328 34832612 protein_coding HGNC:14873 2.9466141 3.3937657 1.3121389 2.3410362 1.8786355 4.0377046 3.0563831 0.3040799 -0.5525435 -0.0615651 3.2438613 2.6876027
ENSG00000139352 -0.1694198 1.2864210 10.647784 7.028755 0.0093732 0.5884943 ENSG00000139352 ASCL1 achaete-scute family bHLH transcription factor 1 12 102957674 102960513 protein_coding HGNC:738 8.3856973 9.3874892 8.6193121 7.9063225 8.3007718 8.9638218 8.6369101 9.4493564 10.3951113 9.9983831 8.6590929 8.6771685
ENSG00000124875 0.1124585 -3.7757284 4.013267 6.857677 0.0093809 0.5884943 ENSG00000124875 CXCL6 C-X-C motif chemokine ligand 6 4 73836640 73849064 protein_coding HGNC:10643 3.3477265 2.4641868 5.1264853 2.3051791 3.8384480 1.2521322 5.1094313 2.2496377 -2.1228997 1.3176572 4.0933523 3.7963143
ENSG00000137819 1.1056821 -1.0642149 3.995521 7.046593 0.0094079 0.5884943 ENSG00000137819 PAQR5 progestin and adipoQ receptor family member 5 15 69298912 69407780 protein_coding HGNC:29645 1.4122992 0.0996803 0.0598841 1.2799389 2.7567161 1.9612447 1.0164478 -0.2028010 -0.1914782 -0.1971285 2.0790050 0.8487613
ENSG00000166233 -0.6105329 -0.9550025 5.037369 7.005639 0.0095005 0.5884943 ENSG00000166233 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 15 72474330 72602987 protein_coding HGNC:689 5.2740137 2.9183103 4.3056341 1.5711054 3.3150561 3.2228344 3.9165395 2.5574915 3.0651845 2.8335562 3.5189266 4.1085174
ENSG00000254827 -0.5537890 -2.3475117 3.716772 6.998194 0.0095349 0.5884943 ENSG00000254827 SLC22A18AS SLC22A18 antisense RNA 11 2887344 2903814 lncRNA HGNC:10965 3.0137995 2.7354149 4.0366282 2.6591306 2.6723961 2.9045866 2.7024838 1.6589043 -1.2549193 0.8386622 2.7635616 3.2274460
ENSG00000130649 -5.3370105 -6.0485205 4.979058 6.433218 0.0095581 0.5884943 ENSG00000130649 CYP2E1 cytochrome P450 family 2 subfamily E member 1 10 133520406 133561220 protein_coding HGNC:2631 -13.2877124 2.3469915 -13.2877124 4.8516050 -0.2063671 -13.2877124 0.2873080 -0.8308010 1.9601365 1.1548444 -0.5234089 3.0857620
ENSG00000120328 -0.5963445 -2.9680738 2.610206 6.709387 0.0096138 0.5884943 ENSG00000120328 PCDHB12 protocadherin beta 12 5 141208697 141212571 protein_coding HGNC:8683 1.6580433 0.7689203 1.5095347 -0.0927694 -1.4984274 0.9107004 0.1373146 -1.1464035 -2.6157822 -1.7015904 0.1521847 1.1118292
ENSG00000165169 -1.5310891 -1.0589031 3.281950 6.975379 0.0096189 0.5884943 ENSG00000165169 DYNLT3 dynein light chain Tctex-type 3 X 37836757 37847571 protein_coding HGNC:11694 2.2553361 2.5565003 2.7081510 1.8325368 1.0139939 0.5153421 1.3279506 2.1501697 1.0102363 1.6899790 0.9901765 2.3752972
ENSG00000262246 1.5092221 2.9608211 4.186458 6.978850 0.0096524 0.5884943 ENSG00000262246 CORO7 coronin 7 16 4354542 4425705 protein_coding HGNC:26161 0.3661381 -13.2877124 2.0574811 -13.2877124 2.4194957 1.8943948 1.5320371 3.4846736 3.1732309 3.3373402 1.9951154 0.4467030
ENSG00000092820 0.8887046 1.6025700 4.623000 6.973511 0.0096921 0.5884943 ENSG00000092820 EZR ezrin 6 158765741 158819368 protein_coding HGNC:12691 1.7295336 2.5706640 1.2489786 1.8557709 2.4729114 3.0942626 3.0755167 3.0784375 3.8358304 3.5062759 2.9082809 1.9310415
ENSG00000204033 -3.7450467 -4.0269528 2.061701 6.229095 0.0097542 0.5884943 ENSG00000204033 LRIT2 leucine rich repeat, Ig-like and transmembrane domains 2 10 84220571 84225544 protein_coding HGNC:23443 -13.2877124 1.0073986 2.0886742 0.2559913 -13.2877124 -1.4768034 -13.2877124 -2.3537783 -13.2877124 -3.3530411 -3.0609630 0.8988099
ENSG00000079785 -0.8602744 -0.9242179 4.538177 6.937061 0.0098418 0.5884943 ENSG00000079785 DDX1 DEAD-box helicase 1 2 15591178 15634346 protein_coding HGNC:2734 3.1982323 3.9969556 4.6980634 4.0612157 2.3312592 3.8733252 2.3067572 2.3420153 2.5751470 2.4632850 3.0376858 4.0831140
ENSG00000146242 0.4051478 -1.6302624 3.846496 6.943328 0.0098433 0.5884943 ENSG00000146242 TPBG trophoblast glycoprotein 6 82363206 82367420 protein_coding HGNC:12004 2.3375358 0.4546265 2.1617029 2.2199045 1.7737521 2.0338268 2.8819312 0.1096080 0.0410705 0.0757462 2.3108906 1.9595725
ENSG00000257150 2.0862882 -2.9184351 2.061882 6.527021 0.0099590 0.5884943 ENSG00000257150 PGAM1P5 12 95672305 95673068 transcribed_processed_pseudogene HGNC:42452 -13.2877124 -1.4705768 1.2816383 -2.1645674 1.6536948 1.8395021 1.6521629 -2.7734224 -13.2877124 -3.7724363 1.7178382 -0.4077769
ENSG00000102109 -1.7204383 -3.0597223 3.650040 6.861503 0.0099715 0.5884943 ENSG00000102109 PCSK1N proprotein convertase subtilisin/kexin type 1 inhibitor X 48831096 48835610 protein_coding HGNC:17301 2.4753648 5.4427523 4.6349366 2.5956476 2.6145410 2.9923773 2.5130998 1.7022657 0.6165214 1.2592092 2.7217793 4.3209508
ENSG00000172819 -0.7150388 -2.0528443 3.700240 6.913255 0.0099847 0.5884943 ENSG00000172819 RARG retinoic acid receptor gamma 12 53210567 53232980 protein_coding HGNC:9866 3.1758779 2.0386069 1.9351078 3.3048502 1.7212178 1.6426872 2.3409798 0.4760809 0.8768945 0.6903626 1.9368524 2.7469624
ENSG00000013583 -2.0788656 0.0234541 2.997251 6.710027 0.0099923 0.5884943 ENSG00000013583 HEBP1 heme binding protein 1 12 12974870 13000265 protein_coding HGNC:17176 2.6556506 4.5422099 3.2386276 3.4362242 2.0061450 2.8555245 -0.5959907 1.9990637 4.7010029 3.9072541 1.9899056 3.6399256
outPath = "output/day10/DEG"
Test = "day10.SCN2A.vs.WT"
qlf = glmQLFTest(fit, coef=2)
sig.gene.summary(qlf)
##        q0.005 q0.01 q0.05  q0.2 p0.01
## Down        0     0     0     0    78
## NotSig  13417 13417 13417 13417 13273
## Up          0     0     0     0    66
deg = attach_annotations_by_p(qlf, 0.01)
maxAveTPM = data.frame(maxAveTPM = apply(deg[,c("SCN2A", "WT")], 1, max))
deg = cbind(deg, maxAveTPM)
# deg %>%
#   kbl() %>%
#   kable_styling(bootstrap_options = c("striped", "hover", "condensed")) %>%
#   scroll_box(width = "100%", height = "300px")

write.table(deg, file=paste(outPath,ExperimentName,Test,"txt", sep="."), quote=FALSE, row.names=TRUE, col.names=TRUE, sep="\t")

#MvsA plot
ggplot(data = as.data.frame(topTags(qlf, n=NULL)) %>% arrange(desc(PValue)), aes(x=logCPM, y=logFC)) +
  geom_point(aes(color=PValue<0.01)) +
  scale_color_manual(values = xgfs_normal12[c(13,2)]) +
  theme_minimal()

#Volcano plot
ggplot(data = as.data.frame(topTags(qlf, n=NULL)) %>% arrange(desc(PValue)), aes(x=logFC, y=-log10(PValue))) + 
  geom_point(aes(color=PValue<0.01)) +
  scale_color_manual(values = xgfs_normal12[c(13,2)]) +
  theme_minimal()

SCN2AUp = row.names(deg[deg[,"logFC"] > 0 & deg[,"maxAveTPM"] > log2(0.1),])
SCN2ADown = row.names(deg[deg[,"logFC"] < 0 & deg[,"maxAveTPM"] > log2(0.1),])
Test = "day10.CHD2.vs.WT"
qlf = glmQLFTest(fit, coef=3)
sig.gene.summary(qlf)
##        q0.005 q0.01 q0.05  q0.2 p0.01
## Down        0     0     0     7   164
## NotSig  13417 13417 13417 13408 13146
## Up          0     0     0     2   107
deg = attach_annotations_by_p(qlf, 0.01)
maxAveTPM = data.frame(maxAveTPM = apply(deg[,c("CHD2", "WT")], 1, max))
deg = cbind(deg, maxAveTPM)
# deg %>%
#   kbl() %>%
#   kable_styling(bootstrap_options = c("striped", "hover", "condensed")) %>%
#   scroll_box(width = "100%", height = "300px")

write.table(deg, file=paste(outPath,ExperimentName,Test,"txt", sep="."), quote=FALSE, row.names=TRUE, col.names=TRUE, sep="\t")

#MvsA plot
ggplot(data = as.data.frame(topTags(qlf, n=NULL)) %>% arrange(desc(PValue)), aes(x=logCPM, y=logFC)) +
  geom_point(aes(color=PValue<0.01)) +
  scale_color_manual(values = xgfs_normal12[c(13,2)]) +
  theme_minimal()

#Volcano plot
ggplot(data = as.data.frame(topTags(qlf, n=NULL)) %>% arrange(desc(PValue)), aes(x=logFC, y=-log10(PValue))) + 
  geom_point(aes(color=PValue<0.01)) +
  scale_color_manual(values = xgfs_normal12[c(13,2)]) +
  theme_minimal()

CHD2Up = row.names(deg[deg[,"logFC"] > 0 & deg[,"maxAveTPM"] > log2(0.1),])
CHD2Down = row.names(deg[deg[,"logFC"] < 0 & deg[,"maxAveTPM"] > log2(0.1),])
Test = "day10"
venn.diagram(list(CHD2 = CHD2Up, SCN2A = SCN2AUp), filename = paste(outPath,ExperimentName,Test,"up.png", sep="."), imagetype = "png", main = paste(Test, "up regulated", sep = " "), col = xgfs_normal12[1:2])
## [1] 1
venn.diagram(list(CHD2 = CHD2Down, SCN2A = SCN2ADown), filename = paste(outPath,ExperimentName,Test,"down.png", sep="."), imagetype = "png", main = paste(Test, "down regulated", sep = " "), col = xgfs_normal12[1:2])
## [1] 1
SCN2AUp.d10 = SCN2AUp
SCN2ADown.d10 = SCN2ADown
CHD2Up.d10 = CHD2Up
CHD2Down.d10 = CHD2Down
Venn diagram up regulated
Venn diagram up regulated
Venn diagram down regulated
Venn diagram down regulated

Note:

1c. Day 22 of transdifferentiation

Test the differences between WT, SCN2A and CHD2 at 22 days of transdifferentiation.

fit = test_a_diff_state(diffState = "day_22", countTable = counts.current)
qlf = glmQLFTest(fit, coef=2:3)
sig.gene.summary(qlf)
##        q0.005 q0.01 q0.05  q0.2 p0.01
## NotSig  10620 10620 10619 10617 10398
## Sig         0     0     1     3   222
d22.genes.expressed = rownames(qlf$table)
attach_annotations_by_p(qlf, 0.01) %>%
  kbl() %>%
  kable_styling(bootstrap_options = c("striped", "hover", "condensed")) %>%
  scroll_box(width = "100%", height = "300px")
logFC.fSCN2A logFC.fCHD2 logCPM F PValue FDR ensembl_gene_id hgnc_symbol entrezgene_description chromosome_name start_position end_position gene_biotype hgnc_id CON_1_d22 CON_2_d22 CON_3_d22 CON_4_d22 SCN2A_1_d22 SCN2A_2_d22 SCN2A_3_d22 CHD2_1_d22 CHD2_2_d22 CHD2 SCN2A WT
ENSG00000115461 1.2154621 -1.8009508 9.854720 46.875451 0.0000017 0.0177274 ENSG00000115461 IGFBP5 insulin like growth factor binding protein 5 2 216672105 216695549 protein_coding HGNC:5474 6.7393814 6.4262847 6.6384098 6.8382508 7.2831498 8.0650522 8.0668223 4.9227770 4.7471416 4.8376305 7.8490410 6.6685106
ENSG00000078018 -1.3681381 -2.3362726 5.580023 31.597306 0.0000141 0.0746568 ENSG00000078018 MAP2 microtubule associated protein 2 2 209424047 209734147 protein_coding HGNC:6839 3.8906787 2.9556599 4.1916258 4.3579641 2.5426790 1.1316731 3.4181590 2.0545328 2.3787374 2.2257228 2.6405899 3.9394360
ENSG00000159167 -2.7883869 -3.0433089 4.577133 26.156255 0.0000302 0.1069264 ENSG00000159167 STC1 stanniocalcin 1 8 23841929 23854806 protein_coding HGNC:11373 3.2154733 2.4458946 2.9473699 4.0597613 0.5654675 0.8295021 -0.1398079 0.6730000 -0.5578792 0.1850318 0.4732082 3.2901081
ENSG00000168280 -1.0994778 -2.5395448 6.223597 21.434091 0.0000960 0.2281226 ENSG00000168280 KIF5C kinesin family member 5C 2 148875227 149026759 protein_coding HGNC:6325 4.0712771 3.5658391 4.4124459 3.4232485 3.3610034 1.9651548 2.6938576 1.5036372 0.9857933 1.2678258 2.7830731 3.9230284
ENSG00000168237 -0.0847893 -3.1458674 7.835647 20.671764 0.0001133 0.2281226 ENSG00000168237 GLYCTK glycerate kinase 3 52287089 52295257 protein_coding HGNC:24247 6.6620413 6.3007557 7.9045898 7.8440020 7.1450860 7.2659996 7.7817415 3.7054372 4.1278118 3.9320271 7.4249114 7.3431489
ENSG00000228299 9.6140612 8.1125093 7.350232 19.372934 0.0001289 0.2281226 ENSG00000228299 HLA-C major histocompatibility complex, class I, C HSCHR6_MHC_DBB_CTG1 2526549 2529920 protein_coding HGNC:4933 -0.1744309 -13.2877124 -13.2877124 -13.2877124 7.2452907 8.0898783 8.9249143 8.4055414 -13.2877124 7.4055418 8.2450971 -2.1739422
ENSG00000115648 0.9240299 2.5183624 5.132168 18.690796 0.0001890 0.2293797 ENSG00000115648 MLPH melanophilin 2 237485428 237555322 protein_coding HGNC:29643 4.9991954 3.4565139 2.8892152 2.8823265 5.1409111 3.3592836 5.0391195 5.1624346 5.9724117 5.6235353 4.7082816 3.8515492
ENSG00000053918 3.2971008 -1.5166940 3.230305 14.807817 0.0001897 0.2293797 ENSG00000053918 KCNQ1 potassium voltage-gated channel subfamily Q member 1 11 2444654 2849105 protein_coding HGNC:6294 -0.5545890 -13.2877124 0.8324599 0.8526741 2.9156391 2.4274007 3.1530209 -1.6352841 -13.2877124 -2.6348360 2.8626176 0.0933962
ENSG00000157087 -0.3644653 -1.9549395 6.846559 18.416113 0.0001950 0.2293797 ENSG00000157087 ATP2B2 ATPase plasma membrane Ca2+ transporting 2 3 10324023 10708007 protein_coding HGNC:815 4.3423509 3.8809880 4.8226802 4.6654509 4.9633393 3.8597498 4.4717238 2.6143916 3.0566014 2.8523736 4.5004434 4.4707689
ENSG00000120885 1.0273489 3.5229411 9.022523 18.007641 0.0002160 0.2293797 ENSG00000120885 CLU clusterin 8 27596917 27614700 protein_coding HGNC:2095 5.0519783 7.8031300 7.7372493 6.6230351 8.2595315 7.3569004 7.4159242 11.5159320 9.5834901 10.8516272 7.7395612 7.1509181
ENSG00000145423 2.5906621 -1.4595409 6.595934 17.620824 0.0002417 0.2303368 ENSG00000145423 SFRP2 secreted frizzled related protein 2 4 153780591 153789083 protein_coding HGNC:10777 1.5544361 3.2694131 4.3346798 5.4979958 6.6153372 5.8548595 7.4741362 3.3306617 1.7283951 2.7413926 6.7975332 4.2844641
ENSG00000286140 0.4956782 -6.5192024 3.907978 18.772994 0.0002603 0.2303368 ENSG00000286140 DERPC DERPC proline and glycine rich nuclear protein 16 69118010 69132588 protein_coding HGNC:54084 1.5096082 2.3181826 2.1629560 2.7893854 2.5885506 3.1048975 2.5143139 -13.2877124 -13.2877124 -13.2877124 2.7606853 2.2649888
ENSG00000254245 -1.1678632 1.6349004 5.278198 16.646629 0.0003153 0.2443655 ENSG00000254245 PCDHGA3 protocadherin gamma subfamily A, 3 5 141343829 141512975 protein_coding HGNC:8701 1.2392104 2.7642920 2.8836513 2.7971037 1.0871756 0.7963976 1.5495933 4.6210747 3.0932779 4.0506174 1.1781690 2.5536942
ENSG00000080573 1.1414736 -0.1581598 7.140399 16.496666 0.0003221 0.2443655 ENSG00000080573 COL5A3 collagen type V alpha 3 chain 19 9959561 10010504 protein_coding HGNC:14864 3.7698707 4.0858953 3.7245103 3.6761382 5.1070779 4.6573297 5.0921053 3.8839023 3.3807937 3.6541686 4.9667009 3.8233428
ENSG00000204469 -6.6745690 -8.9709163 5.221519 15.225860 0.0003884 0.2750102 ENSG00000204469 PRRC2A proline rich coiled-coil 2A 6 31620715 31637771 protein_coding HGNC:13918 4.5172418 1.8884183 -13.2877124 3.5887977 -1.5316690 2.4126260 -13.2877124 -13.2877124 -13.2877124 -13.2877124 0.9184885 3.2717915
ENSG00000197467 -2.6202177 1.5028971 3.361000 13.250424 0.0004394 0.2851028 ENSG00000197467 COL13A1 collagen type XIII alpha 1 chain 10 69801880 69964275 protein_coding HGNC:2190 1.3820170 2.0137499 1.1656277 2.1118553 -0.9006240 -13.2877124 -0.4973720 2.6554086 3.7415324 3.2983543 -1.2698009 1.7236027
ENSG00000205238 -0.6588671 0.8706292 7.649536 15.254509 0.0004564 0.2851028 ENSG00000205238 SPDYE2 speedy/RINGO cell cycle regulator family member E2 7 102551226 102563538 protein_coding HGNC:33841 6.9073837 7.3250263 7.2613138 6.9818674 6.7947191 6.1093909 6.2217217 8.0214949 7.7638554 7.8984187 6.4076743 7.1298064
ENSG00000110076 -0.6362181 -4.0853868 4.475812 14.120380 0.0004985 0.2940902 ENSG00000110076 NRXN2 neurexin 2 11 64606174 64723197 protein_coding HGNC:8009 4.8897311 1.5277029 2.1843777 2.9116599 0.4651648 2.4794468 1.2285041 -2.6802434 2.6624102 1.6975319 1.6323534 3.4789296
ENSG00000005020 -2.7332569 -0.6569980 3.945762 13.317089 0.0005909 0.3187422 ENSG00000005020 SKAP2 src kinase associated phosphoprotein 2 7 26667068 26995239 protein_coding HGNC:15687 4.0150812 2.3796559 4.5114092 3.1291843 2.4240051 -0.1586580 3.4127226 2.7428362 4.0446672 3.5358647 2.4950138 3.7259792
ENSG00000183688 0.7962448 1.7178956 5.317373 14.383100 0.0006003 0.3187422 ENSG00000183688 RFLNB refilin B 17 439978 445939 protein_coding HGNC:28705 2.7973606 1.8863375 2.3141820 2.5081053 3.4765245 2.7401776 3.2859545 4.2358330 3.9822173 4.1145910 3.1998744 2.4134980
ENSG00000122783 0.3252861 2.1095878 6.629929 13.726128 0.0007233 0.3333062 ENSG00000122783 CYREN cell cycle regulator of NHEJ 7 135092363 135170795 protein_coding HGNC:22432 6.0384450 4.4427601 4.9441931 6.3857980 6.3147225 5.0817779 6.5776380 8.1519752 7.5734805 7.8915314 6.1222693 5.6573733
ENSG00000233151 4.0196391 6.5852888 4.532378 11.676727 0.0007500 0.3333062 ENSG00000233151 CYP21A2 cytochrome P450 family 21 subfamily A member 2 HSCHR6_MHC_COX_CTG1 3476620 3479992 protein_coding HGNC:2600 -13.2877124 -13.2877124 -13.2877124 0.2051185 2.6383635 -13.2877124 3.4533437 -13.2877124 6.1168701 5.1168722 2.5176982 -1.7945059
ENSG00000166106 1.2195178 -0.9392369 5.016466 13.459585 0.0007994 0.3333062 ENSG00000166106 ADAMTS15 ADAM metallopeptidase with thrombospondin type 1 motif 15 11 130448645 130476645 protein_coding HGNC:16305 2.1075911 0.7778014 1.7117112 2.2984269 3.4064263 2.5612907 3.0042375 0.9569034 0.7285806 0.8472545 3.0314585 1.8297408
ENSG00000170577 5.0094360 0.5934652 2.851396 12.401449 0.0008659 0.3333062 ENSG00000170577 SIX2 SIX homeobox 2 2 45005182 45009452 protein_coding HGNC:10888 -13.2877124 -0.8984252 -13.2877124 -13.2877124 2.8518600 2.0545766 2.8857385 -1.0073563 -13.2877124 -2.0070663 2.6449609 -2.8976187
ENSG00000107551 0.5758707 2.2845082 4.199452 13.140351 0.0008741 0.3333062 ENSG00000107551 RASSF4 Ras association domain family member 4 10 44959407 44995891 protein_coding HGNC:20793 1.4489966 0.0154419 0.4422928 0.5038362 2.3554372 1.2318256 1.1630124 3.0316713 3.2699446 3.1557214 1.6938219 0.7043594
ENSG00000104435 -0.7578305 -2.0730237 5.936616 13.084474 0.0008886 0.3333062 ENSG00000104435 STMN2 stathmin 2 8 79611117 79666158 protein_coding HGNC:10577 4.9364823 5.1329160 4.9262776 5.7312044 4.0454245 4.1792688 4.9002866 3.6234135 2.3267694 3.1161097 4.4260799 5.2214575
ENSG00000127241 0.9020888 -1.3699098 8.236080 13.060429 0.0008901 0.3333062 ENSG00000127241 MASP1 MBL associated serine protease 1 3 187217282 187291980 protein_coding HGNC:6901 6.6556987 6.4278299 6.2170083 7.6425060 7.3854554 7.2336384 7.3710187 6.4209114 5.4290593 6.0085949 7.3316419 6.8489954
ENSG00000147488 -0.5716525 -2.4595768 5.647996 12.969826 0.0009259 0.3333062 ENSG00000147488 ST18 ST18 C2H2C-type zinc finger transcription factor 8 52110838 52460959 protein_coding HGNC:18695 4.1267364 3.7506849 5.1966399 4.2959017 4.5708094 3.6927304 5.1337380 1.3362857 1.3748603 1.3557019 4.5810432 4.4470027
ENSG00000165973 1.6861953 3.6981998 3.640160 11.322697 0.0009605 0.3333062 ENSG00000165973 NELL1 neural EGFL like 1 11 20669551 21575686 protein_coding HGNC:7750 -1.4413679 -1.0380004 0.0708921 0.4339721 -13.2877124 -0.0216096 3.5648224 2.8706754 3.5128021 3.2271731 2.0952354 -0.2966627
ENSG00000167614 1.0607496 -4.1068808 3.951697 12.037345 0.0009972 0.3333062 ENSG00000167614 TTYH1 tweety family member 1 19 54415219 54436904 protein_coding HGNC:13476 0.6688589 1.1415348 0.4347323 2.7093762 2.4925572 2.0782375 3.3369266 -13.2877124 0.7668436 -0.2330716 2.7337274 1.5469585
ENSG00000174804 1.4158827 0.4083915 6.077212 12.629228 0.0010279 0.3333062 ENSG00000174804 FZD4 frizzled class receptor 4 11 86945679 86955395 protein_coding HGNC:4042 2.5438225 1.6009315 2.0121145 2.6147902 3.2958636 3.5405964 3.9960637 2.6525914 2.5988654 2.6259783 3.6405419 2.2497320
ENSG00000204033 -2.5751957 -6.8568055 3.502770 12.186484 0.0010600 0.3333062 ENSG00000204033 LRIT2 leucine rich repeat, Ig-like and transmembrane domains 2 10 84220571 84225544 protein_coding HGNC:23443 -1.4720049 2.7270088 2.6640547 3.0865470 0.1891427 -0.8112598 -0.3634028 -13.2877124 -13.2877124 -13.2877124 -0.2703825 2.4471838
ENSG00000157005 0.9725873 -1.4842086 8.848434 12.492251 0.0010714 0.3333062 ENSG00000157005 SST somatostatin 3 187668912 187670394 protein_coding HGNC:11329 9.1151141 9.5829116 9.6651642 11.1733260 10.8000239 11.4581409 10.6472385 8.8498269 8.0641648 8.5098296 11.0131259 10.1172461
ENSG00000168802 1.0902952 4.2974119 3.369461 9.991134 0.0010770 0.3333062 ENSG00000168802 CHTF8 chromosome transmission fidelity factor 8 16 69118010 69132588 protein_coding HGNC:24353 -13.2877124 2.8537077 -13.2877124 -13.2877124 1.9266242 1.1461267 -13.2877124 3.2977210 3.2086593 3.2538774 1.0035864 0.8537674
ENSG00000149212 1.0188947 -0.3744701 6.349448 12.345297 0.0011272 0.3333062 ENSG00000149212 SESN3 sestrin 3 11 95165513 95232541 protein_coding HGNC:23060 2.4744207 2.4956547 1.8799222 2.8952359 3.5797290 5.1677911 3.4033315 2.6017227 1.6958544 2.2187499 4.2850029 2.4801030
ENSG00000112365 1.9168884 2.8529782 3.448981 11.206075 0.0011299 0.3333062 ENSG00000112365 ZBTB24 zinc finger and BTB domain containing 24 6 109460632 109483239 protein_coding HGNC:21143 -2.3735067 -0.7650720 -1.2459643 -1.4665563 0.8635603 0.6032852 0.3094510 0.9988519 1.8958583 1.5159753 0.6097332 -1.3539565
ENSG00000176788 -0.2016400 -1.5218051 6.759060 11.972125 0.0012773 0.3520452 ENSG00000176788 BASP1 brain abundant membrane attached signal protein 1 5 17065598 17276843 protein_coding HGNC:957 5.7277589 6.1997812 6.3846615 6.4812136 5.5910908 6.0635494 6.2520743 4.3311374 4.8690820 4.6250390 5.9947702 6.2259003
ENSG00000086570 -0.7487769 0.4181345 7.231664 11.957446 0.0012833 0.3520452 ENSG00000086570 FAT2 FAT atypical cadherin 2 5 151504092 151591331 protein_coding HGNC:3596 3.2703054 3.0854811 3.0188944 3.4243590 2.2667781 2.4491852 2.5778923 3.6076440 3.5879964 3.5978536 2.4368918 3.2085995
ENSG00000018189 -0.0985046 -1.7409245 5.658187 11.953743 0.0012928 0.3520452 ENSG00000018189 RUFY3 RUN and FYVE domain containing 3 4 70704204 70808619 protein_coding HGNC:30285 3.9388501 3.3857636 3.7553100 5.4862944 4.6295425 5.9232733 3.4767297 1.7915465 3.2493341 2.6972316 5.0085570 4.3943651
ENSG00000258388 -9.6601098 -9.6601098 5.861661 14.340726 0.0014022 0.3722803 ENSG00000258388 PPT2-EGFL8 6 32153845 32171978 protein_coding HGNC:48343 5.9722763 4.4317228 -13.2877124 4.1945557 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 4.6819187
ENSG00000178814 2.8424301 1.4495904 3.787627 11.011780 0.0014546 0.3767717 ENSG00000178814 OPLAH 5-oxoprolinase, ATP-hydrolysing 8 144051266 144063965 protein_coding HGNC:8149 1.9644851 -1.8616678 -0.1717145 0.3442274 3.8685074 3.9547719 1.7996241 1.8351629 -0.6177267 1.0771794 3.4851548 0.6633783
ENSG00000144893 2.9119905 -0.3538035 6.189553 11.511148 0.0015155 0.3771598 ENSG00000144893 MED12L mediator complex subunit 12L 3 151085286 151437072 protein_coding HGNC:16050 2.6738045 0.1089272 1.5590307 -0.1465280 2.4265004 3.1389696 4.7213450 1.7539895 -3.6853290 0.7868615 3.7571769 1.4994638
ENSG00000138792 4.4486123 3.4354732 3.291573 9.990191 0.0015271 0.3771598 ENSG00000138792 ENPEP glutamyl aminopeptidase 4 110365733 110565285 protein_coding HGNC:3355 -1.7024540 -13.2877124 -13.2877124 -13.2877124 1.1702898 1.2733279 0.7153443 0.5312592 -0.6959867 0.0443780 1.0725927 -3.7010461
ENSG00000180611 2.2076921 0.1880024 3.552860 10.854820 0.0016713 0.3950894 ENSG00000180611 MB21D2 Mab-21 domain containing 2 3 192796815 192917856 protein_coding HGNC:30438 0.5369759 -0.4333855 0.2585141 0.7740748 2.7009390 2.8983005 2.1052982 0.7787855 0.2235869 0.5277300 2.6056991 0.3498714
ENSG00000102109 -0.5194391 -1.9857637 5.493957 11.217829 0.0016741 0.3950894 ENSG00000102109 PCSK1N proprotein convertase subtilisin/kexin type 1 inhibitor X 48831096 48835610 protein_coding HGNC:17301 5.9212418 5.6615316 6.5710235 5.9760811 5.5273355 5.5146339 5.8091323 4.5562152 3.2944753 4.0590965 5.6235716 6.0727532
ENSG00000152932 -1.3204969 -2.2028048 4.690510 10.927621 0.0018733 0.4287718 ENSG00000152932 RAB3C RAB3C, member RAS oncogene family 5 58582221 58859394 protein_coding HGNC:30269 1.3740457 4.0116798 4.7933908 5.3490858 0.6790445 -0.4321294 2.8636374 -0.1744455 -0.5934046 -0.3687700 1.6811834 4.4464616
ENSG00000239264 0.9432881 1.1014428 7.589479 10.725931 0.0019821 0.4287718 ENSG00000239264 TXNDC5 thioredoxin domain containing 5 6 7881517 7910788 protein_coding HGNC:21073 5.2103216 5.2582689 5.3872643 5.4473387 6.7062434 5.7085592 6.1815991 6.8040277 6.1744205 6.5233008 6.2561154 5.3289578
ENSG00000248329 3.8146640 2.3359904 3.626628 9.242559 0.0020186 0.4287718 ENSG00000248329 APELA apelin receptor early endogenous ligand 4 164877178 164898965 protein_coding HGNC:48925 -0.0929540 -1.0597806 -13.2877124 -0.1728151 3.6165221 3.0307164 3.8296993 4.6963858 -13.2877124 3.6963913 3.5300737 -0.7955362
ENSG00000087074 0.1502397 -1.4313951 5.407235 10.687758 0.0020248 0.4287718 ENSG00000087074 PPP1R15A protein phosphatase 1 regulatory subunit 15A 19 48872212 48876059 protein_coding HGNC:14375 4.0502677 4.0572694 4.6062940 4.3191646 4.5376719 3.7976805 4.5541640 2.9525045 2.8474059 2.9009120 4.3368918 4.2767656
ENSG00000126603 2.8002668 4.8903187 3.499261 8.986899 0.0020566 0.4287718 ENSG00000126603 GLIS2 GLIS family zinc finger 2 16 4314761 4339597 protein_coding HGNC:29450 -0.3908824 -13.2877124 -13.2877124 -13.2877124 1.8302574 -13.2877124 -13.2877124 2.8440457 2.5136471 2.6882841 0.2453760 -2.3903154
ENSG00000127995 1.6873341 -1.9207012 3.213817 9.669144 0.0021320 0.4287718 ENSG00000127995 CASD1 CAS1 domain containing 1 7 94509219 94557019 protein_coding HGNC:16014 0.6095857 -0.2421541 0.2166808 0.8646137 1.2181848 2.1261578 1.8347104 -1.9367511 -2.1675134 -2.0475233 1.7738655 0.4206743
ENSG00000253953 2.2163484 0.7611827 3.921109 10.417983 0.0021391 0.4287718 ENSG00000253953 PCDHGB4 protocadherin gamma subfamily B, 4 5 141387698 141512975 protein_coding HGNC:8711 0.0717489 -0.4335803 0.8614052 -0.6215971 2.6116766 1.3472206 2.5730822 0.6083305 0.9862507 0.8096301 2.2836397 0.0902329
ENSG00000148082 1.3926045 -0.7621476 5.025644 10.486639 0.0021991 0.4287718 ENSG00000148082 SHC3 SHC adaptor protein 3 9 89005771 89178818 protein_coding HGNC:18181 -0.0679524 0.5905599 0.2075918 1.9872212 2.3172030 1.9383118 2.4992275 2.4221843 -0.3835538 1.6150316 2.2700352 0.9220661
ENSG00000204520 -7.5707900 -7.5707900 3.964003 12.576477 0.0022303 0.4287718 ENSG00000204520 MICA MHC class I polypeptide-related sequence A 6 31399784 31415315 protein_coding HGNC:7090 4.0112845 4.1973296 -13.2877124 4.1000571 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 3.6898571
ENSG00000106070 1.4434900 -0.1033140 4.396150 10.439823 0.0022605 0.4287718 ENSG00000106070 GRB10 growth factor receptor bound protein 10 7 50590063 50793462 protein_coding HGNC:4564 3.0895668 1.9730466 1.2294218 1.9288312 2.7610176 3.8764508 2.4673470 1.7505379 0.8764686 1.3787103 3.1697020 2.2164986
ENSG00000274944 -1.1317878 -0.0753593 5.742414 10.377368 0.0022687 0.4287718 ENSG00000274944 1 38864501 38881617 protein_coding 4.2160504 3.8685449 4.3290617 4.9233905 2.9830323 3.1140665 2.9704863 4.0487147 4.0713635 4.0600835 3.0240042 4.3860446
ENSG00000242265 0.9107498 -2.7437944 6.452623 10.245421 0.0023830 0.4287718 ENSG00000242265 PEG10 paternally expressed 10 7 94656325 94669695 protein_coding HGNC:14005 3.6743091 4.0973941 3.7151969 5.9802768 5.0884646 4.6587239 6.2638236 -0.3406216 2.5728618 1.7526600 5.5038216 4.7299436
ENSG00000077942 1.1745016 -0.7214730 8.986809 10.213985 0.0023968 0.4287718 ENSG00000077942 FBLN1 fibulin 1 22 45502238 45601135 protein_coding HGNC:3600 6.8146830 7.2713206 7.3152248 7.4175935 8.2491994 8.0676406 8.6975668 7.2025119 5.1578459 6.5156167 8.3630088 7.2222701
ENSG00000110092 -0.9467891 -1.5242152 6.829618 10.138180 0.0024689 0.4287718 ENSG00000110092 CCND1 cyclin D1 11 69641156 69654474 protein_coding HGNC:1582 4.1133444 6.1373005 7.0058541 6.7629950 5.2924917 4.6671134 4.5346707 3.0080413 4.2873939 3.7851142 4.8707952 6.3435274
ENSG00000148600 -3.8589711 -3.3488040 3.787410 8.828474 0.0025336 0.4287718 ENSG00000148600 CDHR1 cadherin related family member 1 10 84194537 84219621 protein_coding HGNC:14550 -13.2877124 1.7456336 2.6290024 2.1532739 -13.2877124 -1.1247201 -0.1459070 -1.8659368 -0.3150000 -0.8913805 -1.1387043 1.8061036
ENSG00000229698 -4.9637719 -7.6966188 4.092576 9.320796 0.0025816 0.4287718 ENSG00000229698 HLA-F major histocompatibility complex, class I, F HSCHR6_MHC_SSTO_CTG1 1029074 1044770 protein_coding HGNC:4963 6.0894158 -13.2877124 5.8315335 3.6022307 -13.2877124 0.8091625 3.1156735 -13.2877124 -13.2877124 -13.2877124 1.7963403 5.0999592
ENSG00000124225 1.9116165 0.1199893 4.646295 10.048367 0.0026110 0.4287718 ENSG00000124225 PMEPA1 prostate transmembrane protein, androgen induced 1 20 57648392 57711536 protein_coding HGNC:14107 4.2629126 0.7638076 -0.9385722 3.6421898 4.4066973 4.9657224 5.0539404 3.7297281 5.0093581 4.5069972 4.8358921 3.0833693
ENSG00000184347 1.5369432 -0.1537926 7.116849 9.925170 0.0026772 0.4287718 ENSG00000184347 SLIT3 slit guidance ligand 3 5 168661740 169301139 protein_coding HGNC:11087 3.8305179 4.0075769 1.9137741 3.9831096 4.8285083 5.6115702 5.6075453 3.9726308 2.9554119 3.5518765 5.3930537 3.6407528
ENSG00000179051 -0.2659859 -2.3153316 4.386277 9.908050 0.0026944 0.4287718 ENSG00000179051 RCC2 regulator of chromosome condensation 2 1 17406760 17439677 protein_coding HGNC:30297 2.5630817 2.6854632 1.8204094 3.0144560 2.8298045 2.4663309 2.5720519 0.7171445 0.3744697 0.5559575 2.6309250 2.5822511
ENSG00000225859 2.1751185 0.6686480 5.453506 9.905518 0.0027305 0.4287718 ENSG00000225859 DDX39B DExD-box helicase 39B HSCHR6_MHC_MANN_CTG1 2835292 2851631 protein_coding HGNC:13917 2.7015832 2.7320028 5.0183083 2.6303915 5.7460551 4.4403019 5.3688545 3.5509483 4.9153308 4.3887551 5.2817364 3.6934747
ENSG00000121898 -1.1962186 3.0942561 3.605255 8.559309 0.0028106 0.4287718 ENSG00000121898 CPXM2 carboxypeptidase X, M14 family member 2 10 123706207 123940267 protein_coding HGNC:26977 -13.2877124 1.5012939 -13.2877124 0.5420847 -13.2877124 1.1032479 -13.2877124 2.4913485 3.7864174 3.2795694 -0.4815803 0.1000492
ENSG00000182108 -1.2319528 -0.1356314 6.563218 9.745620 0.0028733 0.4287718 ENSG00000182108 DEXI Dexi homolog 16 10928891 10942468 protein_coding HGNC:13267 3.9600051 4.9673928 5.1199148 5.2017904 3.4832360 3.9204332 4.1104058 4.7352293 5.2750828 5.0302615 3.8611941 4.8878279
ENSG00000164692 1.5532203 0.0013873 12.456120 9.709311 0.0029083 0.4287718 ENSG00000164692 COL1A2 collagen type I alpha 2 chain 7 94394895 94431227 protein_coding HGNC:2198 10.1259203 9.2642410 8.3903293 9.8505353 10.4972851 10.4693268 11.4974508 9.9110441 8.7649111 9.4489214 10.9054669 9.5464444
ENSG00000139289 -0.9508426 -1.0289026 8.059266 9.684013 0.0029376 0.4287718 ENSG00000139289 PHLDA1 pleckstrin homology like domain family A member 1 12 76025447 76031776 protein_coding HGNC:8933 5.6614926 4.6981308 5.1789294 5.4583924 4.5110533 3.9930714 4.4375943 4.5200291 3.8986078 4.2425217 4.3313778 5.2924792
ENSG00000134207 -1.3740526 -6.7330023 3.549973 10.046641 0.0029461 0.4287718 ENSG00000134207 SYT6 synaptotagmin 6 1 114089291 114153880 protein_coding HGNC:18638 0.6237049 3.1698330 1.9942825 3.5890113 2.0581138 0.2426025 -0.3301387 -13.2877124 -13.2877124 -13.2877124 1.0339811 2.7310831
ENSG00000136997 0.9547388 -2.1263818 4.739893 9.583090 0.0030477 0.4287718 ENSG00000136997 MYC MYC proto-oncogene, bHLH transcription factor 8 127735434 127742951 protein_coding HGNC:7553 5.4268589 0.9957812 2.9123377 5.5504534 4.6007509 3.8367477 5.3676615 2.4208316 1.1712831 1.9273113 4.7340874 4.6352568
ENSG00000077279 -1.0816719 -3.8822139 5.019413 9.405814 0.0031414 0.4287718 ENSG00000077279 DCX doublecortin X 111293779 111412429 protein_coding HGNC:2714 2.7783198 2.8259677 1.8965776 3.2427665 1.7313219 1.4074838 1.9974864 -13.2877124 -0.8656529 -1.8653900 1.7320660 2.7623907
ENSG00000185624 1.1165770 0.6098968 9.261682 9.501514 0.0031552 0.4287718 ENSG00000185624 P4HB prolyl 4-hydroxylase subunit beta 17 81843159 81860856 protein_coding HGNC:8548 7.6393985 7.6547997 7.4526223 8.4525255 8.4241572 8.5848563 8.5923619 8.5277992 7.7152658 8.1779950 8.5358508 7.8554852
ENSG00000233935 0.5466009 2.9004409 6.096533 9.390896 0.0033263 0.4287718 ENSG00000233935 HSCHR6_MHC_COX_CTG1 1206841 1207831 unprocessed_pseudogene -13.2877124 5.3575830 6.0996609 3.8688770 6.0667744 5.3582563 4.7148631 7.3742830 8.0888554 7.7753655 5.4844936 4.9563852
ENSG00000165609 -1.0789321 0.5131832 5.288029 9.394920 0.0033263 0.4287718 ENSG00000165609 NUDT5 nudix hydrolase 5 10 12165330 12195891 protein_coding HGNC:8052 4.2921533 4.2719533 5.7312933 3.9830484 3.0693084 3.8097975 3.1277057 4.6978888 4.7742901 4.7365951 3.3765627 4.7528513
ENSG00000187244 -1.1331906 1.0136080 5.447649 9.358999 0.0033748 0.4287718 ENSG00000187244 BCAM basal cell adhesion molecule (Lutheran blood group) 19 44809071 44821421 protein_coding HGNC:6722 3.2852544 4.2477372 5.4384757 3.0943866 3.9449615 3.4640556 1.7943289 5.1186728 5.0066593 5.0637529 3.3173501 4.3336541
ENSG00000138756 -1.0983250 -0.7037116 5.353587 9.328570 0.0034071 0.4287718 ENSG00000138756 BMP2K BMP2 inducible kinase 4 78776342 78916365 protein_coding HGNC:18041 2.9762696 2.7785255 3.7415815 3.5349537 1.9410740 2.0436087 4.9993843 2.4191079 2.0173219 2.2321570 3.7351256 3.3110024
ENSG00000284753 -0.7183719 -1.1263574 7.522214 9.304538 0.0034127 0.4287718 ENSG00000284753 EEF1AKMT4 EEF1A lysine methyltransferase 4 3 184249672 184258759 protein_coding HGNC:53611 6.8690003 6.6337439 7.4434559 7.1904638 6.1633691 6.0327867 6.6918765 5.6734531 6.0742933 5.8877499 6.3251057 7.0669434
ENSG00000225073 -2.9756550 2.0275098 3.120446 8.968612 0.0034374 0.4287718 ENSG00000225073 DDX39B DExD-box helicase 39B HSCHR6_MHC_COX_CTG1 3007552 3023908 protein_coding HGNC:13917 2.7015832 1.4532410 -13.2877124 1.6392868 -0.9594750 -13.2877124 -13.2877124 2.9630318 1.8178708 2.5012116 -2.5438768 1.6274431
ENSG00000013297 1.0068560 -0.5401569 7.224316 9.250216 0.0034883 0.4287718 ENSG00000013297 CLDN11 claudin 11 3 170418868 170454733 protein_coding HGNC:8514 5.8625523 4.8299809 5.4294671 6.3573889 6.9904513 6.3607516 7.1728680 4.5441961 5.5239076 5.1156646 6.8811414 5.7259655
ENSG00000129757 1.6442648 -0.7193743 4.607129 9.258687 0.0035448 0.4287718 ENSG00000129757 CDKN1C cyclin dependent kinase inhibitor 1C 11 2883213 2885775 protein_coding HGNC:1786 3.3763097 1.7399224 1.7308004 3.6750575 4.7294796 4.7920510 4.0940213 2.8126169 2.1475317 2.5180652 4.5710834 2.8980493
ENSG00000148798 -0.4243527 -1.7654131 5.847229 9.213513 0.0035527 0.4287718 ENSG00000148798 INA internexin neuronal intermediate filament protein alpha 10 103277138 103290346 protein_coding HGNC:6057 4.5302429 4.4257669 4.1631346 4.2637918 3.0417453 4.2729351 4.1650510 2.5317702 2.5886175 2.5604738 3.9230342 4.3527037
ENSG00000171759 -0.6065601 -1.8494324 5.884319 9.201612 0.0035697 0.4287718 ENSG00000171759 PAH phenylalanine hydroxylase 12 102836889 102958410 protein_coding HGNC:8582 8.8615744 8.0264001 9.2103454 9.7189878 8.8526635 7.7970263 8.6547599 7.6677661 6.3672376 7.1593396 8.5021416 9.0774946
ENSG00000113209 0.0077013 -3.2293513 3.941841 8.842074 0.0035737 0.4287718 ENSG00000113209 PCDHB5 protocadherin beta 5 5 141135206 141138615 protein_coding HGNC:8690 1.3686896 2.3037854 1.8251290 2.7414154 1.0281794 2.0283517 2.7971047 -0.7127145 0.4630961 -0.0081976 2.1231447 2.1497897
ENSG00000131016 1.5815387 0.0096817 5.195991 9.217056 0.0035742 0.4287718 ENSG00000131016 AKAP12 A-kinase anchoring protein 12 6 151239967 151358559 protein_coding HGNC:370 0.4420326 0.9111708 2.1448236 1.2619291 2.8650187 2.8657476 3.3117439 0.3649803 1.9951936 1.3990508 3.0299973 1.3305056
ENSG00000158445 -1.3186466 -1.0829731 4.874255 9.218540 0.0035786 0.4287718 ENSG00000158445 KCNB1 potassium voltage-gated channel subfamily B member 1 20 49293394 49484297 protein_coding HGNC:6231 2.4195874 2.0464020 2.7486592 2.8005355 1.5609194 0.5791145 1.3624834 0.8761637 1.7768982 1.3957138 1.2256087 2.5341137
ENSG00000224501 -0.7701764 2.7692727 4.439228 8.984811 0.0036273 0.4287718 ENSG00000224501 HSPA1B heat shock protein family A (Hsp70) member 1B HSCHR6_MHC_COX_CTG1 3304988 3307511 protein_coding HGNC:5233 -13.2877124 -13.2877124 1.8701497 3.4156727 0.8843494 -13.2877124 1.7486579 3.9161664 4.8437891 4.4532830 0.7953489 1.8406916
ENSG00000164284 -1.2164107 -1.1996461 5.215254 9.161019 0.0036509 0.4287718 ENSG00000164284 GRPEL2 GrpE like 2, mitochondrial 5 149345430 149354583 protein_coding HGNC:21060 3.5707510 2.8382699 3.8281328 3.6369077 3.1624292 2.6762112 1.7996241 2.3497242 2.8834601 2.6411351 2.6497233 3.5133966
ENSG00000183718 -1.1399504 -0.5549888 6.630051 8.983970 0.0038884 0.4287718 ENSG00000183718 TRIM52 tripartite motif containing 52 5 181254077 181261150 protein_coding HGNC:19024 5.7053109 5.5212567 6.0268919 5.6477059 4.7228012 4.5606351 4.7317219 5.0859259 5.3237322 5.2097236 4.6738345 5.7376878
ENSG00000149968 -4.9328593 -3.8525626 4.674612 8.027462 0.0038952 0.4287718 ENSG00000149968 MMP3 matrix metallopeptidase 3 11 102835801 102843609 protein_coding HGNC:7173 1.3861703 -13.2877124 2.8594655 6.7411634 -0.5219725 0.0565891 -0.4868752 1.3169034 0.0753629 0.8257588 -0.2921855 4.8685002
ENSG00000101460 0.2070814 1.5555497 5.833240 8.981411 0.0039063 0.4287718 ENSG00000101460 MAP1LC3A microtubule associated protein 1 light chain 3 alpha 20 34546854 34560345 protein_coding HGNC:6838 4.9437838 5.8269495 4.9154398 6.0734879 6.3645221 6.0564660 5.4147488 7.7593890 6.7417767 7.3385046 5.9970652 5.5318933
ENSG00000170390 -0.9098780 -2.4582871 4.038070 8.918845 0.0039142 0.4287718 ENSG00000170390 DCLK2 doublecortin like kinase 2 4 150078445 150257438 protein_coding HGNC:19002 1.9972071 1.8171357 2.8232492 2.2616614 1.3318502 0.5521104 1.7783604 0.0067404 -0.6387841 -0.2802146 1.3052591 2.2771705
ENSG00000100629 2.7069922 3.2800999 3.137887 7.710032 0.0039899 0.4287718 ENSG00000100629 CEP128 centrosomal protein 128 14 80476983 80959517 protein_coding HGNC:20359 -13.2877124 1.2425702 -1.6574362 0.5367572 1.6040405 1.4529111 -0.8107840 3.0590022 1.0054733 2.3703822 1.0812503 0.0475412
ENSG00000011028 0.9103826 0.2508215 9.096854 8.911028 0.0040010 0.4287718 ENSG00000011028 MRC2 mannose receptor C-type 2 17 62627670 62693597 protein_coding HGNC:16875 6.1938101 5.9527798 5.9598909 6.0636948 7.5139225 6.8082501 7.1436629 6.3943201 6.0083553 6.2142066 7.1840376 6.0458972
ENSG00000237206 -3.0178448 -5.5229582 4.163669 8.217566 0.0040649 0.4287718 ENSG00000237206 IMPDH1P4 X 43278125 43279658 processed_pseudogene HGNC:33959 4.7274424 2.0490700 -0.1577066 5.8086863 0.7826644 -13.2877124 2.4040974 -0.3804424 -13.2877124 -1.3802546 1.2251614 4.4524927
ENSG00000214176 -1.5273632 0.3005208 4.635458 8.848042 0.0041092 0.4287718 ENSG00000214176 PLEKHM1P1 17 64785259 64829208 transcribed_unprocessed_pseudogene HGNC:35411 2.4302293 2.0264304 2.7357875 2.9381604 1.5685444 2.6935492 0.8617887 2.3913608 3.8126758 3.2703980 1.9071949 2.5722414
ENSG00000142552 1.1989766 1.0505510 6.924750 8.840585 0.0041215 0.4287718 ENSG00000142552 RCN3 reticulocalbin 3 19 49528003 49546962 protein_coding HGNC:21145 5.2512972 6.1268831 5.2427169 5.8470691 6.5337028 6.8454212 7.1357517 7.1172814 6.1781525 6.7228211 6.8591107 5.6681651
ENSG00000111799 1.0524832 -0.3315360 6.692690 8.836377 0.0041290 0.4287718 ENSG00000111799 COL12A1 collagen type XII alpha 1 chain 6 75084326 75206267 protein_coding HGNC:2188 2.5654354 3.2379753 1.7698957 4.9416354 3.2056381 3.6199185 4.3947962 2.9180734 3.8585955 3.4636578 3.8263278 3.6292284
ENSG00000091129 -1.2609972 -2.5766784 4.998171 8.861025 0.0041326 0.4287718 ENSG00000091129 NRCAM neuronal cell adhesion molecule 7 108147623 108456717 protein_coding HGNC:7994 3.7648677 4.9024440 2.5712975 4.1007887 3.9043890 3.2412149 3.5237407 -1.6439599 0.9407095 0.1631445 3.5822083 4.0575062
ENSG00000128699 -2.7005699 0.0973517 3.896304 8.241915 0.0041392 0.4287718 ENSG00000128699 ORMDL1 ORMDL sphingolipid biosynthesis regulator 1 2 189766012 189784364 protein_coding HGNC:16036 3.0107090 4.2942497 3.8243084 1.9542641 0.3097525 1.3996655 -0.6556987 3.6453799 3.9281805 3.7936986 0.5890175 3.5147607
ENSG00000106511 4.4061047 4.0736191 3.424041 7.881008 0.0041460 0.4287718 ENSG00000106511 MEOX2 mesenchyme homeobox 2 7 15611212 15686683 protein_coding HGNC:7014 -13.2877124 -1.0179750 -0.9088269 -13.2877124 1.8384355 1.6131167 3.5881074 3.3320474 -1.3637499 2.3866674 2.6370326 -1.9620876
ENSG00000168477 3.0385896 4.2795468 4.131288 7.927390 0.0042023 0.4287718 ENSG00000168477 TNXB tenascin XB 6 32041153 32115334 protein_coding HGNC:11976 -1.1406792 -13.2877124 -13.2877124 -13.2877124 1.8195668 -13.2877124 3.0645763 0.4419986 1.7236001 1.2206643 1.9874511 -3.1397253
ENSG00000185627 1.3400485 0.2377634 4.689533 8.825606 0.0042160 0.4287718 ENSG00000185627 PSMD13 proteasome 26S subunit, non-ATPase 13 11 236966 252984 protein_coding HGNC:9558 2.7913617 4.2875254 3.5079927 3.8035858 4.6733912 4.7091920 4.8597590 3.1414621 3.7709761 3.4902852 4.7497316 3.6946462
ENSG00000075043 -2.1994908 -2.3725545 4.639640 8.750415 0.0042590 0.4287718 ENSG00000075043 KCNQ2 potassium voltage-gated channel subfamily Q member 2 20 63400208 63472677 protein_coding HGNC:6296 3.1177097 0.3758190 1.4678987 4.2226695 -0.6960451 1.1980088 -0.3763241 -0.8240756 1.8213661 1.0352720 0.2954832 2.9733405
ENSG00000152580 1.0574497 -0.3063813 5.439487 8.772427 0.0042605 0.4287718 ENSG00000152580 IGSF10 immunoglobulin superfamily member 10 3 151425384 151461061 protein_coding HGNC:26384 2.5572143 3.3803137 1.5150529 1.7353874 1.8953844 2.2814704 3.1595748 1.2495904 0.5909766 0.9575447 2.5457712 2.4909862
ENSG00000133433 -4.3829950 2.6851651 3.139940 8.986392 0.0042796 0.4287718 ENSG00000133433 GSTT2B glutathione S-transferase theta 2B 22 23957414 23961195 protein_coding HGNC:33437 2.8912368 -13.2877124 3.0599253 -13.2877124 -13.2877124 -13.2877124 -13.2877124 4.1530527 4.5632170 4.3726625 -13.2877124 1.9780634
ENSG00000168646 1.3068478 1.3498782 5.204400 8.706255 0.0044028 0.4313448 ENSG00000168646 AXIN2 axin 2 17 65528563 65561648 protein_coding HGNC:904 1.8569729 3.3997448 2.5545731 2.1519857 3.5952640 4.3446904 4.0019497 3.9959806 3.1917079 3.6491788 4.0127381 2.6144738
ENSG00000167194 -1.2218006 -1.5017236 6.838620 8.650680 0.0044600 0.4313448 ENSG00000167194 C16orf92 chromosome 16 open reading frame 92 16 30023198 30027736 protein_coding HGNC:26346 7.5980307 7.8621361 8.4976735 7.2177287 6.9124641 6.1600109 6.8219465 5.4780698 6.8270342 6.3047879 6.6682228 7.8714786
ENSG00000231945 3.8672056 2.2851958 3.723439 7.682559 0.0044765 0.4313448 ENSG00000231945 VARS1 valyl-tRNA synthetase 1 HSCHR6_MHC_SSTO_CTG1 3076809 3094270 protein_coding HGNC:12651 -13.2877124 2.9477286 1.6345826 -13.2877124 3.9421330 3.4833975 2.9152440 -13.2877124 4.4787320 3.4787385 3.5066842 1.4356969
ENSG00000165124 1.6017275 0.1472836 4.161927 8.666722 0.0045082 0.4313448 ENSG00000165124 SVEP1 sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 9 110365248 110579880 protein_coding HGNC:15985 0.6463138 1.6491891 0.8977833 0.7009599 2.0161201 1.0922129 1.6648696 1.2182784 1.2962354 1.2577831 1.6396647 1.0339558
ENSG00000087116 1.6381750 0.1899116 5.347694 8.610366 0.0045720 0.4313448 ENSG00000087116 ADAMTS2 ADAM metallopeptidase with thrombospondin type 1 motif 2 5 179110853 179345461 protein_coding HGNC:218 2.3586857 0.9220540 1.1408271 1.0849643 2.8336928 3.1517827 3.6698233 2.0737013 1.2470410 1.7187877 3.2602024 1.5046504
ENSG00000273579 -2.6104231 -0.3806555 4.594024 8.407303 0.0046392 0.4313448 ENSG00000273579 C22orf15 chromosome 22 open reading frame 15 HSCHR22_1_CTG7 449 2223 protein_coding HGNC:15558 5.3603064 5.2121093 4.6026697 3.2329953 1.5888674 -13.2877124 2.4317885 4.0120558 4.6490088 4.3654024 1.4860877 4.8053582
ENSG00000152049 -0.1731529 -3.4937966 5.137625 8.431988 0.0047669 0.4313448 ENSG00000152049 KCNE4 potassium voltage-gated channel subfamily E regulatory subunit 4 2 223052190 223198399 protein_coding HGNC:6244 4.4404752 2.6221106 2.2564992 4.2200811 3.2535817 2.2535594 4.1157755 -0.0724873 0.1100024 0.0216418 3.3988429 3.6804485
ENSG00000265188 -1.0587682 -0.3303832 7.222717 8.486549 0.0047757 0.4313448 ENSG00000265188 18 5240255 5241167 processed_pseudogene 7.7706445 7.7763960 8.2015755 8.2201507 6.6854408 6.4499758 7.4765019 7.5226118 7.7080427 7.6183040 6.9403406 8.0087194
ENSG00000167281 -1.2208723 -1.5464322 5.206941 8.495641 0.0048024 0.4313448 ENSG00000167281 RBFOX3 RNA binding fox-1 homolog 3 17 79089345 79611051 protein_coding HGNC:27097 3.5875257 4.7695503 4.8513756 5.0723739 3.0976740 6.2294224 3.5368940 2.6468449 2.9617009 2.8128453 4.9879047 4.6697485
ENSG00000274287 7.4401098 0.0000000 3.427692 10.787199 0.0048491 0.4313448 ENSG00000274287 SCRIB scribble planar cell polarity protein HSCHR8_3_CTG7 267967 292426 protein_coding HGNC:30377 -13.2877124 -13.2877124 -13.2877124 -13.2877124 3.1013647 2.3669253 -13.2877124 -13.2877124 -13.2877124 -13.2877124 2.1954323 -13.2877124
ENSG00000285991 0.7139603 -3.2688554 4.265035 8.141456 0.0048529 0.4313448 ENSG00000285991 6 149817937 149896011 protein_coding 1.7718919 1.3045835 2.1635267 0.5116472 0.3181849 1.8719272 3.2136568 -1.8075230 -1.9010200 -1.8535142 2.2412263 1.5596023
ENSG00000100416 0.7234801 1.5370818 5.182004 8.470939 0.0048580 0.4313448 ENSG00000100416 TRMU tRNA mitochondrial 2-thiouridylase 22 46330875 46357340 protein_coding HGNC:25481 3.1865584 3.3053660 3.0463821 4.1410795 4.6679098 5.1275770 4.1490724 5.7445174 4.1845272 5.1658388 4.7026697 3.4884919
ENSG00000116132 0.6799501 -0.2830854 6.922411 8.443599 0.0048631 0.4313448 ENSG00000116132 PRRX1 paired related homeobox 1 1 170662728 170739421 protein_coding HGNC:9142 6.0888863 5.0262286 5.2937703 5.3380810 6.1979435 6.4967551 5.8357480 5.0079404 4.3460707 4.7146335 6.2018385 5.4945071
ENSG00000072682 1.0447225 0.4800907 6.911663 8.438557 0.0048740 0.4313448 ENSG00000072682 P4HA2 prolyl 4-hydroxylase subunit alpha 2 5 132190147 132295315 protein_coding HGNC:8547 5.7447451 5.9514185 6.4477921 6.5702442 7.1553120 7.1059454 7.5858154 6.7687605 5.7904497 6.3609891 7.2989511 6.2183013
ENSG00000135956 0.3127950 0.9918446 6.334776 8.407702 0.0049424 0.4318293 ENSG00000135956 TMEM127 transmembrane protein 127 2 96248500 96266047 protein_coding HGNC:26038 5.2867790 2.9487186 4.6533015 3.3638649 3.6701692 5.2464254 5.5814047 5.4064141 4.7027115 5.0970499 5.0381482 4.3613655
ENSG00000145604 -0.0674108 2.3094997 3.231060 7.785965 0.0049997 0.4318293 ENSG00000145604 SKP2 S-phase kinase associated protein 2 5 36151989 36196849 protein_coding HGNC:10901 -1.5587375 0.6644583 -0.1612354 2.5400870 0.7791345 1.3547788 -0.0948478 3.8541506 3.1278861 3.5362447 0.7963353 1.1101828
ENSG00000175595 -1.6277830 -2.1030738 3.627374 8.192174 0.0050014 0.4318293 ENSG00000175595 ERCC4 ERCC excision repair 4, endonuclease catalytic subunit 16 13920138 13952348 protein_coding HGNC:3436 3.3597654 2.4699690 1.6349162 4.0262887 -0.2921625 2.6742810 1.2637616 0.0968178 0.4194073 0.2671103 1.6782360 3.1377484
ENSG00000130226 3.0639949 -0.1550017 3.100887 7.284152 0.0052204 0.4349949 ENSG00000130226 DPP6 dipeptidyl peptidase like 6 7 153748133 154894285 protein_coding HGNC:3010 -1.1606015 -13.2877124 -13.2877124 0.8572732 2.7175543 0.0806781 2.0355532 -13.2877124 -0.8903132 -1.8900458 1.9677689 -0.8242284
ENSG00000140543 2.3519019 0.4327232 3.175403 7.754878 0.0052253 0.4349949 ENSG00000140543 DET1 DET1 partner of COP1 E3 ubiquitin ligase 15 88494440 88546681 protein_coding HGNC:25477 -0.7065707 0.2392966 0.2827399 -0.3226316 2.5322514 1.3800367 2.7252545 0.0323915 0.9970416 0.5938839 2.3219527 -0.0704721
ENSG00000237733 -6.5282245 -2.1057215 3.258837 8.962478 0.0052512 0.4349949 ENSG00000237733 RNF39 ring finger protein 39 HSCHR6_MHC_MANN_CTG1 1331016 1336637 protein_coding HGNC:18064 3.2868770 2.1013391 2.9263995 2.4978974 -13.2877124 -13.2877124 -13.2877124 -13.2877124 1.5280331 0.5280832 -13.2877124 2.7709227
ENSG00000143369 -0.1883317 0.8359761 8.253523 8.232335 0.0053192 0.4349949 ENSG00000143369 ECM1 extracellular matrix protein 1 1 150508062 150513789 protein_coding HGNC:3153 7.1287008 7.2200385 6.8412514 6.7307894 7.1248110 6.9069356 6.5760270 7.8116607 7.8603092 7.8361899 6.8866221 6.9940909
ENSG00000151150 -1.4795040 -3.1532331 4.294317 8.137380 0.0053368 0.4349949 ENSG00000151150 ANK3 ankyrin 3 10 60026298 60733490 protein_coding HGNC:494 2.1518770 4.0123221 2.9873862 1.8235924 -0.0957834 2.4589011 -0.1018102 -13.2877124 -0.1084097 -1.1082542 1.2958417 3.0023097
ENSG00000204463 -7.4664971 1.6041210 5.071158 9.043889 0.0053494 0.4349949 ENSG00000204463 BAG6 BAG cochaperone 6 6 31639028 31652705 protein_coding HGNC:13919 -13.2877124 1.3095802 4.5203894 2.9801151 -13.2877124 -13.2877124 -13.2877124 5.2280725 2.9699578 4.5019405 -13.2877124 3.0582630
ENSG00000138119 1.2282000 0.1992036 5.765165 8.216839 0.0053730 0.4349949 ENSG00000138119 MYOF myoferlin 10 93306429 93482334 protein_coding HGNC:3656 1.8822991 2.4482645 1.4233184 2.9032414 3.3631050 4.0441808 3.8811218 2.7731710 1.8801060 2.3946664 3.7908257 2.2710733
ENSG00000146221 -1.5177810 -1.8557893 6.635486 8.159539 0.0054971 0.4349949 ENSG00000146221 TCTE1 t-complex-associated-testis-expressed 1 6 44278734 44297698 protein_coding HGNC:11693 5.4675470 5.9553555 5.4558512 5.0694377 2.3019218 3.9407953 4.7835570 4.1452634 2.9664964 3.6730634 3.9948738 5.5217327
ENSG00000143341 0.7724519 -0.2244021 6.844883 8.127478 0.0055675 0.4349949 ENSG00000143341 HMCN1 hemicentin 1 1 185734391 186190949 protein_coding HGNC:19194 2.8563396 3.8990044 2.1698285 2.6779885 3.3494404 4.0845814 4.8242772 3.1644233 2.4509024 2.8513317 4.2091667 3.0469850
ENSG00000074181 0.9305804 0.1344988 6.438354 8.112033 0.0056076 0.4349949 ENSG00000074181 NOTCH3 notch receptor 3 19 15159038 15200995 protein_coding HGNC:7883 2.7526687 2.8495614 2.1140105 3.1613148 3.7979116 3.9934409 3.5473405 3.0458525 3.3047095 3.1810789 3.7910221 2.7667444
ENSG00000128050 -1.0320997 -0.7023855 6.116953 8.113268 0.0056120 0.4349949 ENSG00000128050 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 4 56435741 56464578 protein_coding HGNC:8587 4.2637672 3.3129377 3.7189388 3.9289901 2.8416473 3.0982592 2.6091599 3.6491169 3.1764286 3.4320458 2.8635230 3.8466673
ENSG00000183049 -2.6662782 -0.3539371 3.500310 7.460347 0.0056732 0.4349949 ENSG00000183049 CAMK1D calcium/calmodulin dependent protein kinase ID 10 12349547 12835545 protein_coding HGNC:19341 0.4982304 0.2306137 1.1634569 -0.4718208 -1.8962647 -2.3071301 -2.8655214 -0.0499303 1.0128075 0.5771591 -2.3030283 0.4716564
ENSG00000137142 -0.4207992 -1.0417564 6.250394 8.069050 0.0057149 0.4349949 ENSG00000137142 IGFBPL1 insulin like growth factor binding protein like 1 9 38406528 38424454 protein_coding HGNC:20081 4.6196143 4.2080548 4.6408799 4.7338562 4.2042896 3.9110715 4.2361565 3.4249876 3.5383878 3.4828018 4.1244117 4.5641227
ENSG00000125734 1.4770669 0.8628655 4.276008 8.100962 0.0057240 0.4349949 ENSG00000125734 GPR108 G protein-coupled receptor 108 19 6729914 6737580 protein_coding HGNC:17829 3.5055529 3.2959659 2.4313071 3.1829063 4.6968216 3.6571640 3.8679620 3.5605363 3.9058801 3.7435169 4.1470727 3.1559983
ENSG00000128564 -1.6976152 -1.3610587 4.975245 8.070837 0.0057633 0.4349949 ENSG00000128564 VGF VGF nerve growth factor inducible 7 101162509 101165569 protein_coding HGNC:12684 4.7188771 4.5188108 4.5626734 3.8812955 2.9881399 1.5412373 3.0248108 2.1050223 3.3241251 2.8396859 2.6617277 4.4533048
ENSG00000204624 -2.1146580 -2.5966127 4.282143 7.954449 0.0058148 0.4349949 ENSG00000204624 DISP3 dispatched RND transporter family member 3 1 11479155 11537551 protein_coding HGNC:29251 1.2823752 2.0436136 1.9133000 3.7429971 -2.2336508 1.9804922 0.7966600 0.6114160 -2.6165606 -0.2422820 0.9747672 2.5674878
ENSG00000112246 1.0933997 2.1793292 4.514278 8.046413 0.0058552 0.4349949 ENSG00000112246 SIM1 SIM bHLH transcription factor 1 6 100385009 100464921 protein_coding HGNC:10882 -3.0099833 0.8295411 0.8470925 2.1145213 0.5126567 1.3730440 2.2169105 2.2680022 3.0461991 2.7089469 1.5303719 1.0055063
ENSG00000196352 1.5939106 0.7087874 5.341813 8.023112 0.0058708 0.4349949 ENSG00000196352 CD55 CD55 molecule (Cromer blood group) 1 207321519 207386804 protein_coding HGNC:2665 4.3989807 2.1397717 4.1632416 3.4452954 5.2359703 4.9959683 5.2091597 4.4569693 4.2626323 4.3630708 5.1509593 3.7632437
ENSG00000106333 0.9577534 0.6803134 7.872098 8.002408 0.0058761 0.4349949 ENSG00000106333 PCOLCE procollagen C-endopeptidase enhancer 7 100602363 100608175 protein_coding HGNC:8738 6.9611863 6.6907630 6.7855181 6.7472407 7.6936402 7.4915330 8.0451573 7.7952536 7.0216313 7.4596882 7.7618211 6.7997789
ENSG00000136999 -2.3287477 -2.5646982 4.084775 7.834218 0.0058881 0.4349949 ENSG00000136999 CCN3 cellular communication network factor 3 8 119416446 119424434 protein_coding HGNC:7885 2.0562769 3.4228580 4.0279396 3.8505414 1.7754459 -0.4493239 0.5864112 1.8099499 -13.2877124 0.8099906 0.9151591 3.5116597
ENSG00000113212 -0.7743873 -2.9250957 3.801585 7.811054 0.0058982 0.4349949 ENSG00000113212 PCDHB7 protocadherin beta 7 5 141172644 141176383 protein_coding HGNC:8692 1.6724873 2.3276514 2.1532505 2.0317311 1.8708192 1.4566490 -0.0973599 -0.2846601 -2.1004160 -0.9239527 1.2901973 2.0656371
ENSG00000180447 1.1312694 -0.4053562 4.992494 7.980349 0.0059939 0.4371239 ENSG00000180447 GAS1 growth arrest specific 1 9 86944362 86947506 protein_coding HGNC:4165 2.9545254 2.5243022 1.8010688 3.1646824 4.1858340 3.2431850 3.8888114 2.5845361 1.8820510 2.2756350 3.8238041 2.6980437
ENSG00000100968 1.3122341 -0.0034281 5.307020 7.966868 0.0060094 0.4371239 ENSG00000100968 NFATC4 nuclear factor of activated T cells 4 14 24365673 24379604 protein_coding HGNC:7778 2.4096405 1.9739404 4.7088996 3.2605939 4.6613416 5.7011489 5.4589492 3.1869765 4.5262768 4.0067612 5.3376601 3.4911630
ENSG00000206435 8.7713842 0.0000000 4.544569 9.917605 0.0061821 0.4466241 ENSG00000206435 HLA-C major histocompatibility complex, class I, C HSCHR6_MHC_SSTO_CTG1 2570707 2574099 protein_coding HGNC:4933 -13.2877124 -13.2877124 -13.2877124 -13.2877124 3.4061415 7.0861003 -13.2877124 -13.2877124 -13.2877124 -13.2877124 5.6095266 -13.2877124
ENSG00000133083 1.1989274 -0.3310637 5.251683 7.863617 0.0062897 0.4502563 ENSG00000133083 DCLK1 doublecortin like kinase 1 13 35768652 36131382 protein_coding HGNC:2700 2.4552020 2.7279213 1.4549818 2.5952002 4.0440093 3.4800980 3.2028794 3.0265342 1.0636141 2.3559550 3.6191099 2.3849591
ENSG00000130635 1.4021842 0.2356279 10.688110 7.836971 0.0063176 0.4502563 ENSG00000130635 COL5A1 collagen type V alpha 1 chain 9 134641803 134844843 protein_coding HGNC:2209 6.9270598 7.2012251 5.8185884 6.6953617 8.1819054 7.7001257 8.4132381 7.5683774 6.0063233 6.9891765 8.1280186 6.7445648
ENSG00000118971 -0.3231362 -1.3184605 8.048275 7.793588 0.0064405 0.4502563 ENSG00000118971 CCND2 cyclin D2 12 4269771 4305353 protein_coding HGNC:1583 4.8798649 5.4253738 5.0378243 6.3577985 4.8974893 5.0457979 5.3897067 4.0067573 4.2247455 4.1198649 5.1259998 5.5490589
ENSG00000272674 0.0471595 -2.2492789 4.523672 7.794279 0.0064492 0.4502563 ENSG00000272674 PCDHB16 protocadherin beta 16 5 141182387 141186226 protein_coding HGNC:14546 4.0376383 2.2135293 0.7611346 2.5590468 2.7026569 1.6019213 1.9976028 0.0877561 -0.4350658 -0.1501000 2.1740686 2.8404131
ENSG00000205978 0.3759911 -4.7604448 4.213784 7.481156 0.0064773 0.4502563 ENSG00000205978 NYNRIN NYN domain and retroviral integrase containing 14 24399003 24419283 protein_coding HGNC:20165 1.7218101 0.4809992 -0.4159245 1.5651521 -0.7979823 1.1125440 2.4020299 -2.9505254 -13.2877124 -3.9494105 1.4191581 1.0708763
ENSG00000108821 1.6012224 0.2835851 13.223743 7.777242 0.0064867 0.4502563 ENSG00000108821 COL1A1 collagen type I alpha 1 chain 17 50184101 50201632 protein_coding HGNC:2197 11.2463341 10.5483855 9.8668102 10.7105311 11.5061251 11.8747109 12.7913025 11.4349320 9.9779847 10.8830542 12.1624559 10.6742453
ENSG00000188517 2.8014503 0.0088735 3.120551 7.016486 0.0065879 0.4543086 ENSG00000188517 COL25A1 collagen type XXV alpha 1 chain 4 108808725 109302752 protein_coding HGNC:18603 -2.1057092 -13.2877124 -0.3257491 -0.2075977 4.6972044 1.8051649 2.3571880 -13.2877124 0.4407726 -0.5591211 3.5260754 -1.0768134
ENSG00000272899 -1.4148774 -3.0807599 5.521882 7.735182 0.0066616 0.4564302 ENSG00000272899 SPMIP1 sperm microtubule inner protein 1 7 128866330 128872047 protein_coding HGNC:52392 2.1650874 2.6513486 5.2516276 4.4687341 1.9378506 1.9933360 3.4389297 0.8893287 1.0209232 0.9566254 2.6367364 4.1498971
ENSG00000285362 4.3010726 2.8749445 3.828361 6.791732 0.0067086 0.4566981 ENSG00000285362 HSCHR7_3_CTG4_4 253977 254270 protein_coding -13.2877124 -0.2263581 -13.2877124 -0.4254102 4.0136770 3.4676455 -13.2877124 -13.2877124 3.0446323 2.0446498 3.1813841 -1.3222737
ENSG00000079689 -4.9647721 -2.3322238 3.623991 7.382232 0.0069470 0.4607281 ENSG00000079689 SCGN secretagogin, EF-hand calcium binding protein 6 25652201 25701783 protein_coding HGNC:16941 -0.1571740 4.9354718 4.1699647 2.6985828 -13.2877124 -13.2877124 -0.0152707 2.0206057 0.5339929 1.4608663 -1.5999417 3.8070759
ENSG00000135437 -0.0961390 2.4257742 3.502740 7.270975 0.0069696 0.4607281 ENSG00000135437 RDH5 retinol dehydrogenase 5 12 55720367 55724705 protein_coding HGNC:9940 2.9090309 4.1310014 -13.2877124 4.1065705 3.2842387 -13.2877124 3.8832700 5.3332289 4.8471695 5.1105729 3.0296679 3.4011780
ENSG00000025039 -0.7923951 -2.8896603 3.763954 7.444591 0.0069699 0.4607281 ENSG00000025039 RRAGD Ras related GTP binding D 6 89364616 89412273 protein_coding HGNC:19903 2.0548735 1.9192329 0.8196772 2.9775913 0.1981056 3.1070998 1.2290944 -0.9804546 -1.5073408 -1.2199772 2.0129114 2.1357813
ENSG00000135185 -1.2713751 0.5366262 4.598665 7.618665 0.0069951 0.4607281 ENSG00000135185 TMEM243 transmembrane protein 243 7 87196160 87220587 protein_coding HGNC:21707 5.0952562 5.1947237 6.2304970 6.4652926 5.4429972 3.3361968 4.6524244 6.5138625 5.6006114 6.1283247 4.7142444 5.8719289
ENSG00000085871 -1.3954193 -2.2220853 3.591343 7.442382 0.0070475 0.4607281 ENSG00000085871 MGST2 microsomal glutathione S-transferase 2 4 139665768 139740745 protein_coding HGNC:7063 3.9094650 4.9891103 4.4293401 4.4980325 3.6112157 3.5365601 1.1387548 2.3051633 1.7542547 2.0558471 3.1169389 4.5066626
ENSG00000137285 1.3416318 -0.0741214 6.239504 7.536871 0.0072343 0.4607281 ENSG00000137285 TUBB2B tubulin beta 2B class IIb 6 3223324 3231730 protein_coding HGNC:30829 4.4626807 4.8243355 3.0297801 5.4407154 5.6230173 6.0281825 6.2421609 4.3659083 4.7036050 4.5446146 5.9867318 4.6721543
ENSG00000166428 -0.9042634 0.4047889 6.684069 7.524184 0.0072723 0.4607281 ENSG00000166428 PLD4 phospholipase D family member 4 14 104924713 104937761 protein_coding HGNC:23792 4.9267799 4.5310843 5.1229968 4.0584620 4.0053876 3.8324228 3.9425315 4.4418486 5.7840372 5.2637041 3.9285418 4.7148802
ENSG00000285938 0.2597741 1.6691961 4.205322 7.546736 0.0073020 0.4607281 ENSG00000285938 BCL6-AS1 BCL6 antisense RNA 1 3 187743686 187793553 lncRNA HGNC:51843 2.8022331 3.2733106 2.9800094 3.9775184 3.6577735 3.9041508 3.1832323 5.4525560 4.3031177 4.9894052 3.6118062 3.3322181
ENSG00000206466 -3.4073422 -3.9775927 3.879305 6.777482 0.0074282 0.4607281 ENSG00000206466 GABBR1 gamma-aminobutyric acid type B receptor subunit 1 HSCHR6_MHC_MCF_CTG1 821016 898553 protein_coding HGNC:4070 -13.2877124 3.4642513 2.9129108 3.4304370 -13.2877124 -13.2877124 0.3307029 0.7571778 -13.2877124 -0.2427369 -1.2540303 2.8752594
ENSG00000188322 -1.1349406 -3.8716705 3.729095 7.067061 0.0074892 0.4607281 ENSG00000188322 SBK1 SH3 domain binding kinase 1 16 28259246 28323849 protein_coding HGNC:17699 1.6872739 1.2645202 -1.0903022 2.7330664 -0.1505659 1.4366085 -0.1195527 -2.3045406 -2.5335264 -2.4144951 0.5939778 1.6714389
ENSG00000061656 -1.9387831 -2.0836150 3.754607 7.274735 0.0075653 0.4607281 ENSG00000061656 SPAG4 sperm associated antigen 4 20 35615829 35621094 protein_coding HGNC:11214 4.0090978 4.5777019 3.6223293 4.6570480 3.1330515 2.0408423 0.9184572 3.0055811 0.2123676 2.2000014 2.3004005 4.2765944
ENSG00000166741 1.1748094 0.1148829 5.183245 7.441269 0.0075967 0.4607281 ENSG00000166741 NNMT nicotinamide N-methyltransferase 11 114257787 114313536 protein_coding HGNC:7861 4.5403241 4.3211009 4.2199410 5.9206439 5.1485007 5.9692185 5.7457471 5.2864284 4.3733016 4.9009339 5.6608493 4.9362492
ENSG00000107736 -1.3515631 -0.5743849 5.912052 7.433514 0.0075971 0.4607281 ENSG00000107736 CDH23 cadherin related 23 10 71396920 71815947 protein_coding HGNC:13733 3.9464344 4.0523215 3.7057716 3.2587812 1.4415531 1.9764700 2.9513565 3.1349155 2.2650678 2.7645795 2.2616494 3.7715587
ENSG00000259192 -2.0505017 -3.3603133 3.205361 6.784399 0.0076074 0.4607281 ENSG00000259192 15 38458760 38459540 processed_pseudogene 4.8027249 4.8863310 4.0242303 3.3104572 3.1583937 2.7093332 -13.2877124 0.9767969 0.6961897 0.8433053 2.3663124 4.3867694
ENSG00000171246 -0.6496216 -2.3665437 5.046413 7.437721 0.0076172 0.4607281 ENSG00000171246 NPTX1 neuronal pentraxin 1 17 80466834 80477843 protein_coding HGNC:7952 3.2328942 1.8419554 3.4834098 2.1992442 2.5232628 1.6255057 2.3858413 -0.8531441 1.0335668 0.3788756 2.2286439 2.8461531
ENSG00000185008 -1.3740743 -1.5996680 4.790371 7.432890 0.0076593 0.4607281 ENSG00000185008 ROBO2 roundabout guidance receptor 2 3 75906695 77649964 protein_coding HGNC:10250 0.3598922 3.5787274 2.6501704 4.1373714 4.0375723 3.0318204 2.4781984 0.1331979 3.4161900 2.5572768 3.3302040 3.2136344
ENSG00000149257 1.1379504 0.1854030 8.802167 7.401552 0.0076800 0.4607281 ENSG00000149257 SERPINH1 serpin family H member 1 11 75562056 75572783 protein_coding HGNC:1546 7.2153154 7.3002662 6.8718639 7.0887086 8.1019334 8.1523839 8.8414337 8.0432376 6.2751082 7.4146167 8.4065167 7.1278840
ENSG00000133110 1.8717287 -0.5984578 9.413543 7.398558 0.0076905 0.4607281 ENSG00000133110 POSTN periostin 13 37562583 37598844 protein_coding HGNC:16953 7.8230384 6.5364456 5.6339844 5.5089182 7.4256274 8.3714977 9.4726499 5.2459880 6.6630805 6.1219520 8.6601025 6.6951169
ENSG00000074582 -1.5415973 -0.1860704 4.389194 7.379104 0.0077362 0.4607281 ENSG00000074582 BCS1L BCS1 homolog, ubiquinol-cytochrome c reductase complex chaperone 2 218658764 218663443 protein_coding HGNC:1020 4.6675779 5.1105113 5.2770522 4.8382321 3.7715193 2.9819626 3.3806810 5.0375593 4.4316407 4.7661790 3.4138093 4.9925722
ENSG00000138161 1.4380528 3.3449402 4.384803 7.295108 0.0077375 0.4607281 ENSG00000138161 CUZD1 CUB and zona pellucida like domains 1 10 122832158 122846175 protein_coding HGNC:17937 -0.7351129 2.8714599 -13.2877124 0.6920379 2.6755457 3.4988965 1.7101714 5.4971895 2.6537628 4.6853746 2.8050074 1.2531555
ENSG00000168487 1.0461928 0.0670331 5.947279 7.388319 0.0077422 0.4607281 ENSG00000168487 BMP1 bone morphogenetic protein 1 8 22165140 22212326 protein_coding HGNC:1067 4.5594090 3.8090030 3.5348738 4.8034665 4.9393388 5.3931443 5.6298691 4.4673102 3.8271249 4.1824396 5.3484219 4.2688423
ENSG00000169371 -0.0468275 -2.8586328 3.950473 7.234619 0.0077564 0.4607281 ENSG00000169371 SNUPN snurportin 1 15 75598083 75626469 protein_coding HGNC:14245 3.0292313 3.9906576 4.2639145 4.8085855 2.6273325 3.6470525 4.4992784 1.2291480 -0.6019671 0.5864717 3.7838987 4.1557509
ENSG00000158714 -1.6803791 0.1863237 4.675701 7.374243 0.0077656 0.4607281 ENSG00000158714 SLAMF8 SLAM family member 8 1 159826811 159837492 protein_coding HGNC:21391 3.3170901 2.8609884 3.3463845 2.6725417 2.1709422 0.1705955 0.9402675 2.6773161 3.6225254 3.2259836 1.3310516 3.0780175
ENSG00000131503 -0.3376403 -1.4449974 6.009199 7.367405 0.0078158 0.4611346 ENSG00000131503 ANKHD1 ankyrin repeat and KH domain containing 1 5 140401814 140539856 protein_coding HGNC:24714 3.3705513 4.9107575 4.8463350 4.7639325 5.0418094 4.5613225 5.1129906 4.6184520 3.1660571 4.0677910 4.9253325 4.5903619
ENSG00000176907 -0.9868036 -3.7482177 3.655600 6.973074 0.0078631 0.4613609 ENSG00000176907 TCIM transcriptional and immune response regulator 8 40153482 40155310 protein_coding HGNC:1357 4.0004657 1.9802820 2.9667741 2.7442145 2.9070647 2.3484642 -0.5172013 -0.7129273 -0.9541237 -0.8284908 2.1475724 3.1072267
ENSG00000147889 -1.1759627 -1.1966719 5.328688 7.340201 0.0079508 0.4639420 ENSG00000147889 CDKN2A cyclin dependent kinase inhibitor 2A 9 21967752 21995301 protein_coding HGNC:1787 4.9838344 5.7761367 6.5278007 6.4808989 5.1353811 4.3559766 4.7461473 4.6478971 4.9722561 4.8191731 4.7807090 6.0662754
ENSG00000136237 -2.7502697 -1.4540787 3.105058 6.659173 0.0080462 0.4645911 ENSG00000136237 RAPGEF5 Rap guanine nucleotide exchange factor 5 7 22118236 22357154 protein_coding HGNC:16862 -0.3704895 0.6529582 1.1715681 3.9746726 -2.3021266 -1.7146712 -2.2713219 1.6861809 -1.6850924 0.8192676 -2.0698031 2.3448311
ENSG00000135083 -1.3194078 -1.6942553 4.182458 7.303998 0.0080706 0.4645911 ENSG00000135083 CCNJL cyclin J like 5 160249083 160345396 protein_coding HGNC:25876 2.1734722 2.2564213 3.5988506 3.6435064 0.9069252 3.3120844 1.8387784 0.5089661 0.9294638 0.7344812 2.3584072 3.0833058
ENSG00000147642 -1.4034123 -1.2169558 5.037347 7.303391 0.0081077 0.4645911 ENSG00000147642 SYBU syntabulin 8 109573978 109691791 protein_coding HGNC:26011 3.6059181 5.8371862 4.7360218 4.8131748 4.4581379 3.0816781 3.7817163 4.5085319 1.8851097 3.7254925 3.8810009 4.9554518
ENSG00000137332 -7.0071996 -7.0071996 3.505534 8.422030 0.0081369 0.4645911 ENSG00000137332 DDR1 discoidin domain receptor tyrosine kinase 1 HSCHR6_MHC_COX_CTG1 2360744 2379927 protein_coding HGNC:2730 2.7049408 -13.2877124 1.6709590 4.3447735 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 2.9080395
ENSG00000090539 1.1611039 1.1048124 5.472657 7.251410 0.0082719 0.4697718 ENSG00000090539 CHRD chordin 3 184380054 184390736 protein_coding HGNC:1949 4.0623576 2.5779861 2.4792099 3.7131615 4.4094721 4.5316202 3.1782769 4.9838789 3.9601096 4.5609619 4.1546772 3.3704726
ENSG00000106571 1.3449568 0.8250032 5.578501 7.234091 0.0083316 0.4706446 ENSG00000106571 GLI3 GLI family zinc finger 3 7 41960949 42264100 protein_coding HGNC:4319 4.7019417 1.6179788 3.3295662 3.4140689 5.0638246 3.2511649 4.1948315 4.2896336 1.8408556 3.5322858 4.3524351 3.6383380
ENSG00000026025 0.9023242 0.0016878 9.888308 7.195352 0.0084421 0.4706926 ENSG00000026025 VIM vimentin 10 17228241 17237593 protein_coding HGNC:12692 8.9061182 8.4267666 8.3651662 8.9399801 9.7781856 9.4890732 10.1158313 9.0675107 8.5636846 8.8374803 9.8171359 8.6836393
ENSG00000151458 -0.2326727 -1.5773379 5.226380 7.181575 0.0085500 0.4706926 ENSG00000151458 ANKRD50 ankyrin repeat domain containing 50 4 124664048 124712732 protein_coding HGNC:29223 2.5453877 2.5656474 2.4859476 3.0405844 2.9722008 2.0448298 2.4273678 1.8748300 0.5490284 1.3591512 2.5321242 2.6774022
ENSG00000120742 0.9093296 0.4544342 6.020022 7.157124 0.0086081 0.4706926 ENSG00000120742 SERP1 stress associated endoplasmic reticulum protein 1 3 150541998 150603228 protein_coding HGNC:10759 5.1712854 4.9572274 5.3528441 5.9242948 5.8997445 5.1266688 6.2561618 5.7532842 4.9319256 5.4002845 5.8335242 5.3982631
ENSG00000162493 2.0382658 1.1194339 4.112959 7.109871 0.0087467 0.4706926 ENSG00000162493 PDPN podoplanin 1 13583465 13617957 protein_coding HGNC:29602 1.1008546 2.8897786 -1.1820199 1.8902362 3.7119177 3.7610110 2.5530434 3.3594087 3.6065138 3.4882453 3.4387352 1.7765332
ENSG00000103855 0.4358296 -0.5843700 7.520227 7.108205 0.0087918 0.4706926 ENSG00000103855 CD276 CD276 molecule 15 73683966 73714514 protein_coding HGNC:19137 6.0766837 5.4810146 6.0826436 6.0468441 6.8024397 5.8994884 6.0287143 5.2829896 5.0402779 5.1667319 6.3013350 5.9427634
ENSG00000151388 0.0456942 -1.1929594 6.388562 7.105734 0.0088090 0.4706926 ENSG00000151388 ADAMTS12 ADAM metallopeptidase with thrombospondin type 1 motif 12 5 33523535 33892019 protein_coding HGNC:14605 3.6793375 3.3284826 3.0281434 3.7323439 3.7057861 3.2928063 4.0047113 2.7169891 1.7749877 2.3215449 3.6967642 3.4693992
ENSG00000249663 0.5466009 -7.3550918 4.675219 7.384077 0.0088551 0.4706926 ENSG00000249663 HSCHR6_MHC_MCF_CTG1 985707 986697 unprocessed_pseudogene -13.2877124 5.3575830 6.0996609 3.8688770 6.0667744 5.3582563 4.7148631 -13.2877124 -13.2877124 -13.2877124 5.4844936 4.9563852
ENSG00000166598 0.7598286 0.1118668 7.949517 7.080596 0.0089051 0.4706926 ENSG00000166598 HSP90B1 heat shock protein 90 beta family member 1 12 103930107 103953931 protein_coding HGNC:12028 6.9641059 6.4592486 6.9440919 6.6362539 7.2413154 7.0498136 7.6040456 6.7765482 6.4824132 6.6369637 7.3169853 6.7663715
ENSG00000116985 -1.2880269 -0.2417715 4.819554 7.096775 0.0089153 0.4706926 ENSG00000116985 BMP8B bone morphogenetic protein 8b 1 39757182 39788865 protein_coding HGNC:1075 2.5306394 2.4989935 2.8176095 2.6457501 1.8995376 0.8086437 0.9306594 2.3298567 2.3735522 2.3518700 1.3003475 2.6287344
ENSG00000143155 1.8472356 1.7097194 3.934064 7.014867 0.0089664 0.4706926 ENSG00000143155 TIPRL TOR signaling pathway regulator 1 168178962 168202109 protein_coding HGNC:30231 2.7661885 2.2722750 0.2929690 1.4865347 2.5548351 3.0395099 2.1398440 3.0146925 1.5795331 2.4686641 2.6249012 1.9691262
ENSG00000075426 1.0529477 0.0148684 7.155648 7.065051 0.0089720 0.4706926 ENSG00000075426 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 28392448 28417317 protein_coding HGNC:3798 5.1009508 3.5078612 4.0657859 4.5574552 4.5353933 4.7231433 6.0802513 4.2865470 3.7200776 4.0309381 5.2886384 4.4260654
ENSG00000119878 -2.1730145 0.1565773 3.855421 6.797208 0.0090350 0.4706926 ENSG00000119878 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 46616416 46685037 protein_coding HGNC:14312 3.5953881 2.8993479 2.4415045 3.3037087 1.8492527 -0.0622247 -0.3898197 3.6607738 2.8241053 3.3022598 0.8275874 3.1232734
ENSG00000144642 1.3159493 -0.2775925 4.688379 7.045265 0.0091751 0.4706926 ENSG00000144642 RBMS3 RNA binding motif single stranded interacting protein 3 3 28574791 30010391 protein_coding HGNC:13427 2.3293363 2.7669841 1.9639623 1.2969806 2.7961731 4.2520937 4.7553581 2.2894940 2.1187703 2.2066560 4.1432222 2.1851558
ENSG00000147459 0.1805943 1.2508730 5.127729 7.028931 0.0092006 0.4706926 ENSG00000147459 DOCK5 dedicator of cytokinesis 5 8 25184689 25418082 protein_coding HGNC:23476 3.9591777 0.6268092 1.7418639 3.0008996 0.6689333 1.6734045 1.0399336 3.0214938 3.5092693 3.2858987 1.1881255 2.8302257
ENSG00000116984 -0.8730139 0.3271773 5.478945 7.011452 0.0092470 0.4706926 ENSG00000116984 MTR 5-methyltetrahydrofolate-homocysteine methyltransferase 1 236795260 236921278 protein_coding HGNC:7468 2.8637732 2.4105362 2.6116136 3.1328415 2.9521705 2.6728763 2.6773795 3.6170133 2.6090514 3.1993267 2.7735073 2.7802767
ENSG00000056736 -0.7440752 -0.5695072 7.426486 6.998138 0.0092566 0.4706926 ENSG00000056736 IL17RB interleukin 17 receptor B 3 53846568 53865794 protein_coding HGNC:18015 6.5645315 6.4767359 6.7742142 6.8704097 6.3439574 5.5271593 5.6598235 6.2249791 5.9347811 6.0871645 5.8899784 6.6800856
ENSG00000017483 2.2271861 3.3080199 4.008996 6.712645 0.0092772 0.4706926 ENSG00000017483 SLC38A5 solute carrier family 38 member 5 X 48458537 48470260 protein_coding HGNC:18070 -0.7622625 3.6100651 -13.2877124 -13.2877124 4.5737177 4.0224334 4.5837792 4.3200475 5.4152385 4.9691633 4.4160454 1.6781165
ENSG00000052795 -1.8212050 -0.6937070 4.702251 6.995576 0.0092875 0.4706926 ENSG00000052795 FNIP2 folliculin interacting protein 2 4 158769026 158908050 protein_coding HGNC:29280 2.1657473 2.6303691 2.3388129 2.5249117 1.7980202 0.4980221 1.8436109 -0.0216696 4.1548918 3.2325458 1.4988932 2.4258001
ENSG00000227761 0.2184729 -3.5151641 5.722842 6.972514 0.0093121 0.4706926 ENSG00000227761 BAG6 BAG cochaperone 6 HSCHR6_MHC_DBB_CTG1 2886791 2900476 protein_coding HGNC:13919 5.8044424 6.1845245 5.4897944 5.3277685 5.3935787 6.4363635 4.9435251 4.1876889 -13.2877124 3.1876968 5.7316574 5.7395610
ENSG00000275650 -3.3332857 -0.3263661 3.974480 6.465136 0.0093907 0.4706926 ENSG00000275650 TTYH1 tweety family member 1 HSCHR19_4_CTG3_1 397719 419194 protein_coding HGNC:13476 2.8317437 2.1833833 3.0847161 2.2516231 0.7659717 -1.1750546 -1.7212444 3.1413672 -0.3844594 2.2614804 -0.2941436 2.6385101
ENSG00000024422 1.0382419 0.0635523 7.302118 6.939428 0.0095163 0.4706926 ENSG00000024422 EHD2 EH domain containing 2 19 47713422 47743134 protein_coding HGNC:3243 5.2889501 4.5809507 4.4806611 5.9699061 6.2466679 5.7292548 6.3936360 5.3920180 4.2957806 4.9456091 6.1501502 5.2097879
ENSG00000146966 1.0263557 -0.5396581 4.587767 6.961473 0.0095448 0.4706926 ENSG00000146966 DENND2A DENN domain containing 2A 7 140518420 140673993 protein_coding HGNC:22212 1.6704950 1.8376954 2.3802568 3.4304449 4.0380280 5.1624376 2.6800497 1.6437832 1.4964506 1.5719966 4.2890912 2.5074846
ENSG00000271425 -2.6602871 -0.6240434 3.789386 6.586241 0.0095533 0.4706926 ENSG00000271425 NBPF10 NBPF member 10 1 146064711 146229000 protein_coding HGNC:31992 -0.4440739 -0.1699118 1.6976377 0.9333687 -1.8446704 -1.8112598 -13.2877124 -0.0890187 0.2561882 0.0938853 -2.4125751 0.7607270
ENSG00000179242 -2.3777262 -6.6559434 3.363578 6.801682 0.0095944 0.4706926 ENSG00000179242 CDH4 cadherin 4 20 61252261 61940617 protein_coding HGNC:1763 1.1451453 1.8824975 1.8562698 -1.0063822 -13.2877124 -13.2877124 0.0193461 -13.2877124 -13.2877124 -13.2877124 -1.5653317 1.3244230
ENSG00000235220 -1.7239301 1.7915850 4.814778 6.850353 0.0096156 0.4706926 ENSG00000235220 HLA-F major histocompatibility complex, class I, F HSCHR6_MHC_DBB_CTG1 985849 1001601 protein_coding HGNC:4963 -13.2877124 4.9119960 6.0710233 6.1341781 1.9829144 -13.2877124 5.0229846 6.7775854 5.8960912 6.4031411 3.6035539 5.3886538
ENSG00000197956 0.0596150 0.8572351 8.045740 6.915764 0.0096217 0.4706926 ENSG00000197956 S100A6 S100 calcium binding protein A6 1 153534599 153536244 protein_coding HGNC:10496 10.0371185 9.6813386 10.5951212 10.2418955 10.6368189 9.9193737 10.1232480 10.7905992 10.9995444 10.8988508 10.2589124 10.1766483
ENSG00000105825 0.3592981 -2.3058548 7.136469 6.908296 0.0096630 0.4706926 ENSG00000105825 TFPI2 tissue factor pathway inhibitor 2 7 93885396 93890753 protein_coding HGNC:11761 7.6945941 4.9450031 6.0393700 7.7100904 7.9774567 7.1017150 7.8923504 5.2216552 4.1512550 4.7835305 7.7073001 7.0031766
ENSG00000160908 -0.7254339 0.0400841 7.074022 6.901715 0.0096889 0.4706926 ENSG00000160908 ZNF394 zinc finger protein 394 7 99473877 99504857 protein_coding HGNC:18832 4.7619494 4.5852866 4.8396938 4.7339294 4.1872966 3.7062662 4.1187969 4.6915889 4.6717635 4.6817101 4.0192251 4.7331265
ENSG00000214021 -1.0337385 -0.4483342 5.539968 6.909777 0.0096917 0.4706926 ENSG00000214021 TTLL3 tubulin tyrosine ligase like 3 3 9808086 9855138 protein_coding HGNC:24483 5.1573670 5.0278049 4.1556639 4.6762006 3.6479730 3.9440659 3.3861361 4.6131667 4.5075654 4.5613322 3.6774090 4.8034916
ENSG00000167779 1.9950705 -0.0139422 3.449192 6.745263 0.0097139 0.4706926 ENSG00000167779 IGFBP6 insulin like growth factor binding protein 6 12 53097436 53102345 protein_coding HGNC:5475 1.7485600 2.6546296 3.5589073 0.1145643 3.7393194 4.3908570 4.5339119 1.6968529 2.6058176 2.2217679 4.2605139 2.4934519
ENSG00000284218 2.5210263 -4.7575956 3.556149 6.967859 0.0097262 0.4706926 ENSG00000284218 NPIPB5 nuclear pore complex interacting protein family member B5 HG926_PATCH 568655 591235 protein_coding HGNC:37233 2.1957287 -13.2877124 -13.2877124 -13.2877124 2.8014143 3.0860733 2.4760319 -13.2877124 -13.2877124 -13.2877124 2.8091882 0.1958225
ENSG00000155980 -0.7880497 -1.6434028 6.233959 6.888956 0.0097586 0.4706926 ENSG00000155980 KIF5A kinesin family member 5A 12 57546026 57586633 protein_coding HGNC:6323 3.7057047 3.7293829 3.6376437 4.6625047 2.8488290 3.0355639 4.2013836 1.3761609 2.8259645 2.2759972 3.4940154 4.0018587
ENSG00000156113 -1.7039467 -1.1443363 4.492796 6.884046 0.0097950 0.4706926 ENSG00000156113 KCNMA1 potassium calcium-activated channel subfamily M alpha 1 10 76869601 77638369 protein_coding HGNC:6284 3.9195372 4.1766118 3.6372863 2.2538628 0.1859021 2.5038250 0.9544740 2.7459356 1.6077469 2.2862898 1.5438710 3.6561667
ENSG00000230224 -1.3101467 0.9912735 3.936546 6.758667 0.0098767 0.4724805 ENSG00000230224 PHB1P9 10 100248271 100249095 processed_pseudogene HGNC:39288 4.0453682 4.7611001 4.2584218 3.8609147 1.0299694 3.1691105 3.6617931 5.2431337 5.2187053 5.2309712 2.9814437 4.2723198
outPath = "output/day22/DEG"
Test = "day22.SCN2A.vs.WT"
qlf = glmQLFTest(fit, coef=2)
sig.gene.summary(qlf)
##        q0.005 q0.01 q0.05  q0.2 p0.01
## Down        0     0     0     0    80
## NotSig  10620 10620 10620 10620 10420
## Up          0     0     0     0   120
deg = attach_annotations_by_p(qlf, 0.01)
maxAveTPM = data.frame(maxAveTPM = apply(deg[,c("SCN2A", "WT")], 1, max))
deg = cbind(deg, maxAveTPM)
# deg %>%
#   kbl() %>%
#   kable_styling(bootstrap_options = c("striped", "hover", "condensed")) %>%
#   scroll_box(width = "100%", height = "300px")

write.table(deg, file=paste(outPath,ExperimentName,Test,"txt", sep="."), quote=FALSE, row.names=TRUE, col.names=TRUE, sep="\t")

#MvsA plot
ggplot(data = as.data.frame(topTags(qlf, n=NULL)) %>% arrange(desc(PValue)), aes(x=logCPM, y=logFC)) +
  geom_point(aes(color=PValue<0.01)) +
  scale_color_manual(values = xgfs_normal12[c(13,2)]) +
  theme_minimal()

#Volcano plot
ggplot(data = as.data.frame(topTags(qlf, n=NULL)) %>% arrange(desc(PValue)), aes(x=logFC, y=-log10(PValue))) + 
  geom_point(aes(color=PValue<0.01)) +
  scale_color_manual(values = xgfs_normal12[c(13,2)]) +
  theme_minimal()

SCN2AUp = row.names(deg[deg[,"logFC"] > 0 & deg[,"maxAveTPM"] > log2(0.1),])
SCN2ADown = row.names(deg[deg[,"logFC"] < 0 & deg[,"maxAveTPM"] > log2(0.1),])
Test = "day22.CHD2.vs.WT"
qlf = glmQLFTest(fit, coef=3)
sig.gene.summary(qlf)
##        q0.005 q0.01 q0.05  q0.2 p0.01
## Down        0     0     0    11   119
## NotSig  10620 10620 10620 10600 10438
## Up          0     0     0     9    63
deg = attach_annotations_by_p(qlf, 0.01)
maxAveTPM = data.frame(maxAveTPM = apply(deg[,c("CHD2", "WT")], 1, max))
deg = cbind(deg, maxAveTPM)
# deg %>%
#   kbl() %>%
#   kable_styling(bootstrap_options = c("striped", "hover", "condensed")) %>%
#   scroll_box(width = "100%", height = "300px")

write.table(deg, file=paste(outPath,ExperimentName,Test,"txt", sep="."), quote=FALSE, row.names=TRUE, col.names=TRUE, sep="\t")

#MvsA plot
ggplot(data = as.data.frame(topTags(qlf, n=NULL)) %>% arrange(desc(PValue)), aes(x=logCPM, y=logFC)) +
  geom_point(aes(color=PValue<0.01)) +
  scale_color_manual(values = xgfs_normal12[c(13,2)]) +
  theme_minimal()

#Volcano plot
ggplot(data = as.data.frame(topTags(qlf, n=NULL)) %>% arrange(desc(PValue)), aes(x=logFC, y=-log10(PValue))) + 
  geom_point(aes(color=PValue<0.01)) +
  scale_color_manual(values = xgfs_normal12[c(13,2)]) +
  theme_minimal()

CHD2Up = row.names(deg[deg[,"logFC"] > 0 & deg[,"maxAveTPM"] > log2(0.1),])
CHD2Down = row.names(deg[deg[,"logFC"] < 0 & deg[,"maxAveTPM"] > log2(0.1),])
Test = "day22"
venn.diagram(list(CHD2 = CHD2Up, SCN2A = SCN2AUp), filename = paste(outPath,ExperimentName,Test,"up.png", sep="."), imagetype = "png", main = paste(Test, "up regulated", sep = " "), col = xgfs_normal12[1:2])
## [1] 1
venn.diagram(list(CHD2 = CHD2Down, SCN2A = SCN2ADown), filename = paste(outPath,ExperimentName,Test,"down.png", sep="."), imagetype = "png", main = paste(Test, "down regulated", sep = " "), col = xgfs_normal12[1:2])
## [1] 1
SCN2AUp.d22 = SCN2AUp
SCN2ADown.d22 = SCN2ADown
CHD2Up.d22 = CHD2Up
CHD2Down.d22 = CHD2Down
Venn diagram up regulated
Venn diagram up regulated
Venn diagram down regulated
Venn diagram down regulated

Note:

1d. Day 28 of transdifferentiation

Test the differences between WT, SCN2A and CHD2 at 28 days of transdifferentiation.

fit = test_a_diff_state(diffState = "day_28", countTable = counts.current)
qlf = glmQLFTest(fit, coef=2:3)
sig.gene.summary(qlf)
##        q0.005 q0.01 q0.05  q0.2 p0.01
## NotSig  12565 12564 12562 12465 12194
## Sig         0     1     3   100   371
d28.genes.expressed = rownames(qlf$table)
attach_annotations_by_p(qlf, 0.01) %>%
  kbl() %>%
  kable_styling(bootstrap_options = c("striped", "hover", "condensed")) %>%
  scroll_box(width = "100%", height = "300px")
logFC.fSCN2A logFC.fCHD2 logCPM F PValue FDR ensembl_gene_id hgnc_symbol entrezgene_description chromosome_name start_position end_position gene_biotype hgnc_id CON_2_d28 CON_3_d28 SCN2A_1_d28 SCN2A_2_d28 SCN2A_3_d28 CHD2_1_d28 CHD2 SCN2A WT
ENSG00000254875 -7.0121747 4.5922599 6.182148 183.160652 0.0000006 0.0071402 ENSG00000254875 HSCHR6_MHC_QBL_CTG1 3377039 3395179 protein_coding -13.2877124 2.9947996 -13.2877124 -13.2877124 -13.2877124 6.5582973 6.5582973 -13.2877124 1.9948179
ENSG00000125618 4.8072272 4.6335146 6.589851 52.019731 0.0000085 0.0459550 ENSG00000125618 PAX8 paired box 8 2 113215997 113278921 protein_coding HGNC:8622 0.1328690 1.7446167 6.0542638 6.4813315 6.6035017 6.1229497 6.1229497 6.3982630 1.1530043
ENSG00000138161 -0.9064724 3.0801458 5.309977 49.680788 0.0000110 0.0459550 ENSG00000138161 CUZD1 CUB and zona pellucida like domains 1 10 122832158 122846175 protein_coding HGNC:17937 3.3457298 3.7919178 1.7969690 2.9436127 2.6307857 6.4545832 6.4545832 2.5328887 3.5860047
ENSG00000111452 6.4916953 3.7957978 4.779534 34.512319 0.0000262 0.0823220 ENSG00000111452 ADGRD1 adhesion G protein-coupled receptor D1 12 130953907 131141469 protein_coding HGNC:19893 0.7884084 -13.2877124 5.7878978 2.6261840 5.6870835 0.4612079 0.4612079 5.2345082 -0.2115081
ENSG00000228299 11.5437795 11.4795632 7.962628 44.496164 0.0000358 0.0857995 ENSG00000228299 HLA-C major histocompatibility complex, class I, C HSCHR6_MHC_DBB_CTG1 2526549 2529920 protein_coding HGNC:4933 -13.2877124 -13.2877124 7.6348425 8.2729494 9.0187454 8.8306809 8.8306809 8.4189333 -13.2877124
ENSG00000145423 4.7692961 1.1610501 7.051131 35.179087 0.0000461 0.0857995 ENSG00000145423 SFRP2 secreted frizzled related protein 2 4 153780591 153789083 protein_coding HGNC:10777 2.8773589 0.8702653 6.7661901 6.5944726 7.7625395 3.4768823 3.4768823 7.1382993 2.1978711
ENSG00000079689 -3.4914999 -2.5150197 5.723437 34.923849 0.0000478 0.0857995 ENSG00000079689 SCGN secretagogin, EF-hand calcium binding protein 6 25652201 25701783 protein_coding HGNC:16941 6.7792409 6.1970074 3.8023501 2.3278561 4.1795107 4.0820088 4.0820085 3.6280772 6.5172987
ENSG00000197915 3.3699608 2.1141694 8.645960 32.864357 0.0000597 0.0938171 ENSG00000197915 HRNR hornerin 1 152212076 152224193 protein_coding HGNC:20846 2.2521068 2.9636541 5.5176265 5.8548600 6.6588550 4.7988627 4.7988627 6.0926223 2.6513105
ENSG00000169429 0.6602023 -3.8122724 7.300495 30.531994 0.0000805 0.1024432 ENSG00000169429 CXCL8 C-X-C motif chemokine ligand 8 4 73740519 73743716 protein_coding HGNC:6025 6.7515008 6.1921794 7.1615457 7.4836679 7.4201490 4.0877764 4.0877768 7.3617102 6.4987776
ENSG00000131016 1.7062621 -1.6240596 6.241831 30.456414 0.0000815 0.1024432 ENSG00000131016 AKAP12 A-kinase anchoring protein 12 6 151239967 151358559 protein_coding HGNC:370 2.4868335 2.0798290 4.2061944 3.9712598 4.5322602 0.9033599 0.9033599 4.2550414 2.2976366
ENSG00000013297 2.5040431 -1.1361923 5.802945 29.571010 0.0000925 0.1057115 ENSG00000013297 CLDN11 claudin 11 3 170418868 170454733 protein_coding HGNC:8514 3.2364012 2.6385331 5.7834774 5.0491519 5.8808174 1.8976354 1.8976354 5.6158399 2.9682183
ENSG00000277221 0.3011525 3.3632202 6.504289 27.697132 0.0001201 0.1179329 ENSG00000277221 LRRC37A2 leucine rich repeat containing 37A HSCHR17_2_CTG5 1030000 1075355 protein_coding HGNC:32404 3.1883125 1.9464734 3.1040707 3.5844660 2.5896520 6.2078065 6.2078065 3.1491413 2.6970792
ENSG00000182752 2.2850058 -0.0288724 7.671587 27.535523 0.0001220 0.1179329 ENSG00000182752 PAPPA pappalysin 1 9 116153791 116402321 protein_coding HGNC:8602 3.9613796 2.4588654 5.0680160 5.0802626 5.6722293 2.5658087 2.5658087 5.3021798 3.3974751
ENSG00000268173 0.0000000 9.1790021 3.810609 49.684145 0.0001353 0.1184441 ENSG00000268173 19 18153158 18178117 protein_coding -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 3.8130189 3.8130187 -13.2877124 -13.2877124
ENSG00000276458 7.0462564 8.4038359 4.090972 31.089479 0.0001414 0.1184441 ENSG00000276458 LENG8 leukocyte receptor cluster member 8 HSCHR19LRC_COX1_CTG3_1 355231 368530 protein_coding HGNC:15500 -13.2877124 -13.2877124 1.9837714 2.0199634 2.1902953 3.3069647 3.3069647 2.0675217 -13.2877124
ENSG00000105647 -0.1787816 -8.8832093 5.591344 24.539231 0.0001930 0.1206367 ENSG00000105647 PIK3R2 phosphoinositide-3-kinase regulatory subunit 2 19 18153163 18170540 protein_coding HGNC:8980 3.5666737 4.2211849 3.6836972 3.3098511 4.4880511 -13.2877124 -13.2877124 3.9135252 3.9307317
ENSG00000106483 5.8656951 3.8697308 5.524786 21.135610 0.0002003 0.1206367 ENSG00000106483 SFRP4 secreted frizzled related protein 4 7 37905932 38025695 protein_coding HGNC:10778 -0.2173398 -13.2877124 4.2865125 4.3716741 5.7044386 2.8836343 2.8836343 4.9442494 -1.2171721
ENSG00000227715 -10.7421649 -13.5654075 9.002246 18.278671 0.0002109 0.1206367 ENSG00000227715 HLA-A major histocompatibility complex, class I, A HSCHR6_MHC_MCF_CTG1 1286636 1289979 protein_coding HGNC:4931 0.1153289 11.2405592 0.6792643 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -0.9055180 10.2412050
ENSG00000237988 -3.3670828 -7.8174545 3.734560 20.477564 0.0002122 0.1206367 ENSG00000237988 OR2I1P olfactory receptor family 2 subfamily I member 1 pseudogene 6 29550407 29557773 protein_coding HGNC:8258 2.5579298 2.4643452 -2.1844770 0.1685933 -1.5734712 -13.2877124 -13.2877124 -0.8365417 2.5118962
ENSG00000163347 4.3029826 2.5852993 4.433153 21.438239 0.0002248 0.1206367 ENSG00000163347 CLDN1 claudin 1 3 190305707 190322446 protein_coding HGNC:2032 -2.0925186 -0.4282397 4.0492864 2.8491074 3.1531990 1.6666698 1.6666698 3.4443955 -1.0326263
ENSG00000166833 -1.6282638 -2.3839526 6.804129 23.529549 0.0002271 0.1206367 ENSG00000166833 NAV2 neuron navigator 2 11 19350724 20121601 protein_coding HGNC:15997 3.5909468 4.4672501 2.7269199 3.8148196 4.3296342 1.7311298 1.7311298 3.7655399 4.0946342
ENSG00000172156 3.4411629 1.2905074 8.029249 23.470661 0.0002291 0.1206367 ENSG00000172156 CCL11 C-C motif chemokine ligand 11 17 34285742 34288334 protein_coding HGNC:10610 5.8218930 5.1823521 9.1563066 8.0250006 9.7096964 6.9182779 6.9182777 9.1193033 5.5372743
ENSG00000116147 -3.0957394 -2.4548814 3.918697 21.176913 0.0002303 0.1206367 ENSG00000116147 TNR tenascin R 1 175315194 175743595 protein_coding HGNC:11953 3.1628089 1.6274107 -2.1033701 -0.6845033 -0.7284620 -1.3140796 -1.3140796 -1.0404960 2.5903981
ENSG00000267954 0.0536594 2.2384151 5.595008 23.442089 0.0002329 0.1206367 ENSG00000267954 HSCHR22_1_CTG7 18645 20320 protein_coding 5.6632429 5.8761516 5.8843942 6.2668160 5.5872645 8.0752027 8.0752027 5.9397741 5.7736211
ENSG00000148600 -2.5348499 -1.7710111 5.068123 23.033645 0.0002518 0.1206367 ENSG00000148600 CDHR1 cadherin related family member 1 10 84194537 84219621 protein_coding HGNC:14550 2.9229386 4.4511508 1.3472223 1.8485987 1.9017111 1.4551349 1.4551349 1.7198817 3.8805866
ENSG00000143333 -2.2245681 -1.4758977 5.523720 22.953770 0.0002549 0.1206367 ENSG00000143333 RGS16 regulator of G protein signaling 16 1 182598623 182604389 protein_coding HGNC:9997 5.1235423 5.2739998 3.1913577 2.6000925 3.3865509 3.7762168 3.7762168 3.0962659 5.2007315
ENSG00000167194 -1.2002195 -2.0670899 7.516941 22.611926 0.0002646 0.1206367 ENSG00000167194 C16orf92 chromosome 16 open reading frame 92 16 30023198 30027736 protein_coding HGNC:26346 8.6684811 8.9463685 7.5929641 7.6744114 7.8941213 6.7989058 6.7989059 7.7261820 8.8141053
ENSG00000235952 -5.8775361 -11.7031136 10.488666 22.289832 0.0002799 0.1206367 ENSG00000235952 HSCHR6_MHC_QBL_CTG1 1197034 1198026 unprocessed_pseudogene 7.9166977 13.4670368 7.0384190 6.7123820 5.8129833 0.5766479 0.5766479 6.6075167 12.4974991
ENSG00000180616 -1.7725384 0.2549073 6.347463 21.435911 0.0003272 0.1206367 ENSG00000180616 SSTR2 somatostatin receptor 2 17 73165010 73176633 protein_coding HGNC:11331 3.5762648 4.0736775 2.5582490 2.1430107 1.5849154 4.1408043 4.1408043 2.1491133 3.8463031
ENSG00000159307 -2.6159727 1.4912410 4.278309 19.011090 0.0003309 0.1206367 ENSG00000159307 SCUBE1 signal peptide, CUB domain and EGF like domain containing 1 22 43197280 43343372 protein_coding HGNC:13441 1.3198561 0.0996601 1.2209812 -1.6778780 -1.0986940 2.4291052 2.4291052 0.0521988 0.8350889
ENSG00000230341 5.1015599 9.0032184 3.883798 22.349621 0.0003406 0.1206367 ENSG00000230341 PPP1R18 protein phosphatase 1 regulatory subunit 18 HSCHR6_MHC_APD_CTG1 2005896 2017402 protein_coding HGNC:29413 -13.2877124 -13.2877124 -13.2877124 0.5545014 0.6261223 3.8210185 3.8210185 0.0058412 -13.2877124
ENSG00000170961 2.7993306 1.6887002 5.894506 21.188716 0.0003434 0.1206367 ENSG00000170961 HAS2 hyaluronan synthase 2 8 121612116 121641440 protein_coding HGNC:4819 1.8321374 1.2487953 3.9707962 4.5258680 4.8856972 3.3436489 3.3436489 4.5084009 1.5697516
ENSG00000069702 2.7142275 0.6896955 6.440938 21.123041 0.0003451 0.1206367 ENSG00000069702 TGFBR3 transforming growth factor beta receptor 3 1 91680343 91906335 protein_coding HGNC:11774 2.0582846 1.1377311 4.6742223 5.7590314 5.1225048 4.2675498 4.2675498 5.2545318 1.6702181
ENSG00000086062 2.1244917 1.3882162 7.183830 21.030299 0.0003497 0.1206367 ENSG00000086062 B4GALT1 beta-1,4-galactosyltransferase 1 9 33100493 33167336 protein_coding HGNC:924 3.6428483 3.2630284 5.4445310 5.6386486 6.0056036 4.9308138 4.9308140 5.7153149 3.4654012
ENSG00000134802 2.5391280 -0.9483755 5.655485 20.973176 0.0003566 0.1206367 ENSG00000134802 SLC43A3 solute carrier family 43 member 3 11 57406954 57427580 protein_coding HGNC:17466 3.6604881 1.7602112 5.9839448 5.1814551 6.3856815 3.4007382 3.4007382 5.9322745 3.0029199
ENSG00000180044 -2.7110914 -3.0542803 5.823926 20.980676 0.0003594 0.1206367 ENSG00000180044 C3orf80 chromosome 3 open reading frame 80 3 160225422 160228213 protein_coding HGNC:40048 5.6908018 7.6089526 4.8273842 3.2291590 3.8537595 3.9942003 3.9942004 4.1217415 6.9476262
ENSG00000122641 2.0536652 -0.9664633 6.933795 20.738785 0.0003689 0.1206367 ENSG00000122641 INHBA inhibin subunit beta A 7 41667168 41705834 protein_coding HGNC:6066 3.8218046 3.3648458 5.2025293 5.8375949 6.7014600 2.0030463 2.0030463 6.0449960 3.6113421
ENSG00000185070 2.4954760 2.1857797 6.773473 20.556458 0.0003822 0.1206367 ENSG00000185070 FLRT2 fibronectin leucine rich transmembrane protein 2 14 85530144 85654428 protein_coding HGNC:3761 5.0569697 3.6850817 6.5616874 6.4934534 6.9772845 5.8396490 5.8396490 6.6937840 4.5282981
ENSG00000206538 1.8136773 -0.4990604 5.606004 20.556165 0.0003833 0.1206367 ENSG00000206538 VGLL3 vestigial like family member 3 3 86876388 86991149 protein_coding HGNC:24327 3.8996678 2.2143602 5.7701784 5.1996569 3.4178610 0.4697558 0.4697558 5.0876403 3.2902657
ENSG00000126500 -2.0698348 -1.3418486 6.103639 20.563056 0.0003840 0.1206367 ENSG00000126500 FLRT1 fibronectin leucine rich transmembrane protein 1 11 64035931 64119173 protein_coding HGNC:3760 5.0071253 4.9236354 2.6047277 3.4701005 2.7796684 3.6864677 3.6864677 3.0018838 4.9659843
ENSG00000237724 5.4105337 8.9025091 3.840826 22.052063 0.0004062 0.1218709 ENSG00000237724 HSPA1A heat shock protein family A (Hsp70) member 1A HSCHR6_MHC_COX_CTG1 3292715 3295197 protein_coding HGNC:5232 -13.2877124 -13.2877124 1.6035316 1.7373662 -13.2877124 4.6786534 4.6786534 1.0870602 -13.2877124
ENSG00000158169 -2.1381657 -0.7360423 8.708572 20.200192 0.0004074 0.1218709 ENSG00000158169 FANCC FA complementation group C 9 95099054 95426796 protein_coding HGNC:3584 7.4114142 8.4572073 6.3867768 5.9008821 5.4700684 7.4224607 7.4224607 5.9677393 8.0270663
ENSG00000164694 4.4223485 2.9717118 7.536335 19.950492 0.0004305 0.1258023 ENSG00000164694 FNDC1 fibronectin type III domain containing 1 6 159169400 159272108 protein_coding HGNC:21184 1.9522098 -0.8750182 4.9745284 5.6220783 6.1281218 4.1805780 4.1805780 5.6499465 1.1423860
ENSG00000144802 1.3447104 -1.8565754 5.349349 19.801511 0.0004415 0.1260886 ENSG00000144802 NFKBIZ NFKB inhibitor zeta 3 101827991 101861022 protein_coding HGNC:29805 3.0267806 2.6910562 4.4138584 4.8722912 4.3788649 1.6165525 1.6165525 4.5730934 2.8686621
ENSG00000157551 2.1424971 -2.5647338 5.170742 19.476830 0.0004729 0.1320398 ENSG00000157551 KCNJ15 potassium inwardly rectifying channel subfamily J member 15 21 38155549 38307357 protein_coding HGNC:6261 4.0083727 2.7244261 5.0102479 6.7824090 5.7506195 0.2365453 0.2365453 6.0308410 3.5047537
ENSG00000164125 3.7660812 4.0053393 5.485989 18.943576 0.0005044 0.1377871 ENSG00000164125 GASK1B golgi associated kinase 1B 4 158124474 158173318 protein_coding HGNC:25312 0.5055922 -2.4421518 3.6209945 4.1191450 4.0030970 4.2955801 4.2955801 3.9296433 -0.3185822
ENSG00000115380 4.5286147 2.0999007 7.341329 18.388430 0.0005854 0.1550487 ENSG00000115380 EFEMP1 EGF containing fibulin extracellular matrix protein 1 2 55865967 55924139 protein_coding HGNC:3218 2.9205113 -1.6300679 7.1176894 7.5453971 6.9379662 4.8278338 4.8278338 7.2233527 1.9807960
ENSG00000163739 2.2643339 0.4134269 9.266314 18.282094 0.0005923 0.1550487 ENSG00000163739 CXCL1 C-X-C motif chemokine ligand 1 4 73869393 73871308 protein_coding HGNC:4602 9.0275670 7.5182832 10.6206762 10.9366629 10.8555784 8.8870610 8.8870610 10.8104226 8.4618997
ENSG00000137313 0.0000000 8.5975565 3.322775 29.457464 0.0006226 0.1596511 ENSG00000137313 TRIM26 tripartite motif containing 26 HSCHR6_MHC_QBL_CTG1 1439551 1468529 protein_coding HGNC:12962 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 3.9431950 3.9431946 -13.2877124 -13.2877124
ENSG00000196141 2.0537504 1.2569002 6.845394 17.487421 0.0006989 0.1662178 ENSG00000196141 SPATS2L spermatogenesis associated serine rich 2 like 2 200305881 200482264 protein_coding HGNC:24574 4.1443738 3.9580548 7.2846109 7.5552514 6.9414392 5.8029078 5.8029079 7.2820356 4.0542199
ENSG00000154175 3.1930478 1.3695063 7.140718 17.483988 0.0007004 0.1662178 ENSG00000154175 ABI3BP ABI family member 3 binding protein 3 100749156 100993515 protein_coding HGNC:17265 5.0355052 4.8545220 6.7815164 6.1344509 8.3601698 5.7517444 5.7517443 7.4061592 4.9478499
ENSG00000142319 -6.5097998 1.9054088 3.718586 22.927027 0.0007126 0.1662178 ENSG00000142319 SLC6A3 solute carrier family 6 member 3 5 1392794 1445440 protein_coding HGNC:11049 2.3974588 -13.2877124 -13.2877124 -13.2877124 -13.2877124 3.4565652 3.4565652 -13.2877124 1.3974859
ENSG00000128342 -0.0548543 -2.9059821 6.130639 17.394059 0.0007129 0.1662178 ENSG00000128342 LIF LIF interleukin 6 family cytokine 22 30240453 30246759 protein_coding HGNC:6596 5.2974121 5.5126231 4.2415054 5.8196506 6.0525775 3.2133448 3.2133448 5.5624496 5.4090269
ENSG00000138356 3.8537815 1.2971622 5.192066 17.255155 0.0007143 0.1662178 ENSG00000138356 AOX1 aldehyde oxidase 1 2 200586014 200677064 protein_coding HGNC:553 3.6942816 1.3778312 6.1741552 3.6274724 4.3047078 1.1125026 1.1125026 5.1200888 2.9582304
ENSG00000149968 -2.8796836 -4.7003720 7.347703 17.272519 0.0007323 0.1672939 ENSG00000149968 MMP3 matrix metallopeptidase 3 11 102835801 102843609 protein_coding HGNC:7173 7.3744286 8.2508388 6.1691607 3.2723210 4.2677025 3.1907157 3.1907157 5.0716209 7.8781852
ENSG00000242265 1.5026720 0.0914741 6.786674 16.979032 0.0007785 0.1746747 ENSG00000242265 PEG10 paternally expressed 10 7 94656325 94669695 protein_coding HGNC:14005 4.1693309 3.3218285 5.4600824 4.6737546 6.0923629 3.7981058 3.7981055 5.5212047 3.8069375
ENSG00000205238 -0.5812215 1.3718476 7.584824 16.893938 0.0007928 0.1747576 ENSG00000205238 SPDYE2 speedy/RINGO cell cycle regulator family member E2 7 102551226 102563538 protein_coding HGNC:33841 7.2159333 6.9211719 6.1338332 6.7098410 6.8728184 8.5102757 8.5102757 6.6053571 7.0760674
ENSG00000124875 1.6319297 -2.4670129 7.231044 16.747279 0.0008183 0.1760930 ENSG00000124875 CXCL6 C-X-C motif chemokine ligand 6 4 73836640 73849064 protein_coding HGNC:10643 6.8191241 4.6767856 8.2982707 7.8374648 8.0170988 4.4060707 4.4060706 8.0635240 6.1136859
ENSG00000185215 2.6010876 0.6773415 5.430722 16.751125 0.0008269 0.1760930 ENSG00000185215 TNFAIP2 TNF alpha induced protein 2 14 103121476 103137439 protein_coding HGNC:11895 2.4381821 2.5502892 5.9721791 4.7478481 6.2671158 4.4733624 4.4733622 5.7958345 2.4953242
ENSG00000169594 1.9779217 1.4058107 6.310153 16.381153 0.0008887 0.1811391 ENSG00000169594 BNC1 basonuclin zinc finger protein 1 15 83255884 83284664 protein_coding HGNC:1081 2.8129241 2.4356267 4.8575025 5.0712348 4.6026261 4.0220806 4.0220806 4.8564169 2.6365743
ENSG00000138821 2.3207975 1.0260374 5.440381 16.339665 0.0009037 0.1811391 ENSG00000138821 SLC39A8 solute carrier family 39 member 8 4 102251080 102431258 protein_coding HGNC:20862 1.8532436 2.0936765 3.9947339 4.2329856 4.9446340 3.0866613 3.0866613 4.4493664 1.9784629
ENSG00000015568 -3.6060970 -0.2875283 4.617021 14.974118 0.0009176 0.1811391 ENSG00000015568 RGPD5 RANBP2 like and GRIP domain containing 5 2 109792758 109857705 protein_coding HGNC:32418 2.1141844 3.9733945 1.1179915 -13.2877124 0.1992847 2.9902126 2.9902126 0.1456449 3.3246012
ENSG00000116016 2.3095346 0.3575401 8.804888 16.152879 0.0009329 0.1811391 ENSG00000116016 EPAS1 endothelial PAS domain protein 1 2 46293667 46386697 protein_coding HGNC:3374 5.4748815 4.5477027 7.5418919 7.1361455 7.6765680 5.5806374 5.5806373 7.4692534 5.0845282
ENSG00000141753 2.6893559 2.6671284 9.552985 16.049727 0.0009548 0.1811391 ENSG00000141753 IGFBP4 insulin like growth factor binding protein 4 17 40443450 40457725 protein_coding HGNC:5473 6.7534944 5.2279505 8.7544333 9.1173742 9.2171389 8.9728760 8.9728761 9.0429567 6.1836175
ENSG00000180447 2.9452056 1.6111727 5.474220 16.083680 0.0009593 0.1811391 ENSG00000180447 GAS1 growth arrest specific 1 9 86944362 86947506 protein_coding HGNC:4165 2.1384128 0.1308584 4.3931200 4.5783845 4.7500910 3.1893567 3.1893567 4.5812084 1.4588334
ENSG00000112208 1.8040228 0.4075952 9.137343 16.016125 0.0009620 0.1811391 ENSG00000112208 BAG2 BAG cochaperone 2 6 57172326 57189833 protein_coding HGNC:938 5.2202973 4.9550480 6.5052041 6.9613571 7.4226090 5.5738679 5.5738680 7.0112960 5.0937600
ENSG00000128052 4.4637637 6.2905840 3.897693 14.655282 0.0009659 0.1811391 ENSG00000128052 KDR kinase insert domain receptor 4 55078481 55125595 protein_coding HGNC:6307 -2.8115738 -13.2877124 1.0671782 1.7620609 -0.8152094 2.8557155 2.8557155 1.0132786 -3.8105613
ENSG00000136244 1.9304726 -1.8594792 5.253945 15.760900 0.0010272 0.1853222 ENSG00000136244 IL6 interleukin 6 7 22725884 22732002 protein_coding HGNC:6018 5.5567604 4.4561622 7.0166717 5.9759359 7.4999600 3.3740245 3.3740240 6.9597829 5.1089635
ENSG00000273608 -1.6437121 -3.3734568 4.729052 15.804270 0.0010289 0.1853222 ENSG00000273608 SRCIN1 SRC kinase signaling inhibitor 1 HSCHR17_7_CTG4 2565317 2641249 protein_coding HGNC:29506 2.2912331 3.5177868 2.0226263 1.3376426 1.7953655 1.1850241 1.1850241 1.7458315 3.0311128
ENSG00000254245 -1.7027613 0.9112202 5.727044 15.721758 0.0010442 0.1853222 ENSG00000254245 PCDHGA3 protocadherin gamma subfamily A, 3 5 141343829 141512975 protein_coding HGNC:8701 3.8841005 3.3608310 2.4935946 2.7080722 2.4050448 4.6397127 4.6397127 2.5412499 3.6460608
ENSG00000123610 2.8170321 1.6501504 5.869605 15.682697 0.0010472 0.1853222 ENSG00000123610 TNFAIP6 TNF alpha induced protein 6 2 151357592 151380046 protein_coding HGNC:11898 3.8361455 2.4576673 6.4446871 5.6580282 6.6096417 5.0650568 5.0650568 6.2931199 3.3056401
ENSG00000163734 2.0102109 -0.7230929 6.727039 15.390757 0.0011111 0.1895901 ENSG00000163734 CXCL3 C-X-C motif chemokine ligand 3 4 74036589 74038807 protein_coding HGNC:4604 6.1078351 4.5120304 7.7102145 7.8885862 7.3671386 4.8101287 4.8101289 7.6712029 5.5201695
ENSG00000120738 2.1117388 -0.2529367 7.571427 15.386449 0.0011116 0.1895901 ENSG00000120738 EGR1 early growth response 1 5 138465479 138469303 protein_coding HGNC:3238 4.9497716 3.6583343 6.9348170 6.9895951 6.0871129 4.3002997 4.3002995 6.7252374 4.4439759
ENSG00000064666 2.1898197 1.3714629 5.633172 15.375409 0.0011221 0.1895901 ENSG00000064666 CNN2 calponin 2 19 1026586 1039068 protein_coding HGNC:2156 2.9458983 3.0010268 4.8167584 5.1674422 5.6662247 4.3801586 4.3801586 5.2593036 2.9737259
ENSG00000181291 -3.1283331 -1.0643656 4.428703 14.679201 0.0011317 0.1895901 ENSG00000181291 TMEM132E transmembrane protein 132E 17 34579487 34639318 protein_coding HGNC:26991 2.9049160 3.4228733 0.5357872 -2.4316293 -0.2677829 2.0844780 2.0844780 -0.2829745 3.1870156
ENSG00000170345 3.2295707 2.5024718 4.125979 14.749522 0.0011489 0.1899474 ENSG00000170345 FOS Fos proto-oncogene, AP-1 transcription factor subunit 14 75278826 75283190 protein_coding HGNC:3796 1.4022130 2.4452163 4.8342854 5.5194586 5.6297284 3.5944690 3.5944685 5.3681827 2.0159863
ENSG00000152766 5.7887437 0.7155386 6.832660 14.928486 0.0011913 0.1919141 ENSG00000152766 ANKRD22 ankyrin repeat domain 22 10 88819896 88851844 protein_coding HGNC:28321 0.9004584 -13.2877124 4.0716642 7.1644331 4.6353698 0.7531655 0.7531655 5.9473630 -0.0994643
ENSG00000184347 2.6359198 2.1071523 7.078170 15.077351 0.0011966 0.1919141 ENSG00000184347 SLIT3 slit guidance ligand 3 5 168661740 169301139 protein_coding HGNC:11087 2.8961472 1.3149934 4.9385105 4.9424729 5.6272155 4.5829774 4.5829774 5.2073785 2.3121380
ENSG00000272899 -2.0242414 -2.4542598 5.221560 15.104930 0.0012066 0.1919141 ENSG00000272899 SPMIP1 sperm microtubule inner protein 1 7 128866330 128872047 protein_coding HGNC:52392 3.7427934 4.5143232 1.5668707 2.0456799 2.8883571 1.7430733 1.7430733 2.2725766 4.1795304
ENSG00000162595 2.9245794 2.3912059 4.396579 14.733100 0.0012533 0.1947962 ENSG00000162595 DIRAS3 DIRAS family GTPase 3 1 68045886 68051717 protein_coding HGNC:687 0.8891674 1.4194990 3.9002453 3.9228181 4.7770304 3.9922858 3.9922858 4.2609085 1.1785655
ENSG00000122194 2.6413692 4.1938004 4.002102 14.180666 0.0012599 0.1947962 ENSG00000122194 PLG plasminogen 6 160702194 160754097 protein_coding HGNC:9071 1.9551900 2.6249527 5.4635894 5.5373713 3.5623135 6.6515499 6.6515499 5.0928627 2.3285938
ENSG00000088826 1.8881776 0.6517070 6.440265 14.822475 0.0012713 0.1947962 ENSG00000088826 SMOX spermine oxidase 20 4120980 4187747 protein_coding HGNC:15862 4.3472170 3.6039568 6.0898832 5.8180766 6.2586092 4.7739923 4.7739921 6.0667830 4.0229315
ENSG00000163661 2.4622247 -0.3310056 7.046678 14.739267 0.0012961 0.1958421 ENSG00000163661 PTX3 pentraxin 3 3 157436850 157443633 protein_coding HGNC:9692 5.0769891 3.2895005 7.5222687 6.4783175 7.0785211 4.2333123 4.2333121 7.0880086 4.4439978
ENSG00000205213 2.6022429 0.2031137 4.208690 14.617189 0.0013226 0.1958421 ENSG00000205213 LGR4 leucine rich repeat containing G protein-coupled receptor 4 11 27365961 27472790 protein_coding HGNC:13299 -0.3958717 -0.0533769 2.4498041 2.0665931 2.8976329 0.0159100 0.0159100 2.5113339 -0.2144846
ENSG00000238083 0.6135158 1.9042536 8.186428 14.614688 0.0013346 0.1958421 ENSG00000238083 LRRC37A2 leucine rich repeat containing 37A 17 46511508 46556910 protein_coding HGNC:32404 5.1844892 6.1822914 6.5680013 6.5996150 6.2024748 7.6977637 7.6977637 6.4676103 5.7679868
ENSG00000213024 1.6307818 0.5833265 6.914486 14.571709 0.0013492 0.1958421 ENSG00000213024 NUP62 nucleoporin 62 19 49906825 49929764 protein_coding HGNC:8066 5.0081204 4.0368524 5.1772530 5.8638187 5.8534301 4.7588321 4.7588319 5.6652014 4.6027241
ENSG00000081041 1.3661716 -0.3775781 6.028193 14.489944 0.0013777 0.1958421 ENSG00000081041 CXCL2 C-X-C motif chemokine ligand 2 4 74097040 74099196 protein_coding HGNC:4603 5.4424070 5.4720792 6.6541496 7.1245141 6.8574808 4.9700495 4.9700493 6.8916372 5.4573195
ENSG00000103512 3.0653226 -5.5118560 4.770406 14.374751 0.0014171 0.1958421 ENSG00000103512 NOMO1 NODAL modulator 1 16 14833721 14896157 protein_coding HGNC:30060 -13.2877124 1.5509972 3.8146197 3.8967648 2.7771440 -13.2877124 -13.2877124 3.5777593 0.5510464
ENSG00000173826 -1.5423445 1.4804385 4.208685 14.066244 0.0014300 0.1958421 ENSG00000173826 KCNH6 potassium voltage-gated channel subfamily H member 6 17 63523334 63548977 protein_coding HGNC:18862 2.3633480 2.7003556 0.7171743 1.5837087 1.0694712 4.3634885 4.3634885 1.1677895 2.5416700
ENSG00000143702 0.5638069 -2.9773738 5.773875 14.311479 0.0014392 0.1958421 ENSG00000143702 CEP170 centrosomal protein 170 1 243124428 243255793 protein_coding HGNC:28920 4.2496927 5.0712298 5.6117982 5.1360270 4.6790127 -0.0110979 -0.0110979 5.1922192 4.7181654
ENSG00000170356 3.7516354 0.9365562 4.896447 14.052389 0.0014722 0.1958421 ENSG00000170356 OR2A20P olfactory receptor family 2 subfamily A member 20 pseudogene 7 144250671 144251603 transcribed_unprocessed_pseudogene HGNC:15413 1.7632395 -13.2877124 4.2131104 4.8057144 3.7313378 1.3660189 1.3660189 4.3170280 0.7632824
ENSG00000196352 2.2476741 0.5356302 6.287182 14.186019 0.0014857 0.1958421 ENSG00000196352 CD55 CD55 molecule (Cromer blood group) 1 207321519 207386804 protein_coding HGNC:2665 4.3608856 3.4698013 6.2941421 5.7961198 6.7700294 4.6170816 4.6170816 6.3409126 3.9830748
ENSG00000148926 1.4541779 -1.0805283 5.968962 14.177343 0.0014878 0.1958421 ENSG00000148926 ADM adrenomedullin 11 10305073 10307397 protein_coding HGNC:259 4.8455845 4.4162206 5.6631028 6.6003619 6.2023147 3.5886233 3.5886235 6.2051348 4.6468170
ENSG00000248288 3.9964976 0.3041322 3.297507 12.420461 0.0014946 0.1958421 ENSG00000248288 5 65209921 65210948 processed_pseudogene 0.6944078 0.7781488 4.4307565 4.8287570 5.7119399 1.1407630 1.1407630 5.0931330 0.7368862
ENSG00000138061 1.9047940 0.1898090 6.206006 14.158414 0.0014950 0.1958421 ENSG00000138061 CYP1B1 cytochrome P450 family 1 subfamily B member 1 2 38066973 38109902 protein_coding HGNC:2597 3.3911088 2.4345420 5.1471204 4.7310654 5.0085658 2.8608500 2.8608500 4.9724448 2.9906948
ENSG00000133687 5.2569103 4.7838382 3.877434 12.996444 0.0015113 0.1958421 ENSG00000133687 TMTC1 transmembrane O-mannosyltransferase targeting cadherins 1 12 29500840 29784759 protein_coding HGNC:24099 1.9557071 -13.2877124 2.4090523 1.4661666 2.2115876 1.4519960 1.4519960 2.0824720 0.9557443
ENSG00000275331 4.4108891 5.1740323 4.078997 12.351034 0.0015132 0.1958421 ENSG00000275331 ABCC6 ATP binding cassette subfamily C member 6 HSCHR16_1_CTG1 1806848 1881517 protein_coding HGNC:57 -13.2877124 -1.8996789 2.4167063 1.6912943 0.5166072 2.4891385 2.4891385 1.7369015 -2.8991407
ENSG00000060718 3.7044696 -5.2413786 5.087007 13.976560 0.0015402 0.1958421 ENSG00000060718 COL11A1 collagen type XI alpha 1 chain 1 102876467 103108872 protein_coding HGNC:2186 -0.4326103 1.6653396 2.2968805 3.9771542 4.5791042 -13.2877124 -13.2877124 3.8928867 0.9682021
ENSG00000117971 -1.8819403 -0.9568915 5.340190 14.081617 0.0015430 0.1958421 ENSG00000117971 CHRNB4 cholinergic receptor nicotinic beta 4 subunit 15 78624111 78727754 protein_coding HGNC:1964 4.2567584 6.2022660 3.4987233 4.5974932 2.5271554 3.8404017 3.8404018 3.7823173 5.5352586
ENSG00000075420 1.5908349 0.5924912 6.949672 13.932264 0.0015796 0.1984714 ENSG00000075420 FNDC3B fibronectin type III domain containing 3B 3 172039578 172401669 protein_coding HGNC:24670 3.7347495 4.1189710 4.7986286 6.0942931 5.4675669 4.5958737 4.5958736 5.5484641 3.9396131
ENSG00000162407 1.7045327 2.2767233 6.614886 13.755994 0.0016529 0.2056263 ENSG00000162407 PLPP3 phospholipid phosphatase 3 1 56494761 56645301 protein_coding HGNC:9229 3.6026154 4.3403152 4.8906317 4.9765660 6.3495532 6.5789260 6.5789260 5.5718270 4.0181116
ENSG00000173376 1.5098533 1.7240439 5.631778 13.728287 0.0016701 0.2057335 ENSG00000173376 NDNF neuron derived neurotrophic factor 4 121035613 121073021 protein_coding HGNC:26256 2.7022960 2.9590490 4.6115748 4.3528135 4.3872314 4.6168512 4.6168512 4.4551781 2.8363768
ENSG00000151150 -1.8384147 -2.9692374 5.167339 13.590543 0.0017451 0.2086028 ENSG00000151150 ANK3 ankyrin 3 10 60026298 60733490 protein_coding HGNC:494 3.0157323 3.5624007 2.7475096 3.1256777 3.1202882 -0.1148708 -0.1148708 3.0083522 3.3148061
ENSG00000172817 3.1455873 1.4887291 4.145323 13.256341 0.0017468 0.2086028 ENSG00000172817 CYP7B1 cytochrome P450 family 7 subfamily B member 1 8 64587763 64798737 protein_coding HGNC:2652 -0.9522522 2.3496506 2.2398495 4.4873511 5.2897169 0.1626805 0.1626805 4.4653256 1.4889864
ENSG00000115459 -1.9085896 -2.1614980 4.603585 13.589120 0.0017491 0.2086028 ENSG00000115459 ELMOD3 ELMO domain containing 3 2 85354394 85391752 protein_coding HGNC:26158 5.5152407 5.6443437 4.4081879 4.4752177 1.6246512 4.1643180 4.1643181 3.9559953 5.5812358
ENSG00000153823 2.1309514 1.0855822 5.302544 13.501665 0.0017767 0.2086028 ENSG00000153823 PID1 phosphotyrosine interaction domain containing 1 2 228850526 229271287 protein_coding HGNC:26084 2.1255671 3.2354965 4.0346859 4.8171258 4.9206563 3.5362663 3.5362668 4.6413004 2.7847385
ENSG00000147488 -1.1141048 -1.7064512 6.634919 13.454879 0.0017842 0.2086028 ENSG00000147488 ST18 ST18 C2H2C-type zinc finger transcription factor 8 52110838 52460959 protein_coding HGNC:18695 5.1920498 6.1572070 5.4585558 4.0334086 4.2926521 3.7017299 3.7017298 4.7359981 5.7538775
ENSG00000204463 -6.8277536 0.9939717 3.555705 16.967810 0.0017946 0.2086028 ENSG00000204463 BAG6 BAG cochaperone 6 6 31639028 31652705 protein_coding HGNC:13919 2.0027749 1.6626366 -13.2877124 -13.2877124 -13.2877124 3.6451892 3.6451892 -13.2877124 1.8427070
ENSG00000144893 3.4365644 1.2479612 5.765125 13.435301 0.0018096 0.2086028 ENSG00000144893 MED12L mediator complex subunit 12L 3 151085286 151437072 protein_coding HGNC:16050 -0.2322062 0.3116612 2.0589208 2.4068626 4.9164539 0.8674782 0.8674782 3.7249945 0.0652056
ENSG00000167460 1.4221561 0.2052642 8.254068 13.304038 0.0018534 0.2108491 ENSG00000167460 TPM4 tropomyosin 4 19 16067021 16103005 protein_coding HGNC:12013 6.2214761 5.7249355 7.4945060 7.5931171 7.7191782 6.3431583 6.3431583 7.6052051 5.9944634
ENSG00000230624 -8.1450125 0.3295881 4.446403 16.679702 0.0018744 0.2108491 ENSG00000230624 DDX39B DExD-box helicase 39B HSCHR6_MHC_DBB_CTG1 2777992 2794348 protein_coding HGNC:13917 1.2504268 3.9720233 -13.2877124 -13.2877124 -13.2877124 3.4830155 3.4830155 -13.2877124 3.1756712
ENSG00000278312 0.0000000 8.1814889 2.996294 19.841974 0.0018794 0.2108491 ENSG00000278312 LENG9 leukocyte receptor cluster member 9 HSCHR19LRC_COX1_CTG3_1 368305 370225 protein_coding HGNC:16306 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 4.3809492 4.3809490 -13.2877124 -13.2877124
ENSG00000151790 -0.1701599 2.5999557 4.159511 13.038515 0.0019872 0.2209690 ENSG00000151790 TDO2 tryptophan 2,3-dioxygenase 4 155854738 155920406 protein_coding HGNC:11708 2.6477471 2.3016400 2.2632400 3.1130390 1.0651925 5.1704571 5.1704571 2.3734316 2.4850478
ENSG00000149257 1.9539143 1.4657381 8.189845 12.915149 0.0020527 0.2221031 ENSG00000149257 SERPINH1 serpin family H member 1 11 75562056 75572783 protein_coding HGNC:1546 5.7735641 4.8537655 7.2994719 8.0112659 8.0404828 7.3056549 7.3056550 7.8219245 5.3857589
ENSG00000148344 1.8359364 0.7695242 5.992005 12.861977 0.0020868 0.2221031 ENSG00000148344 PTGES prostaglandin E synthase 9 129738331 129753042 protein_coding HGNC:9599 4.2973198 3.4485779 5.7445057 6.0535191 5.9682210 4.8044715 4.8044713 5.9278747 3.9344835
ENSG00000081692 -1.7448097 -0.5835000 7.661316 12.791597 0.0021221 0.2221031 ENSG00000081692 JMJD4 jumonji domain containing 4 1 227730425 227735411 protein_coding HGNC:25724 6.6277524 6.7779612 5.8539729 5.0803334 4.0408881 6.3089339 6.3089340 5.1716796 6.7048108
ENSG00000237412 -2.5734323 -4.2835759 3.621398 12.092047 0.0021224 0.2221031 ENSG00000237412 PRSS56 serine protease 56 2 232520388 232525716 protein_coding HGNC:39433 3.4639471 4.7363760 2.4271247 2.6364089 1.2462409 -0.9002874 -0.9002874 2.2191168 4.2361196
ENSG00000073756 -0.7666899 -2.4798161 5.850772 12.792828 0.0021251 0.2221031 ENSG00000073756 PTGS2 prostaglandin-endoperoxide synthase 2 1 186671791 186680922 protein_coding HGNC:9605 5.1098687 4.4512665 4.1994277 3.1549880 3.7720387 3.2370411 3.2370411 3.7704990 4.8178279
ENSG00000224006 -7.3177714 -7.3177714 3.205484 15.991049 0.0021338 0.2221031 ENSG00000224006 HSCHR6_MHC_COX_CTG1 1485506 1486509 unprocessed_pseudogene 4.7335124 4.5074100 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 4.6248864
ENSG00000164082 -2.2654983 -3.0607511 3.917332 12.459661 0.0021798 0.2221031 ENSG00000164082 GRM2 glutamate metabotropic receptor 2 3 51707068 51718613 protein_coding HGNC:4594 3.2128308 2.8956231 2.0631654 0.9042089 -0.0816412 0.8882332 0.8882332 1.2214694 3.0629275
ENSG00000167996 1.2817077 0.3296882 11.610018 12.648370 0.0022041 0.2221031 ENSG00000167996 FTH1 ferritin heavy chain 1 11 61959718 61967634 protein_coding HGNC:3976 11.0859067 11.1034913 12.4884986 12.3376742 12.5335624 11.4856247 11.4856246 12.4556496 11.0947257
ENSG00000138622 -3.7613971 -1.1486914 3.291962 10.311604 0.0022118 0.2221031 ENSG00000138622 HCN4 hyperpolarization activated cyclic nucleotide gated potassium channel 4 15 73319859 73368958 protein_coding HGNC:16882 0.8383629 1.5026799 -1.7760635 -2.7434724 -13.2877124 0.0828388 0.0828388 -2.7647906 1.2084255
ENSG00000229698 -5.8340145 -9.1876761 4.813869 10.261416 0.0022558 0.2221031 ENSG00000229698 HLA-F major histocompatibility complex, class I, F HSCHR6_MHC_SSTO_CTG1 1029074 1044770 protein_coding HGNC:4963 -13.2877124 7.2595303 -13.2877124 1.7509336 3.7934976 -13.2877124 -13.2877124 2.5220585 6.2595313
ENSG00000168237 -0.6791922 -2.8988876 6.845265 12.552461 0.0022630 0.2221031 ENSG00000168237 GLYCTK glycerate kinase 3 52287089 52295257 protein_coding HGNC:24247 5.4822340 7.1264171 5.9142222 5.9617085 6.2188566 3.7038325 3.7038327 6.0379185 6.5268757
ENSG00000125538 -1.8648074 -2.6795071 4.905980 12.604787 0.0022652 0.2221031 ENSG00000125538 IL1B interleukin 1 beta 2 112829751 112836816 protein_coding HGNC:5992 5.0431351 5.3851195 2.8501017 4.2006149 2.7222586 2.5743622 2.5743622 3.4238727 5.2242369
ENSG00000100095 -1.3120244 -1.5452835 6.031172 12.535577 0.0022790 0.2221031 ENSG00000100095 SEZ6L seizure related 6 homolog like 22 26169462 26383597 protein_coding HGNC:10763 4.4421449 4.8740459 3.4307413 4.0296436 3.1783018 3.4159172 3.4159168 3.5916782 4.6741979
ENSG00000126785 2.9452064 2.2878770 3.890339 12.168271 0.0022817 0.2221031 ENSG00000126785 RHOJ ras homolog family member J 14 63204114 63293508 protein_coding HGNC:688 -0.5572104 -0.4775043 2.8299709 3.8311842 2.8490255 3.4667670 3.4667670 3.2504005 -0.5168070
ENSG00000134352 1.3330970 0.2001732 6.291348 12.519815 0.0022843 0.2221031 ENSG00000134352 IL6ST interleukin 6 cytokine family signal transducer 5 55935095 55995022 protein_coding HGNC:6021 4.3333144 2.1372058 3.7960539 5.6890822 5.6713240 4.2360670 4.2360670 5.2785312 3.6180953
ENSG00000024422 1.4210738 0.7998886 6.879480 12.478480 0.0023090 0.2221031 ENSG00000024422 EHD2 EH domain containing 2 19 47713422 47743134 protein_coding HGNC:3243 4.3133535 3.9818968 5.7663332 5.6680055 5.7729437 4.9025643 4.9025642 5.7365527 4.1571230
ENSG00000154736 2.2449731 1.3232082 7.620914 12.477428 0.0023093 0.2221031 ENSG00000154736 ADAMTS5 ADAM metallopeptidase with thrombospondin type 1 motif 5 21 26917922 26967088 protein_coding HGNC:221 3.0606835 1.7111579 4.7025060 4.7857090 5.2674930 3.9731182 3.9731182 4.9407799 2.5382792
ENSG00000189058 1.0790787 3.0053660 4.184999 12.527356 0.0023156 0.2221031 ENSG00000189058 APOD apolipoprotein D 3 195568705 195584033 protein_coding HGNC:612 2.9318549 3.4296853 4.6501457 3.5845800 4.6815731 6.1835785 6.1835785 4.3870005 3.2021378
ENSG00000143867 1.3799096 3.5313493 4.251602 12.445055 0.0023349 0.2222548 ENSG00000143867 OSR1 odd-skipped related transcription factor 1 2 19351485 19358623 protein_coding HGNC:8111 1.5264940 -0.0519449 2.3006890 2.7481394 2.9440959 4.6515528 4.6515528 2.6886551 0.9431652
ENSG00000149131 3.5286235 2.8718395 4.771297 12.183051 0.0023893 0.2239441 ENSG00000149131 SERPING1 serpin family G member 1 11 57597387 57619171 protein_coding HGNC:1228 1.1898960 1.2139637 5.4289234 3.6659888 4.6439303 3.8088743 3.8088743 4.7508538 1.2019801
ENSG00000216490 -1.1935171 -7.9431015 4.263430 12.400071 0.0023973 0.2239441 ENSG00000216490 IFI30 IFI30 lysosomal thiol reductase 19 18173162 18178117 protein_coding HGNC:5398 5.2350662 5.3567262 4.7904158 4.3003786 2.6597531 -13.2877124 -13.2877124 4.1617773 5.2971782
ENSG00000118503 1.5984197 -0.2794634 5.250112 12.345436 0.0024062 0.2239441 ENSG00000118503 TNFAIP3 TNF alpha induced protein 3 6 137867214 137883314 protein_coding HGNC:11896 2.5726751 3.3718148 4.6395399 4.5960946 5.0859231 1.6819718 1.6819718 4.7913792 3.0268841
ENSG00000147257 7.4622336 3.2493460 3.677069 13.563434 0.0024288 0.2239441 ENSG00000147257 GPC3 glypican 3 X 133535745 133987100 protein_coding HGNC:4451 -13.2877124 -13.2877124 1.7266691 3.6022062 3.8624836 -1.0317839 -1.0317839 3.3218917 -13.2877124
ENSG00000111799 2.3613418 0.5289573 7.789569 12.240783 0.0024639 0.2239441 ENSG00000111799 COL12A1 collagen type XII alpha 1 chain 6 75084326 75206267 protein_coding HGNC:2188 3.6718448 2.4067075 4.5107181 5.9367990 5.6452658 3.9849108 3.9849108 5.4822229 3.1737269
ENSG00000011347 -1.3899884 0.0353958 8.854907 12.239267 0.0024644 0.2239441 ENSG00000011347 SYT7 synaptotagmin 7 11 61513714 61581148 protein_coding HGNC:11514 7.2792736 7.3952168 6.5848219 5.6775756 5.5706939 7.4080247 7.4080247 6.0201512 7.3384095
ENSG00000168394 4.5121048 3.8165623 4.812099 11.494066 0.0024911 0.2239441 ENSG00000168394 TAP1 transporter 1, ATP binding cassette subfamily B member 6 32845209 32853816 protein_coding HGNC:43 -13.2877124 0.8091889 3.7401170 4.4753084 6.0875277 4.1718703 4.1718703 5.1100429 -0.1907288
ENSG00000080644 -1.2590700 -0.9864462 9.075928 12.183803 0.0025024 0.2239441 ENSG00000080644 CHRNA3 cholinergic receptor nicotinic alpha 3 subunit 15 78593052 78621295 protein_coding HGNC:1957 9.8357369 10.1521010 8.8605984 8.8771259 8.4188273 8.9142737 8.9142736 8.7338878 10.0025734
ENSG00000114544 -1.2669217 0.9389255 6.328518 12.172143 0.0025198 0.2239441 ENSG00000114544 SLC41A3 solute carrier family 41 member 3 3 126006357 126101561 protein_coding HGNC:31046 4.9643788 5.6004014 4.5794036 3.8914148 3.1572273 6.1272974 6.1272973 3.9900109 5.3171593
ENSG00000167615 4.3207153 -2.6898873 3.315870 10.774503 0.0025370 0.2239441 ENSG00000167615 LENG8 leukocyte receptor cluster member 8 19 54449190 54462016 protein_coding HGNC:15500 -1.6256939 -13.2877124 1.8428312 1.7000468 2.1159385 -13.2877124 -13.2877124 1.8967198 -2.6252487
ENSG00000212807 7.2619048 5.7019945 3.615597 13.369565 0.0025487 0.2239441 ENSG00000212807 OR2A42 olfactory receptor family 2 subfamily A member 42 7 144228244 144239605 protein_coding HGNC:31230 -13.2877124 -13.2877124 2.6917434 1.0782218 1.7513909 0.3700035 0.3700035 1.9926716 -13.2877124
ENSG00000144645 2.2008287 1.3190529 4.928067 12.060067 0.0026194 0.2271015 ENSG00000144645 OSBPL10 oxysterol binding protein like 10 3 31657912 32077580 protein_coding HGNC:16395 2.5959180 -0.2464280 3.7754832 3.0628401 2.2064297 3.2218785 3.2218785 3.1519445 1.7842355
ENSG00000140937 2.0902395 1.8198722 7.005668 12.020324 0.0026207 0.2271015 ENSG00000140937 CDH11 cadherin 11 16 64943753 65126112 protein_coding HGNC:1750 5.1673746 4.9305373 5.7262082 6.9634492 7.5837344 7.4424701 7.4424701 6.9447477 5.0538104
ENSG00000142798 2.1452012 0.9339347 7.997604 11.958186 0.0026652 0.2293482 ENSG00000142798 HSPG2 heparan sulfate proteoglycan 2 1 21822244 21937310 protein_coding HGNC:5273 3.9826948 3.4696852 4.5112926 4.6494330 5.4504484 3.9701972 3.9701975 4.9327689 3.7488734
ENSG00000116729 1.5837905 0.3842221 5.561634 11.946167 0.0026832 0.2293482 ENSG00000116729 WLS Wnt ligand secretion mediator 1 68098473 68233120 protein_coding HGNC:30238 3.3540636 3.4992581 5.3189383 5.4889087 5.5493614 3.6175225 3.6175230 5.4556609 3.4284868
ENSG00000105825 2.0641493 -0.9072504 9.110560 11.817407 0.0027726 0.2345097 ENSG00000105825 TFPI2 tissue factor pathway inhibitor 2 7 93885396 93890753 protein_coding HGNC:11761 7.9985798 6.7850286 9.6738600 8.4513120 10.5448545 6.8849610 6.8849605 9.7926398 7.5158110
ENSG00000063438 -2.3407982 0.9096889 4.112743 11.234593 0.0027809 0.2345097 ENSG00000063438 AHRR aryl hydrocarbon receptor repressor 5 321714 438291 protein_coding HGNC:346 4.3119049 4.9712115 1.9194907 -0.7749225 2.7585710 5.4792343 5.4792343 1.8920117 4.6788976
ENSG00000163735 1.1511487 -1.1803526 6.095099 11.740459 0.0028366 0.2376141 ENSG00000163735 CXCL5 C-X-C motif chemokine ligand 5 4 73995642 73998677 protein_coding HGNC:10642 3.3677412 4.7888249 5.3896432 5.3725894 5.6104890 3.0692938 3.0692938 5.4617103 4.2466100
ENSG00000122783 0.7934244 2.1329464 6.221925 11.708282 0.0028651 0.2383074 ENSG00000122783 CYREN cell cycle regulator of NHEJ 7 135092363 135170795 protein_coding HGNC:22432 5.5386043 4.9622027 6.0868128 5.4541140 6.6491635 7.6120587 7.6120587 6.1441555 5.2790002
ENSG00000106089 -1.8791262 -1.9470278 4.569159 11.726251 0.0028828 0.2383074 ENSG00000106089 STX1A syntaxin 1A 7 73699206 73719672 protein_coding HGNC:11433 4.1264728 4.8276822 3.2915085 3.7597126 2.2892434 3.4682465 3.4682465 3.2339177 4.5192667
ENSG00000163682 1.1961466 -4.2965972 5.549563 11.595475 0.0029599 0.2400267 ENSG00000163682 RPL9 ribosomal protein L9 4 39452587 39458931 protein_coding HGNC:10369 4.0282259 6.6436836 7.2676297 7.3614973 6.6842622 1.5113496 1.5113496 7.1340136 5.8617588
ENSG00000129009 2.6959442 3.6796223 5.384763 11.596385 0.0029775 0.2400267 ENSG00000129009 ISLR immunoglobulin superfamily containing leucine rich repeat 15 74173710 74176872 protein_coding HGNC:6133 2.5537672 -1.3867022 4.7653382 5.3135251 4.6918075 5.8785845 5.8785845 4.9512286 1.6448004
ENSG00000196549 2.0537462 0.4838001 7.424784 11.563023 0.0029821 0.2400267 ENSG00000196549 MME membrane metalloendopeptidase 3 155024124 155183704 protein_coding HGNC:7154 5.6981785 4.5089983 6.6762119 7.6155252 7.4334616 5.0571078 5.0571080 7.2953528 5.2227961
ENSG00000087245 1.1925727 0.6093603 10.549180 11.560654 0.0029833 0.2400267 ENSG00000087245 MMP2 matrix metallopeptidase 2 16 55389700 55506691 protein_coding HGNC:7166 8.1854068 8.1976407 9.4331416 9.7625078 9.6229708 8.9982109 8.9982107 9.6124786 8.1915365
ENSG00000198369 2.0582825 0.6731699 4.544290 11.581022 0.0030027 0.2400267 ENSG00000198369 SPRED2 sprouty related EVH1 domain containing 2 2 65310851 65432637 protein_coding HGNC:17722 2.3304775 2.0638556 4.9831714 4.2975223 3.4332654 1.5084565 1.5084565 4.3714590 2.2033171
ENSG00000071967 2.2031710 1.3126488 5.537696 11.541902 0.0030182 0.2400267 ENSG00000071967 CYBRD1 cytochrome b reductase 1 2 171522247 171558129 protein_coding HGNC:20797 2.1709861 1.2663830 3.7799790 4.5029414 5.4055573 4.5461675 4.5461675 4.7151184 1.7884535
ENSG00000169604 1.9793946 0.5102013 7.662923 11.410278 0.0031163 0.2462693 ENSG00000169604 ANTXR1 ANTXR cell adhesion molecule 1 2 69013176 69249327 protein_coding HGNC:21014 4.9897997 3.5660365 6.1339877 6.1376796 6.7813719 4.8629497 4.8629497 6.3844999 4.4468570
ENSG00000134363 1.1623133 -0.7037321 5.218440 11.374820 0.0031605 0.2482018 ENSG00000134363 FST follistatin 5 53480626 53487134 protein_coding HGNC:3971 3.1581043 3.8515064 4.5562484 4.9826883 4.5792088 3.3744030 3.3744024 4.7197278 3.5460697
ENSG00000196569 2.4203874 1.5480099 6.630777 11.289529 0.0032325 0.2512120 ENSG00000196569 LAMA2 laminin subunit alpha 2 6 128883138 129516566 protein_coding HGNC:6482 2.6800207 0.2244133 3.7108680 3.8087180 4.2539149 3.0254316 3.0254316 3.9444387 1.9216180
ENSG00000169136 1.6564296 0.2587789 5.163154 11.286821 0.0032497 0.2512120 ENSG00000169136 ATF5 activating transcription factor 5 19 49928702 49933935 protein_coding HGNC:790 3.3344074 3.2757349 4.6902203 4.7188088 5.5117253 3.5688147 3.5688141 5.0264132 3.3053694
ENSG00000163430 2.2998138 0.7132435 9.138148 11.256292 0.0032589 0.2512120 ENSG00000163430 FSTL1 follistatin like 1 3 120392293 120451016 protein_coding HGNC:3972 6.7972363 3.7076507 8.2255258 8.3254150 8.6697285 6.7150520 6.7150520 8.4197193 5.9574777
ENSG00000116962 2.4819172 0.5381991 7.416616 11.187075 0.0033272 0.2543081 ENSG00000116962 NID1 nidogen 1 1 235975830 236065109 protein_coding HGNC:7821 3.6523804 1.7923640 5.2054776 5.3329218 6.1555789 3.6319367 3.6319367 5.6292763 3.0034128
ENSG00000146221 -1.6013825 -1.0346362 6.841226 11.176677 0.0033395 0.2543081 ENSG00000146221 TCTE1 t-complex-associated-testis-expressed 1 6 44278734 44297698 protein_coding HGNC:11693 6.2508478 5.4916663 4.2239208 4.4068164 4.7235861 4.9783748 4.9783746 4.4663896 5.9206287
ENSG00000017427 3.7297585 3.0257552 5.109157 11.004979 0.0034122 0.2582760 ENSG00000017427 IGF1 insulin like growth factor 1 12 102395874 102481744 protein_coding HGNC:5464 1.6419709 -2.1736122 4.5949697 3.0800970 5.1163329 3.2709629 3.2709629 4.4878079 0.7409595
ENSG00000007520 -1.0819750 0.1652468 6.545569 11.045803 0.0034724 0.2603356 ENSG00000007520 TSR3 TSR3 ribosome maturation factor 16 1349240 1351878 protein_coding HGNC:14175 6.7705480 6.9633336 6.0482245 5.6210908 6.0006083 7.0911407 7.0911406 5.9022316 6.8701587
ENSG00000204713 0.1291695 -7.8352308 4.769956 11.036537 0.0034985 0.2603356 ENSG00000204713 TRIM27 tripartite motif containing 27 6 28903002 28923988 protein_coding HGNC:9975 4.0497891 2.4479798 3.7818287 2.9635180 3.7768814 -13.2877124 -13.2877124 3.5550836 3.4606338
ENSG00000165389 1.6035763 2.3949358 4.705384 11.061320 0.0035015 0.2603356 ENSG00000165389 SPTSSA serine palmitoyltransferase small subunit A 14 34432788 34462240 protein_coding HGNC:20361 1.6390941 1.8565523 3.8354263 3.4915481 2.9015535 4.2148703 4.2148703 3.4592131 1.7519166
ENSG00000221970 6.8538796 0.0000000 3.149002 12.042041 0.0035450 0.2604132 ENSG00000221970 OR2A1 olfactory receptor family 2 subfamily A member 1 7 144312419 144322737 protein_coding HGNC:8229 -13.2877124 -13.2877124 0.7130500 2.2782634 1.6793107 -13.2877124 -13.2877124 1.6919736 -13.2877124
ENSG00000172345 2.4981823 3.4906486 5.204681 10.986774 0.0035592 0.2604132 ENSG00000172345 STARD5 StAR related lipid transfer domain containing 5 15 81309053 81324183 protein_coding HGNC:18065 0.9509596 1.2868622 2.5594115 4.1909091 3.8551650 4.0123508 4.0123508 3.6866918 1.1286649
ENSG00000149527 -7.1244954 -7.1244954 3.062583 13.378358 0.0036007 0.2604132 ENSG00000149527 PLCH2 phospholipase C eta 2 1 2425980 2505532 protein_coding HGNC:29037 -13.2877124 2.8749529 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 1.8749728
ENSG00000108691 1.4484606 -0.3415178 8.143179 10.902453 0.0036192 0.2604132 ENSG00000108691 CCL2 C-C motif chemokine ligand 2 17 34255274 34257208 protein_coding HGNC:10618 8.4272317 7.8793505 9.2424297 9.6331556 10.2703298 7.9033213 7.9033215 9.7785181 8.1791443
ENSG00000144229 -2.2782703 -7.3979011 3.546598 10.466641 0.0036436 0.2604132 ENSG00000144229 THSD7B thrombospondin type 1 domain containing 7B 2 136765545 137677718 protein_coding HGNC:29348 2.9622656 2.7253104 -2.5204052 -0.1671958 0.4122276 -13.2877124 -13.2877124 -0.3245725 2.8486474
ENSG00000166147 2.3268991 0.8793650 8.682388 10.874919 0.0036492 0.2604132 ENSG00000166147 FBN1 fibrillin 1 15 48408313 48645721 protein_coding HGNC:3603 3.9074852 2.1511435 5.6292580 5.7400446 6.0985790 4.3003478 4.3003478 5.8368487 3.2815484
ENSG00000140807 -2.3072208 -1.1878397 4.561020 10.863759 0.0036527 0.2604132 ENSG00000140807 NKD1 NKD inhibitor of WNT signaling pathway 1 16 50548396 50649249 protein_coding HGNC:17045 0.9627459 1.3638456 -0.4122683 -2.4944667 -0.9157534 2.6544168 2.6544168 -1.0400183 1.1771904
ENSG00000115602 4.0583453 0.7845832 5.355486 10.800169 0.0036684 0.2604132 ENSG00000115602 IL1RL1 interleukin 1 receptor like 1 2 102311502 102352037 protein_coding HGNC:5998 0.9986584 -13.2877124 5.4229804 4.9652978 3.3244974 1.5441678 1.5441678 4.8100919 -0.0012694
ENSG00000286169 -1.9117865 -1.3703984 4.807855 10.850096 0.0037270 0.2615023 ENSG00000286169 NA NA NA NA NA NA NA 2.5714708 4.0642573 0.8415578 1.4550355 1.2547156 1.6933344 1.6933344 1.2057716 3.5028968
ENSG00000149212 1.4197260 0.6510070 6.338456 10.802860 0.0037323 0.2615023 ENSG00000149212 SESN3 sestrin 3 11 95165513 95232541 protein_coding HGNC:23060 2.2100724 2.1359475 3.5480961 3.6543560 3.7953995 2.6999622 2.6999622 3.6695185 2.1734860
ENSG00000168280 -0.6873626 -2.2185247 6.758797 10.784636 0.0037512 0.2615023 ENSG00000168280 KIF5C kinesin family member 5C 2 148875227 149026759 protein_coding HGNC:6325 4.6377707 4.2516058 4.1581635 3.7793914 3.7595447 2.6284442 2.6284442 3.9110126 4.4575704
ENSG00000099974 2.8766175 -6.1501444 5.219563 10.765321 0.0038048 0.2615023 ENSG00000099974 DDTL D-dopachrome tautomerase like 22 23966888 23972556 protein_coding HGNC:33446 3.5298584 -13.2877124 5.5181954 6.2483967 4.6163734 -13.2877124 -13.2877124 5.6086336 2.5298709
ENSG00000107249 2.0561338 -0.3251892 4.489237 10.771431 0.0038081 0.2615023 ENSG00000107249 GLIS3 GLIS family zinc finger 3 9 3824127 4348392 protein_coding HGNC:28510 0.2667122 0.4984429 3.6439015 2.5142809 4.4558522 -0.2962366 -0.2962366 3.7426891 0.3872247
ENSG00000183214 6.9485427 8.5088741 4.107836 11.758127 0.0038128 0.2615023 ENSG00000183214 MICA MHC class I polypeptide-related sequence A HSCHR6_MHC_QBL_CTG1 2655411 2671966 protein_coding HGNC:7090 -13.2877124 -13.2877124 2.8813992 0.7262994 4.2268709 4.6330651 4.6330651 3.2093356 -13.2877124
ENSG00000054938 2.7416416 1.1006649 4.804052 10.735719 0.0038294 0.2615023 ENSG00000054938 CHRDL2 chordin like 2 11 74696429 74731426 protein_coding HGNC:24168 2.6356200 0.7162420 5.3179336 4.1404935 5.0071367 3.0422591 3.0422591 4.9018260 1.9740370
ENSG00000118971 -0.4172238 -1.5752034 7.871028 10.691370 0.0038572 0.2619771 ENSG00000118971 CCND2 cyclin D2 12 4269771 4305353 protein_coding HGNC:1583 5.1949374 5.7178991 5.1012572 5.4088252 5.2260173 3.9415644 3.9415646 5.2509267 5.4799855
ENSG00000112306 0.8596966 -1.2625276 6.119184 10.649570 0.0039094 0.2631496 ENSG00000112306 RPS12 ribosomal protein S12 6 132814569 132817564 protein_coding HGNC:10385 7.3314061 7.8915170 8.6824537 8.2147026 9.0404192 6.4565204 6.4565205 8.6847160 7.6384747
ENSG00000115648 0.0792648 2.4755403 5.162186 10.684633 0.0039164 0.2631496 ENSG00000115648 MLPH melanophilin 2 237485428 237555322 protein_coding HGNC:29643 4.6952889 2.7147069 3.1533032 4.2166444 5.3076409 6.1142610 6.1142610 4.4831747 4.0211217
ENSG00000100968 1.6866674 0.8715488 5.220277 10.635248 0.0039468 0.2637863 ENSG00000100968 NFATC4 nuclear factor of activated T cells 4 14 24365673 24379604 protein_coding HGNC:7778 3.5319558 1.9552548 5.1550661 4.3467940 6.2036864 3.7855999 3.7855999 5.4338899 2.9490631
ENSG00000206452 7.7335511 9.9010843 8.539787 9.717178 0.0040036 0.2651053 ENSG00000206452 HLA-C major histocompatibility complex, class I, C HSCHR6_MHC_QBL_CTG1 2524181 2527552 protein_coding HGNC:4933 -13.2877124 0.8723954 9.2629431 7.0227320 -13.2877124 10.1216506 10.1216506 7.9549605 -0.1275258
ENSG00000104067 1.4623362 0.2004469 5.414445 10.576407 0.0040088 0.2651053 ENSG00000104067 TJP1 tight junction protein 1 15 29699367 29968915 protein_coding HGNC:11827 1.6293221 3.6180274 2.8273260 3.0725770 3.3776779 3.7563504 3.7563504 3.1101579 2.9422215
ENSG00000151388 0.8775566 -1.4405889 5.189965 10.544210 0.0040476 0.2653668 ENSG00000151388 ADAMTS12 ADAM metallopeptidase with thrombospondin type 1 motif 12 5 33523535 33892019 protein_coding HGNC:14605 2.5597458 1.5045085 2.3924034 2.8317107 2.2187071 0.9234520 0.9234520 2.5045571 2.1265299
ENSG00000137857 -1.2989462 -0.5864652 9.718098 10.527463 0.0040549 0.2653668 ENSG00000137857 DUOX1 dual oxidase 1 15 45129933 45165576 protein_coding HGNC:3062 9.4621522 10.1917269 8.6133701 8.5703176 7.4787340 9.1081647 9.1081648 8.3070163 9.8725748
ENSG00000005108 -1.5088101 -3.1604914 4.176576 10.527432 0.0040969 0.2662855 ENSG00000005108 THSD7A thrombospondin type 1 domain containing 7A 7 11370365 11832198 protein_coding HGNC:22207 3.3204343 1.7005596 0.7931792 -0.3779524 0.3712176 -1.7726976 -1.7726976 0.3394647 2.7268225
ENSG00000132854 3.6123104 4.8441321 3.645116 9.410010 0.0041196 0.2662855 ENSG00000132854 KANK4 KN motif and ankyrin repeat domains 4 1 62236165 62319434 protein_coding HGNC:27263 -0.2788339 -13.2877124 2.2932186 1.6037025 0.1832807 2.4485767 2.4485767 1.5971211 -1.2786588
ENSG00000180822 1.3805305 0.2181207 8.730676 10.465894 0.0041326 0.2662855 ENSG00000180822 PSMG4 proteasome assembly chaperone 4 6 3231403 3303373 protein_coding HGNC:21108 7.0359214 6.6068191 8.0078697 8.5325174 8.2239886 7.1466350 7.1466349 8.2709788 6.8372659
ENSG00000160221 2.3848789 4.6334624 3.714567 9.743965 0.0041682 0.2672127 ENSG00000160221 GATD3 glutamine amidotransferase class 1 domain containing 3 21 44133610 44210114 protein_coding HGNC:1273 0.5629101 0.9768512 1.2253786 3.9804858 -0.4195303 5.1450429 5.1450429 2.6531268 0.7846757
ENSG00000140285 1.7129737 0.2369533 4.973785 10.422847 0.0042191 0.2688391 ENSG00000140285 FGF7 fibroblast growth factor 7 15 49423237 49488775 protein_coding HGNC:3685 3.5201011 3.4737892 5.2052571 4.8783178 5.9423366 4.7004757 4.7004758 5.4127436 3.4971307
ENSG00000126353 2.1906257 2.2498180 5.270044 10.413920 0.0042364 0.2688391 ENSG00000126353 CCR7 C-C motif chemokine receptor 7 17 40551081 40565472 protein_coding HGNC:1608 2.8183197 2.5613124 4.2484035 5.0962161 5.9482286 4.7194947 4.7194947 5.2599911 2.6955315
ENSG00000176809 -1.6572873 0.7828978 4.311925 10.270710 0.0043229 0.2728550 ENSG00000176809 LRRC37A3 leucine rich repeat containing 37 member A3 17 64854130 64919480 protein_coding HGNC:32427 4.2912172 3.7372791 4.3040364 4.9821995 -0.6583489 5.6146289 5.6146289 4.1153304 4.0406724
ENSG00000143878 1.7832164 1.0732009 6.451645 10.308747 0.0043431 0.2728550 ENSG00000143878 RHOB ras homolog family member B 2 20447074 20449440 protein_coding HGNC:668 3.9305532 3.9419263 5.4940428 5.3837288 6.3991459 5.0721471 5.0721470 5.8347246 3.9362507
ENSG00000083307 -2.1583674 1.9762331 3.346575 8.770729 0.0043701 0.2731877 ENSG00000083307 GRHL2 grainyhead like transcription factor 2 8 101492439 101669726 protein_coding HGNC:2799 0.8468150 -0.3366226 -13.2877124 -1.3201583 -0.7407601 2.4539892 2.4539892 -1.5863843 0.3731860
ENSG00000203734 -2.5747541 -0.1327286 3.705060 9.501048 0.0044624 0.2740682 ENSG00000203734 ECT2L epithelial cell transforming 2 like 6 138795911 138904070 protein_coding HGNC:21118 1.5557318 2.4932817 -1.0574697 -0.4410702 0.1384685 1.9932334 1.9932334 -0.3722077 2.0993627
ENSG00000197496 2.8469714 2.3781959 4.723482 10.199060 0.0044781 0.2740682 ENSG00000197496 SLC2A10 solute carrier family 2 member 10 20 46709649 46736347 protein_coding HGNC:13444 -0.0890064 0.4759751 2.4349991 2.7619575 3.9789887 2.6703312 2.6703312 3.2203024 0.2209663
ENSG00000136960 1.2169962 0.7578669 6.749241 10.205827 0.0044825 0.2740682 ENSG00000136960 ENPP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 8 119557086 119673453 protein_coding HGNC:3357 4.3891989 4.7336158 5.9947889 5.9025151 5.5211222 5.2675567 5.2675568 5.8202625 4.5716610
ENSG00000160613 1.6673173 -0.7462617 8.688165 10.195528 0.0044952 0.2740682 ENSG00000160613 PCSK7 proprotein convertase subtilisin/kexin type 7 11 117204337 117232525 protein_coding HGNC:8748 6.0473767 5.2736285 7.0627959 8.0431271 7.4066064 5.4131935 5.4131936 7.5625857 5.7117647
ENSG00000198513 1.4396812 0.5159056 5.349903 10.206679 0.0044970 0.2740682 ENSG00000198513 ATL1 atlastin GTPase 1 14 50532509 50634017 protein_coding HGNC:11231 2.7185666 3.4994470 4.7867772 4.3483885 4.6111148 3.5194511 3.5194511 4.5932081 3.1612071
ENSG00000135047 1.2681201 0.8085593 6.546767 10.181444 0.0045177 0.2740682 ENSG00000135047 CTSL cathepsin L 9 87724051 87731469 protein_coding HGNC:2537 5.3018505 5.2234076 6.7881007 6.8398164 6.4072417 6.0655978 6.0655977 6.6908700 5.2631621
ENSG00000138092 1.3471709 1.2213346 7.655206 10.166436 0.0045369 0.2740682 ENSG00000138092 CENPO centromere protein O 2 24793136 24822376 protein_coding HGNC:28152 4.7097178 5.8239262 6.6986204 7.5694419 7.8688801 7.3577655 7.3577655 7.4582666 5.3718146
ENSG00000179409 -1.3026620 -1.3762843 6.112507 10.111835 0.0046248 0.2776625 ENSG00000179409 GEMIN4 gem nuclear organelle associated protein 4 17 744421 753999 protein_coding HGNC:15717 4.8967176 5.0532191 4.0133209 3.5085566 2.9710491 3.2228988 3.2228988 3.5595114 4.9770894
ENSG00000159216 1.4665141 0.9037273 5.814868 10.100954 0.0046406 0.2776625 ENSG00000159216 RUNX1 RUNX family transcription factor 1 21 34787801 36004667 protein_coding HGNC:10471 2.7339675 2.2905155 4.5331755 4.5814906 4.1502005 3.5791915 3.5791915 4.4341092 2.5292133
ENSG00000171408 2.0562576 1.9091267 4.921996 10.100643 0.0046786 0.2778876 ENSG00000171408 PDE7B phosphodiesterase 7B 6 135851701 136195574 protein_coding HGNC:8792 0.8029319 0.6627041 3.4219380 3.1632606 3.1692623 2.6995778 2.6995778 3.2566180 0.7345210
ENSG00000137573 3.1472175 -0.2527120 6.384342 10.057178 0.0047137 0.2778876 ENSG00000137573 SULF1 sulfatase 1 8 69466624 69660915 protein_coding HGNC:20391 3.6577484 1.6620838 4.4664312 5.7504273 7.3656474 2.2874342 2.2874342 6.3271074 2.9805447
ENSG00000231608 -4.0188360 4.0029591 3.012370 11.243871 0.0047191 0.2778876 ENSG00000231608 TNXB tenascin XB HSCHR6_MHC_DBB_CTG1 3282563 3358976 protein_coding HGNC:11976 -1.9383537 -13.2877124 -13.2877124 -13.2877124 -13.2877124 1.2509222 1.2509222 -13.2877124 -2.9378009
ENSG00000137193 3.3442875 1.2597292 3.276980 9.277402 0.0047328 0.2778876 ENSG00000137193 PIM1 Pim-1 proto-oncogene, serine/threonine kinase 6 37170152 37175428 protein_coding HGNC:8986 -0.7072489 -1.6270925 2.6814488 3.6385936 3.7440611 0.3158711 0.3158711 3.4270946 -1.0950697
ENSG00000114770 -1.6267142 -0.0728753 4.847474 9.997452 0.0048478 0.2826486 ENSG00000114770 ABCC5 ATP binding cassette subfamily C member 5 3 183919934 184017939 protein_coding HGNC:56 4.7635115 4.2925325 5.0244227 2.2244312 2.6021122 4.6796762 4.6796760 3.8510444 4.5471567
ENSG00000183570 -3.1948549 0.0515763 3.857212 8.880762 0.0049124 0.2826486 ENSG00000183570 PCBP3 poly(rC) binding protein 3 21 45643694 45942454 protein_coding HGNC:8651 4.5587173 4.2285388 -13.2877124 2.0988938 -0.3470538 3.6333566 3.6333566 0.7570506 4.4030532
ENSG00000225987 -3.4308859 -0.2500819 3.021062 8.358323 0.0049136 0.2826486 ENSG00000225987 PBX2 PBX homeobox 2 HSCHR6_MHC_APD_CTG1 3517335 3522785 protein_coding HGNC:8633 4.0185675 3.5367251 0.8096375 -1.1830416 0.2997862 3.6135561 3.6135561 0.1907855 3.7976696
ENSG00000107562 3.3048661 2.5909603 6.972949 9.892572 0.0049620 0.2826486 ENSG00000107562 CXCL12 C-X-C motif chemokine ligand 12 10 44370165 44386493 protein_coding HGNC:10672 3.9076610 1.3140340 6.5629003 5.5934426 7.7385334 5.7695305 5.7695305 6.8923561 3.1288188
ENSG00000214736 2.5866605 3.2779469 3.633122 9.509092 0.0049788 0.2826486 ENSG00000214736 TOMM6 translocase of outer mitochondrial membrane 6 6 41787662 41789898 protein_coding HGNC:34528 1.7477539 3.0105407 5.3527056 5.1136446 5.5762948 5.9675146 5.9675146 5.3598683 2.5131137
ENSG00000214278 -3.2046576 -1.2006137 3.198508 8.434265 0.0049998 0.2826486 ENSG00000214278 5 403731 404546 processed_pseudogene 3.6351253 5.3031142 1.8752866 0.8968600 1.4796186 3.4952243 3.4952243 1.4715350 4.6978387
ENSG00000241318 3.4677735 0.9652015 3.952056 9.497271 0.0050216 0.2826486 ENSG00000241318 WDR82P2 1 91534666 91535593 processed_pseudogene HGNC:33513 2.5144515 -13.2877124 5.5977149 5.0807576 4.9038507 2.6360213 2.6360213 5.2250354 1.5144768
ENSG00000275832 -0.9344770 -8.8420061 5.202183 9.858661 0.0050271 0.2826486 ENSG00000275832 ARHGAP23 Rho GTPase activating protein 23 17 38419280 38512385 protein_coding HGNC:29293 5.8245703 6.4817681 5.1062449 5.2996707 5.9221295 -13.2877124 -13.2877124 5.4861811 6.1902721
ENSG00000187257 -1.7997330 0.7991375 3.938251 9.588724 0.0050450 0.2826486 ENSG00000187257 RSBN1L round spermatid basic protein 1 like 7 77696459 77783022 protein_coding HGNC:24765 0.9550003 1.6782387 0.1477508 -0.6274668 -1.0479468 2.1994358 2.1994358 -0.4222310 1.3614736
ENSG00000011021 -0.2878461 -2.2763106 5.421997 9.801906 0.0051076 0.2826486 ENSG00000011021 CLCN6 chloride voltage-gated channel 6 1 11806096 11848079 protein_coding HGNC:2024 2.8556122 3.6372032 2.7902664 3.1673045 3.2660817 2.4481369 2.4481369 3.0886810 3.2987020
ENSG00000231345 3.8918545 0.4198586 5.548700 9.773259 0.0051398 0.2826486 ENSG00000231345 BEND3P1 10 50658529 50660472 transcribed_processed_pseudogene HGNC:45014 1.7173033 -0.6620195 2.8832235 5.9343763 5.0119992 1.5034668 1.5034668 5.0703791 0.9709287
ENSG00000101955 2.6670914 -4.6101222 3.633709 9.620459 0.0051405 0.2826486 ENSG00000101955 SRPX sushi repeat containing protein X-linked X 38149336 38220924 protein_coding HGNC:11309 0.6226661 2.3311554 3.2658179 2.6293631 4.5193881 -13.2877124 -13.2877124 3.6907758 1.7162886
ENSG00000171867 1.1091151 0.3288057 6.865774 9.773822 0.0051427 0.2826486 ENSG00000171867 PRNP prion protein (Kanno blood group) 20 4686350 4701590 protein_coding HGNC:9449 5.3843531 4.9543904 5.8381834 6.1372746 6.5504685 6.0968668 6.0968669 6.2050945 5.1853306
ENSG00000007402 -2.0439565 -1.7045102 5.604015 9.788789 0.0051579 0.2826486 ENSG00000007402 CACNA2D2 calcium voltage-gated channel auxiliary subunit alpha2delta 2 3 50362613 50504244 protein_coding HGNC:1400 4.0253141 4.3721045 2.7074667 1.1331742 2.8477755 2.8130777 2.8130777 2.4081719 4.2091044
ENSG00000070047 -6.9941753 -6.9941753 2.966571 11.766570 0.0051834 0.2826486 ENSG00000070047 PHRF1 PHD and ring finger domains 1 11 576470 612222 protein_coding HGNC:24351 -1.0311941 2.4750026 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 1.5966938
ENSG00000189212 -2.5758588 -0.4730786 3.473711 8.921180 0.0051956 0.2826486 ENSG00000189212 DPY19L2P1 7 35081590 35186041 transcribed_unprocessed_pseudogene HGNC:22305 1.8265900 2.2712180 -0.2333641 -0.7456599 -0.2937886 1.6529008 1.6529008 -0.4068528 2.0659655
ENSG00000214595 -1.6068330 -1.6122165 5.271833 9.761750 0.0052049 0.2826486 ENSG00000214595 EML6 EMAP like 6 2 54723499 54972025 protein_coding HGNC:35412 2.8276357 4.6663424 3.6660815 2.8884111 2.2829133 2.3580606 2.3580606 3.0568842 4.0220040
ENSG00000137507 3.1294418 0.5661376 7.072341 9.726752 0.0052274 0.2826486 ENSG00000137507 LRRC32 leucine rich repeat containing 32 11 76657524 76670747 protein_coding HGNC:4161 3.3776110 0.9857547 5.3992240 5.3335751 6.7945988 3.2432531 3.2432531 6.0115244 2.6292235
ENSG00000087116 2.0162243 0.9663607 5.268514 9.733372 0.0052413 0.2826486 ENSG00000087116 ADAMTS2 ADAM metallopeptidase with thrombospondin type 1 motif 2 5 179110853 179345461 protein_coding HGNC:218 1.9140417 0.6144601 2.9046504 3.4823355 3.6351268 1.9497605 1.9497605 3.3733691 1.4058889
ENSG00000064042 2.0054393 1.7021433 4.722979 9.703957 0.0053142 0.2853535 ENSG00000064042 LIMCH1 LIM and calponin homology domains 1 4 41359607 41700044 protein_coding HGNC:29191 2.5177121 1.9427997 3.2068585 3.1108805 5.9063097 2.5116080 2.5116080 4.6976316 2.2587061
ENSG00000162496 2.2679677 -0.2355091 4.049226 9.630582 0.0053919 0.2860732 ENSG00000162496 DHRS3 dehydrogenase/reductase 3 1 12567909 12620133 protein_coding HGNC:17693 1.2122331 1.2924072 2.8250417 3.9055695 4.1849209 1.7719726 1.7719726 3.7463375 1.2528770
ENSG00000010278 -1.5966739 -0.0923921 5.807647 9.637314 0.0054045 0.2860732 ENSG00000010278 CD9 CD9 molecule 12 6199715 6238271 protein_coding HGNC:1709 5.9185027 6.5923515 5.0018523 5.3295933 3.7230593 6.2484980 6.2484980 4.8322085 6.2944169
ENSG00000166741 2.6424006 1.9572968 6.048413 9.629555 0.0054110 0.2860732 ENSG00000166741 NNMT nicotinamide N-methyltransferase 11 114257787 114313536 protein_coding HGNC:7861 4.3591048 2.8854820 6.3734695 6.5979569 7.4489880 5.3943115 5.3943114 6.8847154 3.8027929
ENSG00000090376 4.8593300 4.1530647 3.507042 9.020590 0.0054286 0.2860732 ENSG00000090376 IRAK3 interleukin 1 receptor associated kinase 3 12 66189195 66254622 protein_coding HGNC:17020 -3.4941416 -13.2877124 0.2109910 1.5767620 2.2115390 0.1112050 0.1112050 1.5479714 -4.4925169
ENSG00000231834 -6.0967958 0.4295205 5.376152 8.137820 0.0054414 0.2860732 ENSG00000231834 HLA-A major histocompatibility complex, class I, A HSCHR6_MHC_MANN_CTG1 1195801 1200442 protein_coding HGNC:4931 -13.2877124 7.5483690 -13.2877124 -13.2877124 1.0954829 6.9690660 6.9690660 -0.4893445 6.5483697
ENSG00000049323 1.4450369 -0.2693686 7.145673 9.495686 0.0056306 0.2911715 ENSG00000049323 LTBP1 latent transforming growth factor beta binding protein 1 2 32946953 33399509 protein_coding HGNC:6714 4.0465657 4.4618785 5.2183780 5.2803011 5.5320653 3.5108365 3.5108366 5.3500714 4.2691155
ENSG00000008394 1.6830474 -2.1381924 4.420224 9.518573 0.0056477 0.2911715 ENSG00000008394 MGST1 microsomal glutathione S-transferase 1 12 16347142 16609259 protein_coding HGNC:7061 4.4172208 2.9211621 5.7550334 6.0545769 6.1246528 1.6427358 1.6427358 5.9867799 3.8550032
ENSG00000159403 2.0479293 0.9614136 7.526305 9.464721 0.0056884 0.2911715 ENSG00000159403 C1R complement C1r 12 7080214 7092540 protein_coding HGNC:1246 5.6062427 3.7919230 6.8310834 7.2159383 8.0678481 6.5646941 6.5646941 7.4672007 4.9672678
ENSG00000134853 2.0425537 1.5172357 6.741390 9.453922 0.0057120 0.2911715 ENSG00000134853 PDGFRA platelet derived growth factor receptor alpha 4 54229280 54298245 protein_coding HGNC:8803 2.8195347 1.7958754 5.3828009 5.2651845 6.1325460 4.0133794 4.0133794 5.6471191 2.3966538
ENSG00000135835 -0.9639906 -0.2739923 8.952255 9.433691 0.0057460 0.2911715 ENSG00000135835 KIAA1614 KIAA1614 1 180912897 180951614 protein_coding HGNC:29327 6.5969273 6.7144483 5.2193033 6.3706510 5.9843482 6.6246488 6.6246488 5.9331855 6.6568842
ENSG00000125730 1.8369782 0.6747547 8.454262 9.419329 0.0057734 0.2911715 ENSG00000125730 C3 complement C3 19 6677704 6730562 protein_coding HGNC:1318 6.4468885 6.0564216 6.8090023 7.4962931 7.7407966 6.6314155 6.6314156 7.3996934 6.2648250
ENSG00000236881 -10.0429572 -10.0429572 5.568992 11.286069 0.0057871 0.2911715 ENSG00000236881 HSCHR6_MHC_SSTO_CTG1 1029240 1030230 unprocessed_pseudogene 1.7180889 8.5043045 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 7.5173166
ENSG00000026025 1.1274195 0.3943130 8.821839 9.396190 0.0058177 0.2911715 ENSG00000026025 VIM vimentin 10 17228241 17237593 protein_coding HGNC:12692 7.5306969 7.2353373 8.2181658 9.0129395 8.7377944 7.9634218 7.9634221 8.6926940 7.3905628
ENSG00000273873 0.0000000 7.7396701 2.674795 12.931281 0.0058191 0.2911715 ENSG00000273873 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB HSCHR5_2_CTG1_1 1454100 1566305 protein_coding HGNC:13652 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 1.2187217 1.2187217 -13.2877124 -13.2877124
ENSG00000189051 -2.5905373 -2.5158061 3.438608 8.752428 0.0058552 0.2911715 ENSG00000189051 RNF222 ring finger protein 222 17 8390702 8397827 protein_coding HGNC:34517 2.6362940 2.9088517 0.6327624 -1.3363293 0.8282367 0.2672505 0.2672505 0.3111439 2.7789997
ENSG00000274305 -1.2704818 -1.4322470 5.404873 9.381856 0.0058772 0.2911715 ENSG00000274305 LENG8 leukocyte receptor cluster member 8 HSCHR19LRC_PGF1_CTG3_1 353405 366704 protein_coding HGNC:15500 3.6330207 4.2559114 3.0241257 2.4436016 2.8585060 2.5761329 2.5761329 2.7954571 3.9778252
ENSG00000122877 1.5928260 1.2872950 5.365371 9.375204 0.0058846 0.2911715 ENSG00000122877 EGR2 early growth response 2 10 62811996 62819167 protein_coding HGNC:3239 2.7898133 3.5734454 4.2532142 4.1708131 4.3453876 3.8970000 3.8970000 4.2582353 3.2341938
ENSG00000150337 -2.5384139 -0.9048985 3.530401 8.724087 0.0059021 0.2911715 ENSG00000150337 FCGR1A Fc gamma receptor Ia 1 149782671 149791675 protein_coding HGNC:3613 3.0353887 3.1826905 0.0337352 2.2265427 0.6436872 4.4175403 4.4175403 1.2762161 3.1109188
ENSG00000105372 1.0543832 0.5560870 8.289872 9.350753 0.0059064 0.2911715 ENSG00000105372 RPS19 ribosomal protein S19 19 41860255 41872925 protein_coding HGNC:10402 9.0479756 9.2990457 10.2605948 10.1399068 10.4972507 9.7519786 9.7519786 10.3069728 9.1789656
ENSG00000166428 -0.8690380 -1.2158256 7.121262 9.350903 0.0059074 0.2911715 ENSG00000166428 PLD4 phospholipase D family member 4 14 104924713 104937761 protein_coding HGNC:23792 6.0093093 6.0842844 5.1074203 4.9221171 4.8355349 4.8773248 4.8773246 4.9595263 6.0472838
ENSG00000064270 -1.6391371 -0.4563799 4.884922 9.383281 0.0059138 0.2911715 ENSG00000064270 ATP2C2 ATPase secretory pathway Ca2+ transporting 2 16 84368527 84464187 protein_coding HGNC:29103 4.7444694 5.5783051 2.6926269 3.4967131 3.9636836 4.4532550 4.4532548 3.4748734 5.2208086
ENSG00000109790 1.6920350 -0.2936910 4.398770 9.371263 0.0059323 0.2911715 ENSG00000109790 KLHL5 kelch like family member 5 4 39045039 39126857 protein_coding HGNC:6356 2.1788851 2.0528356 3.4226439 3.1468616 4.5369231 1.5459639 1.5459639 3.8343849 2.1172366
ENSG00000243742 -1.4050330 0.4053536 5.384324 9.312679 0.0060353 0.2949198 ENSG00000243742 RPLP0P2 11 61636680 61637640 transcribed_processed_pseudogene HGNC:17960 6.2776059 5.6782799 4.5257445 5.2387442 4.4351461 6.7502591 6.7502591 4.7800733 6.0088432
ENSG00000168542 2.5378410 1.5437305 12.821132 9.275814 0.0060557 0.2949198 ENSG00000168542 COL3A1 collagen type III alpha 1 chain 2 188974373 189012746 protein_coding HGNC:2201 9.1601471 7.1359891 10.9735484 10.9789479 11.5904598 10.1716370 10.1716371 11.2112501 8.4772758
ENSG00000206376 6.4116319 8.6549656 3.938155 9.978848 0.0062123 0.3013792 ENSG00000206376 EHMT2 euchromatic histone lysine methyltransferase 2 HSCHR6_MHC_QBL_CTG1 3135732 3153671 protein_coding HGNC:14129 -13.2877124 -13.2877124 0.0941077 2.7639803 -13.2877124 3.6820648 3.6820648 1.3896004 -13.2877124
ENSG00000183054 1.9218175 -0.2896590 4.463314 9.199945 0.0062762 0.3018090 ENSG00000183054 RGPD6 RANBP2 like and GRIP domain containing 6 2 110513802 110610840 protein_coding HGNC:32419 4.1325601 4.0514663 4.8745600 3.2129143 3.7344957 2.1814292 2.1814292 4.1131983 4.0925829
ENSG00000105640 1.0210544 -0.0807569 6.860648 9.164324 0.0062885 0.3018090 ENSG00000105640 RPL18A ribosomal protein L18a 19 17859910 17864153 protein_coding HGNC:10311 7.2756582 7.9604583 8.8004211 8.7155494 9.2386992 7.5655814 7.5655812 8.9369862 7.6583143
ENSG00000089157 1.2616479 0.5131805 8.617190 9.161382 0.0062932 0.3018090 ENSG00000089157 RPLP0 ribosomal protein lateral stalk subunit P0 12 120196699 120201235 protein_coding HGNC:10371 8.0525124 7.8014259 9.0468062 9.1607665 9.6946134 8.5184230 8.5184230 9.3293369 7.9324244
ENSG00000038427 2.8411118 1.4412898 8.698859 9.083243 0.0064621 0.3087332 ENSG00000038427 VCAN versican 5 83471618 83582303 protein_coding HGNC:2464 4.7095984 2.4604047 6.5941875 6.7369823 7.0556049 6.0771500 6.0771500 6.8087001 3.9850131
ENSG00000204967 -0.3337650 1.6168295 4.910004 9.093268 0.0065151 0.3100827 ENSG00000204967 PCDHA4 protocadherin alpha 4 5 140807037 141012347 protein_coding HGNC:8670 2.1498495 2.3376843 1.9172457 0.4329680 3.0005606 4.1570367 4.1570364 2.1298468 2.2468215
ENSG00000112210 1.4214326 0.7247883 7.501275 9.047754 0.0065409 0.3101359 ENSG00000112210 RAB23 RAB23, member RAS oncogene family 6 57186992 57222307 protein_coding HGNC:14263 4.4819156 3.7302072 5.4842747 5.7732801 5.8651029 4.9710144 4.9710142 5.7164798 4.1544763
ENSG00000153071 1.6245573 0.7776533 6.322927 9.029384 0.0065869 0.3106885 ENSG00000153071 DAB2 DAB adaptor protein 2 5 39371675 39462300 protein_coding HGNC:2662 4.9533564 2.5544184 5.1588672 4.9677232 4.5344704 5.3642087 5.3642086 4.9099607 4.2038378
ENSG00000068305 -1.0850677 -1.5231686 5.667997 9.001657 0.0066637 0.3106885 ENSG00000068305 MEF2A myocyte enhancer factor 2A 15 99565417 99716488 protein_coding HGNC:6993 4.9617242 3.9741766 3.9363521 2.6483532 4.0770967 3.3789359 3.3789360 3.6802219 4.5508496
ENSG00000240661 1.3130801 -1.2649210 5.605540 8.996306 0.0066675 0.3106885 ENSG00000240661 BTNL12P 3 120357754 120367874 transcribed_unitary_pseudogene HGNC:52935 5.5343702 3.9763997 6.3885041 6.6940881 6.0826224 4.0417551 4.0417546 6.4099206 4.9562031
ENSG00000126709 -2.2107786 -2.7680819 6.847280 8.991995 0.0066744 0.3106885 ENSG00000126709 IFI6 interferon alpha inducible protein 6 1 27666064 27672212 protein_coding HGNC:4054 6.6129959 9.5964569 6.9512028 6.4606735 6.2408461 5.9654819 5.9654819 6.5821878 8.7682289
ENSG00000231852 1.8247205 4.1374550 3.711932 8.656910 0.0066762 0.3106885 ENSG00000231852 CYP21A2 cytochrome P450 family 21 subfamily A member 2 6 32038327 32041644 protein_coding HGNC:2600 1.1824438 -13.2877124 1.4577246 2.8665694 1.9769061 4.5091127 4.5091127 2.2199705 0.1825080
ENSG00000274779 -1.4350193 0.6046036 6.051681 8.973732 0.0067351 0.3122761 ENSG00000274779 NOMO1 NODAL modulator 1 HSCHR16_1_CTG1 890754 953160 protein_coding HGNC:30060 4.4458145 6.3260953 5.7780008 5.6316141 5.5691843 6.5913941 6.5913941 5.6622767 5.6727752
ENSG00000269343 -2.1530323 -0.3922967 4.443605 8.919230 0.0067709 0.3127823 ENSG00000269343 ZNF587B zinc finger protein 587B 19 57819721 57846238 protein_coding HGNC:37142 2.4230115 4.0686460 1.9536843 1.5208004 0.9989363 3.0387175 3.0387175 1.5429434 3.4687531
ENSG00000069424 -1.7575585 -1.4702178 4.327557 8.947184 0.0068098 0.3134271 ENSG00000069424 KCNAB2 potassium voltage-gated channel subfamily A regulatory beta subunit 2 1 5990927 6101193 protein_coding HGNC:6229 3.8031706 3.5343986 1.8199620 4.2473973 2.1227608 3.3472949 3.3472949 3.1634453 3.6750345
ENSG00000267645 -6.4098180 0.8783934 3.182076 10.621695 0.0068981 0.3142581 ENSG00000267645 POLR2J2-UPK3BL1 readthrough 7 102637049 102671641 protein_coding 3.7711223 -13.2877124 -13.2877124 -13.2877124 -13.2877124 3.7999683 3.7999683 -13.2877124 2.7711330
ENSG00000152661 1.4525217 0.6511305 6.264219 8.891837 0.0069042 0.3142581 ENSG00000152661 GJA1 gap junction protein alpha 1 6 121435595 121449727 protein_coding HGNC:4274 3.6370637 3.5885662 4.7743594 5.0406278 5.6048357 4.3278449 4.3278447 5.1825151 3.6130188
ENSG00000115271 -2.3842192 -2.1730207 3.799471 8.642279 0.0069191 0.3142581 ENSG00000115271 GCA grancalcin 2 162318840 162371595 protein_coding HGNC:15990 2.9821275 5.4576733 3.4383433 2.5433533 1.1365806 3.8003805 3.8003805 2.6529373 4.6962140
ENSG00000187955 2.9438775 1.6645057 7.947268 8.880325 0.0069279 0.3142581 ENSG00000187955 COL14A1 collagen type XIV alpha 1 chain 8 120059780 120373573 protein_coding HGNC:2191 3.6205839 0.7084248 5.4391153 6.4113648 6.0628345 4.5820899 4.5820899 6.0249558 2.8005374
ENSG00000206505 -4.6865491 -6.7568771 7.742670 8.886620 0.0069580 0.3144858 ENSG00000206505 HLA-A major histocompatibility complex, class I, A HSCHR6_MHC_QBL_CTG1 1196218 1264879 protein_coding HGNC:4931 2.0688654 9.8636792 -2.4096691 1.4288386 4.4985148 -0.0382019 -0.0382019 3.0865932 8.8701614
ENSG00000127124 0.2310142 -2.6928390 4.853986 8.867762 0.0069870 0.3146658 ENSG00000127124 HIVEP3 HIVEP zinc finger 3 1 41506365 42035925 protein_coding HGNC:13561 1.6944599 2.4480327 0.9143403 1.5388565 1.7437515 -0.1096342 -0.1096342 1.4399592 2.1198993
ENSG00000233948 3.4909216 7.4419138 2.620577 7.859173 0.0070382 0.3150361 ENSG00000233948 TRIM27 tripartite motif containing 27 HSCHR6_MHC_MCF_CTG1 168757 189744 protein_coding HGNC:9975 -13.2877124 -13.2877124 -13.2877124 -0.4926204 -13.2877124 4.6350946 4.6350946 -2.0771768 -13.2877124
ENSG00000145113 3.1354496 5.6144008 2.804079 8.244339 0.0070837 0.3150361 ENSG00000145113 MUC4 mucin 4, cell surface associated 3 195746765 195811973 protein_coding HGNC:7514 -1.4992918 -13.2877124 0.4786188 1.3087808 0.6727919 2.4232062 2.4232062 0.8652286 -2.4988840
ENSG00000176788 0.8442757 -0.8542313 7.211782 8.801667 0.0071174 0.3150361 ENSG00000176788 BASP1 brain abundant membrane attached signal protein 1 5 17065598 17276843 protein_coding HGNC:957 6.0517650 6.1244867 6.6644343 6.7642978 7.4919873 5.2884494 5.2884494 7.0229599 6.0885841
ENSG00000162068 -3.7619565 -1.1150322 2.908693 7.631549 0.0071223 0.3150361 ENSG00000162068 NTN3 netrin 3 16 2471297 2474145 protein_coding HGNC:8030 2.2577626 2.9660995 -0.8100477 -0.7805322 -13.2877124 1.5593592 1.5593592 -1.3800518 2.6549737
ENSG00000157227 1.4976029 1.1306270 9.008907 8.793395 0.0071370 0.3150361 ENSG00000157227 MMP14 matrix metallopeptidase 14 14 22836560 22849041 protein_coding HGNC:7160 8.0086166 7.5620529 8.8410617 9.5892213 9.7481994 9.0448361 9.0448362 9.4435408 7.8025448
ENSG00000011465 2.3917382 1.9241638 9.049624 8.783495 0.0071617 0.3150361 ENSG00000011465 DCN decorin 12 91140484 91183217 protein_coding HGNC:2705 7.2471987 5.1797891 8.7405021 8.8721524 9.4110514 8.6884179 8.6884179 9.0380751 6.5558945
ENSG00000168497 -4.7928719 2.6965445 2.790227 10.221245 0.0071849 0.3150361 ENSG00000168497 CAVIN2 caveolae associated protein 2 2 191834310 191847088 protein_coding HGNC:10690 -0.3173997 0.4993229 -13.2877124 -13.2877124 -13.2877124 2.9278320 2.9278320 -13.2877124 0.1479995
ENSG00000198053 1.2029250 -0.6060259 5.159176 8.779691 0.0071958 0.3150361 ENSG00000198053 SIRPA signal regulatory protein alpha 20 1894167 1940592 protein_coding HGNC:9662 1.8143367 2.8643583 3.5732702 3.6791247 3.8947781 1.8649710 1.8649710 3.7219950 2.4328389
ENSG00000127241 2.6386687 1.9710233 8.270414 8.754858 0.0072340 0.3156105 ENSG00000127241 MASP1 MBL associated serine protease 1 3 187217282 187291980 protein_coding HGNC:6901 5.9903845 3.8662873 7.5566542 7.7265656 7.8909737 7.3788332 7.3788332 7.7311765 5.2883324
ENSG00000028277 -0.4536936 -2.8384879 4.632106 8.757658 0.0072808 0.3165492 ENSG00000028277 POU2F2 POU class 2 homeobox 2 19 42086110 42196585 protein_coding HGNC:9213 2.4169319 3.5445655 4.6460360 1.8400523 1.6469557 -0.7198466 -0.7198466 3.4037110 3.0882256
ENSG00000145734 -0.5959134 -7.5172364 4.125774 8.759797 0.0073103 0.3167356 ENSG00000145734 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 5 71455651 71567820 protein_coding HGNC:13652 1.8917547 2.1823993 0.7751719 0.1641684 0.7239875 -13.2877124 -13.2877124 0.5797131 2.0443840
ENSG00000090054 1.7696176 0.9256671 5.011911 8.703867 0.0074114 0.3178411 ENSG00000090054 SPTLC1 serine palmitoyltransferase long chain base subunit 1 9 92000087 92115413 protein_coding HGNC:11277 2.7302737 3.9640928 5.1391956 4.3994215 4.6489444 3.7729060 3.7729055 4.7625843 3.4752470
ENSG00000105379 2.3316142 1.4359784 4.117241 8.644349 0.0074956 0.3178411 ENSG00000105379 ETFB electron transfer flavoprotein subunit beta 19 51345169 51366388 protein_coding HGNC:3482 0.5815479 1.6996431 5.5321106 4.2384646 5.3877518 4.6732668 4.6732670 5.1567263 1.2463047
ENSG00000143341 1.7597773 0.9560991 6.553141 8.654642 0.0074957 0.3178411 ENSG00000143341 HMCN1 hemicentin 1 1 185734391 186190949 protein_coding HGNC:19194 1.3239482 0.3793348 3.0275469 3.4951952 2.9888117 3.0499149 3.0499149 3.1894825 0.9276105
ENSG00000155463 1.1497424 1.6644536 5.260553 8.650169 0.0075376 0.3178411 ENSG00000155463 OXA1L OXA1L mitochondrial inner membrane protein 14 22766522 22773042 protein_coding HGNC:8526 3.3869610 3.7032128 4.8673630 4.6431075 5.3151750 5.2177917 5.2177918 4.9694641 3.5537353
ENSG00000183840 -1.7146648 -2.7429832 5.760923 8.644740 0.0075463 0.3178411 ENSG00000183840 GPR39 G protein-coupled receptor 39 2 132416805 132646582 protein_coding HGNC:4496 4.8841966 6.3153986 2.7519189 4.6990095 4.2361668 3.0220789 3.0220789 4.1031089 5.7704396
ENSG00000164692 2.5120841 1.3544465 12.339077 8.631842 0.0075505 0.3178411 ENSG00000164692 COL1A2 collagen type I alpha 2 chain 7 94394895 94431227 protein_coding HGNC:2198 9.0557982 7.1719427 10.4058781 10.8336342 11.2958216 9.6853324 9.6853324 10.8907014 8.4017154
ENSG00000070495 0.9478971 -1.5484153 4.787353 8.644911 0.0075548 0.3178411 ENSG00000070495 JMJD6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase 17 76712832 76726799 protein_coding HGNC:19355 3.2507054 3.1844565 4.0948029 3.5037699 3.5808431 1.7227965 1.7227965 3.7511711 3.2179612
ENSG00000136235 1.8209778 1.1722562 7.159510 8.626946 0.0075658 0.3178411 ENSG00000136235 GPNMB glycoprotein nmb 7 23235967 23275108 protein_coding HGNC:4462 5.0291233 3.9570420 6.0489696 6.7623986 6.2424117 5.8024183 5.8024184 6.3836086 4.5904565
ENSG00000103196 2.5196750 1.4107902 6.051489 8.630481 0.0075777 0.3178411 ENSG00000103196 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 16 84819985 84920768 protein_coding HGNC:25248 3.1456453 2.8679431 3.7294147 5.4701741 5.0010722 3.3612619 3.3612616 4.9007277 3.0134658
ENSG00000231925 5.2799945 6.2131618 6.078774 8.270593 0.0075887 0.3178411 ENSG00000231925 TAPBP TAP binding protein 6 33299694 33314284 protein_coding HGNC:11566 1.0637735 -13.2877124 5.9444599 0.9459373 4.5972238 5.4238913 5.4238913 4.8697772 0.0638425
ENSG00000155760 2.3354955 0.3965506 4.750898 8.602519 0.0076906 0.3190376 ENSG00000155760 FZD7 frizzled class receptor 7 2 202033855 202038441 protein_coding HGNC:4045 1.4305460 0.3947852 2.7020398 3.1928177 4.2199304 1.4896940 1.4896940 3.5145854 1.0036864
ENSG00000184232 3.9540534 2.9413573 4.222890 8.141627 0.0077744 0.3190376 ENSG00000184232 OAF out at first homolog 11 120211032 120230334 protein_coding HGNC:28752 0.5822419 -13.2877124 2.7797493 4.2563222 5.3627546 3.6963860 3.6963860 4.4838443 -0.4176617
ENSG00000120885 -0.0757908 2.6162443 9.314702 8.544943 0.0077853 0.3190376 ENSG00000120885 CLU clusterin 8 27596917 27614700 protein_coding HGNC:2095 8.7217550 8.3809251 9.7077418 8.4009937 5.2899658 11.6660223 11.6660223 8.6598439 8.5613815
ENSG00000121440 1.1676343 -0.3027284 6.068769 8.537602 0.0078117 0.3190376 ENSG00000121440 PDZRN3 PDZ domain containing ring finger 3 3 73382431 73624941 protein_coding HGNC:17704 3.8284742 3.2499892 4.4358884 5.2008153 4.8843534 3.4740414 3.4740414 4.8737807 3.5680345
ENSG00000184047 1.3237223 -2.5197452 4.079643 8.566909 0.0078219 0.3190376 ENSG00000184047 DIABLO diablo IAP-binding mitochondrial protein 12 122207668 122226062 protein_coding HGNC:21528 2.1106779 1.5023403 4.3350617 3.7725823 3.6011257 -0.9814969 -0.9814969 3.9381195 1.8383387
ENSG00000158714 -1.6702919 -0.2937571 4.834561 8.553140 0.0078484 0.3190376 ENSG00000158714 SLAMF8 SLAM family member 8 1 159826811 159837492 protein_coding HGNC:21391 3.5250310 3.9527684 2.4536638 2.4708981 1.0644207 3.5035998 3.5035998 2.1279934 3.7546942
ENSG00000282367 3.7434263 3.7266551 3.668321 7.845984 0.0078779 0.3190376 ENSG00000282367 PTDSS2 phosphatidylserine synthase 2 HSCHR11_1_CTG8 3536 21040 protein_coding HGNC:15463 -13.2877124 0.7052959 3.2182545 2.7034139 5.2992502 3.8174993 3.8174993 4.2015337 -0.2946157
ENSG00000120868 -0.0065341 -2.7535680 6.755042 8.508427 0.0078881 0.3190376 ENSG00000120868 APAF1 apoptotic peptidase activating factor 1 12 98645149 98735433 protein_coding HGNC:576 4.7080411 5.9260650 4.8815621 5.1718719 6.4897166 1.9005059 1.9005059 5.6948184 5.4419501
ENSG00000137801 1.2490877 -1.7281518 10.692451 8.505790 0.0078935 0.3190376 ENSG00000137801 THBS1 thrombospondin 1 15 39581079 39599466 protein_coding HGNC:11785 7.7937426 5.9782940 8.5761599 8.6797334 8.5179261 6.0191308 6.0191308 8.5928325 7.1545180
ENSG00000097007 1.2115588 0.6893666 7.163707 8.503001 0.0079029 0.3190376 ENSG00000097007 ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase 9 130713043 130887675 protein_coding HGNC:76 5.0732506 3.7919137 4.9223429 5.0300211 5.8506567 4.5942027 4.5942028 5.3303458 4.5703919
ENSG00000234507 5.9480928 9.2793374 4.257380 9.096056 0.0079605 0.3190376 ENSG00000234507 BRD2 bromodomain containing 2 HSCHR6_MHC_COX_CTG1 4380869 4393720 protein_coding HGNC:1103 -13.2877124 -13.2877124 -13.2877124 -13.2877124 3.1298905 5.2354273 5.2354273 1.5449611 -13.2877124
ENSG00000153132 1.3171710 -1.3153845 4.300604 8.498753 0.0079967 0.3190376 ENSG00000153132 CLGN calmegin 4 140388453 140427661 protein_coding HGNC:2060 1.2795420 2.5293710 3.5752442 3.2838981 3.4487628 0.7178315 0.7178315 3.4408738 2.0357678
ENSG00000112531 1.2990685 0.6102112 5.650951 8.468893 0.0080130 0.3190376 ENSG00000112531 QKI QKI, KH domain containing RNA binding 6 163414000 163578592 protein_coding HGNC:21100 4.1798207 4.3264283 6.0437524 5.6967415 5.9158122 5.2837215 5.2837214 5.8924697 4.2549863
ENSG00000163814 1.0150892 2.8902595 3.562296 8.367851 0.0080458 0.3190376 ENSG00000163814 CDCP1 CUB domain containing protein 1 3 45082277 45146422 protein_coding HGNC:24357 1.5812760 0.6957240 0.6187301 0.6506975 -0.3547041 3.0279177 3.0279177 0.3738731 1.2054057
ENSG00000185008 -1.3988802 -1.6499001 4.785187 8.470601 0.0080734 0.3190376 ENSG00000185008 ROBO2 roundabout guidance receptor 2 3 75906695 77649964 protein_coding HGNC:10250 2.9529329 4.0608567 1.9931439 3.0732384 4.4897613 2.5897654 2.5897654 3.5387469 3.6107341
ENSG00000173258 -2.1850287 -2.6539820 3.600994 8.208037 0.0080741 0.3190376 ENSG00000173258 ZNF483 zinc finger protein 483 9 111525159 111577844 protein_coding HGNC:23384 2.3448151 3.1355168 0.2515325 1.0406049 0.1742300 0.3007868 0.3007868 0.5446249 2.7936714
ENSG00000175920 -1.4428158 -0.5217291 5.066629 8.461356 0.0080932 0.3190376 ENSG00000175920 DOK7 docking protein 7 4 3463306 3501473 protein_coding HGNC:26594 4.4193989 5.2302877 3.3374325 3.8949588 3.0868040 5.2527051 5.2527052 3.4802923 4.8810802
ENSG00000196411 1.8001597 1.5432105 5.073963 8.453672 0.0080951 0.3190376 ENSG00000196411 EPHB4 EPH receptor B4 7 100802565 100827523 protein_coding HGNC:3395 3.3608550 3.0747984 4.3794211 4.7120284 3.9550488 4.6937291 4.6937291 4.3815596 3.2249050
ENSG00000229006 0.0000000 7.6035818 2.581606 11.328969 0.0081085 0.3190376 ENSG00000229006 TRIM27 tripartite motif containing 27 HSCHR6_MHC_SSTO_CTG1 212404 233381 protein_coding HGNC:9975 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 3.1245088 3.1245088 -13.2877124 -13.2877124
ENSG00000072657 0.2271392 1.5628873 6.673650 8.426065 0.0081251 0.3190376 ENSG00000072657 TRHDE thyrotropin releasing hormone degrading enzyme 12 72087266 72670758 protein_coding HGNC:30748 2.8135553 2.3295628 3.1832774 3.1401736 2.3897989 4.2357068 4.2357068 2.9474060 2.5917605
ENSG00000214562 -0.9008437 0.8575698 5.355617 8.426646 0.0081744 0.3191768 ENSG00000214562 NUTM2D NUT family member 2D 10 87357720 87370695 protein_coding HGNC:23447 5.1836880 4.6169141 3.6438047 3.6239690 4.2796883 5.6041278 5.6041280 3.8826871 4.9279566
ENSG00000137727 3.0254943 1.2968623 3.621382 8.138688 0.0081814 0.3191768 ENSG00000137727 ARHGAP20 Rho GTPase activating protein 20 11 110577042 110713189 protein_coding HGNC:18357 -1.9150486 -1.3283081 3.0896241 0.5020240 1.9368663 -0.1563071 -0.1563071 2.1972021 -1.5920534
ENSG00000232653 -2.2653301 -0.6718703 4.108386 8.274100 0.0082049 0.3191768 ENSG00000232653 GOLGA8N golgin A8 family member N 15 32593456 32607310 protein_coding HGNC:44405 4.1079493 3.3303064 1.3561528 1.8656603 3.1601407 3.0269164 3.0269164 2.3356673 3.7709012
ENSG00000276657 6.8220327 6.7777340 3.462158 9.053968 0.0082516 0.3198113 ENSG00000276657 PYCR3 pyrroline-5-carboxylate reductase 3 HSCHR8_3_CTG7 93953 99813 protein_coding HGNC:25846 -13.2877124 -13.2877124 3.3815370 1.0967200 2.9584932 2.6462200 2.6462200 2.7608332 -13.2877124
ENSG00000204950 -1.6582192 -0.0652654 5.477647 8.395776 0.0082721 0.3198113 ENSG00000204950 LRRC10B leucine rich repeat containing 10B 11 61508749 61511018 protein_coding HGNC:37215 5.2201983 4.3289092 3.7214358 3.3888889 2.5766605 4.8730183 4.8730183 3.3040839 4.8423154
ENSG00000274334 9.2216031 0.0000000 5.279139 8.975021 0.0083594 0.3219020 ENSG00000274334 VASN vasorin HSCHR16_3_CTG1 74171 85851 protein_coding HGNC:18517 -13.2877124 -13.2877124 -13.2877124 5.0947682 5.7235556 -13.2877124 -13.2877124 4.8581899 -13.2877124
ENSG00000102109 -1.2147808 -1.4493868 6.169402 8.338541 0.0083904 0.3219020 ENSG00000102109 PCSK1N proprotein convertase subtilisin/kexin type 1 inhibitor X 48831096 48835610 protein_coding HGNC:17301 7.1618302 7.0396252 6.5641057 5.6670823 5.5857720 5.7198901 5.7198901 6.0109329 7.1020212
ENSG00000129167 -1.8569796 -7.2735530 3.516488 8.185533 0.0084030 0.3219020 ENSG00000129167 TPH1 tryptophan hydroxylase 1 11 18017555 18046269 protein_coding HGNC:12008 3.0864732 1.0149358 0.6208716 -0.7621793 -0.1827484 -13.2877124 -13.2877124 0.0040497 2.3943747
ENSG00000146674 2.0598383 1.4042692 9.000774 8.302295 0.0084884 0.3220955 ENSG00000146674 IGFBP3 insulin like growth factor binding protein 3 7 45912245 45921874 protein_coding HGNC:5472 6.7138242 5.3119325 7.7151404 8.8608191 8.4699451 7.7203526 7.7203526 8.4229317 6.1768529
ENSG00000175497 -2.4955429 -0.0362775 4.352532 8.160525 0.0084969 0.3220955 ENSG00000175497 DPP10 dipeptidyl peptidase like 10 2 114442299 115845780 protein_coding HGNC:20823 4.1465260 2.3058045 1.2339580 0.2646289 1.5814158 3.9887087 3.9887087 1.1256676 3.5017478
ENSG00000156113 -1.7094327 -2.0008258 4.999288 8.313311 0.0085351 0.3220955 ENSG00000156113 KCNMA1 potassium calcium-activated channel subfamily M alpha 1 10 76869601 77638369 protein_coding HGNC:6284 2.9899345 4.5051795 3.1285052 2.4459176 1.9748417 2.5054512 2.5054512 2.5949352 3.9379647
ENSG00000132386 1.3343565 1.9861405 8.109443 8.277704 0.0085644 0.3220955 ENSG00000132386 SERPINF1 serpin family F member 1 17 1762029 1777565 protein_coding HGNC:8824 8.0459464 7.1931549 8.9585823 8.7498725 8.7672408 9.2687472 9.2687471 8.8283758 7.6816657
ENSG00000115738 1.0679820 -0.5596402 5.547913 8.281619 0.0085661 0.3220955 ENSG00000115738 ID2 inhibitor of DNA binding 2 2 8678845 8684461 protein_coding HGNC:5361 5.2774461 5.9939216 6.7307626 5.4948930 7.4567360 4.9934876 4.9934873 6.7680758 5.6797115
ENSG00000148082 1.8236804 0.5809730 5.213023 8.287534 0.0085743 0.3220955 ENSG00000148082 SHC3 SHC adaptor protein 3 9 89005771 89178818 protein_coding HGNC:18181 0.9012040 -0.1449575 2.8092142 2.5404412 1.7718716 1.1454010 1.1454010 2.4366650 0.4709429
ENSG00000161558 -3.5954725 -6.4096991 2.650444 7.208860 0.0085875 0.3220955 ENSG00000161558 TMEM143 transmembrane protein 143 19 48332356 48364059 protein_coding HGNC:25603 3.5891461 3.9796707 -13.2877124 1.9384653 2.3693118 -13.2877124 -13.2877124 1.5849663 3.7975823
ENSG00000112773 -1.1850244 -0.1724907 6.495634 8.264664 0.0086136 0.3221119 ENSG00000112773 TENT5A terminal nucleotidyltransferase 5A 6 81491439 81752774 protein_coding HGNC:18345 4.4274467 4.5708165 3.7461020 3.2813282 2.8165528 4.3009655 4.3009657 3.3308122 4.5009117
ENSG00000187498 1.3903107 2.0673741 8.220106 8.239059 0.0086845 0.3228828 ENSG00000187498 COL4A1 collagen type IV alpha 1 chain 13 110148963 110307202 protein_coding HGNC:2202 4.6516425 3.7481263 5.7809915 6.0945119 5.3467788 6.3278673 6.3278673 5.7727126 4.2694888
ENSG00000178568 -6.8014600 -6.8014600 2.828783 9.739971 0.0086856 0.3228828 ENSG00000178568 ERBB4 erb-b2 receptor tyrosine kinase 4 2 211375717 212538841 protein_coding HGNC:3432 -0.3673428 1.0881552 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 0.5366637
ENSG00000074276 -0.8978472 -1.3497908 6.124753 8.225750 0.0087360 0.3237999 ENSG00000074276 CDHR2 cadherin related family member 2 5 176542511 176595974 protein_coding HGNC:18231 6.7140662 7.1555155 6.7000648 6.6265694 6.3077437 6.0870694 6.0870694 6.5545847 6.9516102
ENSG00000008513 0.7890515 -1.0454159 6.068149 8.209422 0.0087835 0.3239888 ENSG00000008513 ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 8 133454848 133571926 protein_coding HGNC:10862 3.2564958 2.6352664 3.6090382 4.9639046 3.7113458 1.8446383 1.8446383 4.2354691 2.9790637
ENSG00000100077 -2.6285201 -4.1567636 3.499673 7.776197 0.0087927 0.3239888 ENSG00000100077 GRK3 G protein-coupled receptor kinase 3 22 25564675 25729294 protein_coding HGNC:290 0.4006538 1.6091748 -1.6294518 -0.5973258 -13.2877124 -1.3667269 -1.3667269 -1.6078088 1.1279234
ENSG00000106624 1.8591048 0.9989620 6.608480 8.195312 0.0088284 0.3243547 ENSG00000106624 AEBP1 AE binding protein 1 7 44104345 44114562 protein_coding HGNC:303 3.9146648 4.0825068 5.1704669 4.9004437 6.6771004 4.2447228 4.2447227 5.8091644 4.0010249
ENSG00000070214 1.7168984 1.4999214 5.671570 8.171495 0.0089243 0.3255904 ENSG00000070214 SLC44A1 solute carrier family 44 member 1 9 105244622 105439171 protein_coding HGNC:18798 2.0895076 3.2220029 2.7539149 3.0629423 5.2632637 3.2081898 3.2081898 4.1567285 2.7641383
ENSG00000228960 3.2999762 1.6719793 5.930101 8.162357 0.0089823 0.3255904 ENSG00000228960 OR2A9P 7 144299373 144300305 transcribed_unprocessed_pseudogene HGNC:8236 3.8781614 -13.2877124 6.8994339 6.6081954 5.6560169 4.5093999 4.5093999 6.4776940 2.8781711
ENSG00000142871 2.3617214 -0.0521812 7.536972 8.141172 0.0090001 0.3255904 ENSG00000142871 CCN1 cellular communication network factor 1 1 85580761 85584589 protein_coding HGNC:2654 5.5012952 2.4580699 7.3050217 7.5212970 7.0220443 4.7641323 4.7641322 7.2971246 4.6664805
ENSG00000213694 1.4819396 0.0000072 5.602657 8.144309 0.0090057 0.3255904 ENSG00000213694 S1PR3 sphingosine-1-phosphate receptor 3 9 88990863 89005155 protein_coding HGNC:3167 2.5161675 2.6601437 4.2807533 3.2598079 4.0926772 1.9260457 1.9260457 3.9410241 2.5899509
ENSG00000155252 1.0912842 0.6666540 6.500187 8.139407 0.0090080 0.3255904 ENSG00000155252 PI4K2A phosphatidylinositol 4-kinase type 2 alpha 10 97640671 97676434 protein_coding HGNC:30031 3.5570715 3.6824840 4.7310000 4.7624931 4.9581953 4.3442031 4.3442029 4.8207814 3.6211399
ENSG00000148841 1.1129203 -0.9624185 6.085731 8.137156 0.0090175 0.3255904 ENSG00000148841 ITPRIP inositol 1,4,5-trisphosphate receptor interacting protein 10 104309698 104338465 protein_coding HGNC:29370 3.1460708 2.7207292 3.9293271 3.9093185 5.0745749 2.2109137 2.2109137 4.4140901 2.9490186
ENSG00000232632 -3.1224349 -8.3985884 4.290040 7.919610 0.0090922 0.3271474 ENSG00000232632 GABBR1 gamma-aminobutyric acid type B receptor subunit 1 HSCHR6_MHC_COX_CTG1 1042093 1119641 protein_coding HGNC:4070 3.1430479 3.5259625 -13.2877124 -13.2877124 2.1808296 -13.2877124 -13.2877124 0.5959304 3.3471720
ENSG00000171298 -0.7170919 0.5377297 7.820378 8.099094 0.0091383 0.3271474 ENSG00000171298 GAA alpha glucosidase 17 80101533 80119881 protein_coding HGNC:4065 6.6549946 6.6072208 6.5432613 6.2373712 5.7740603 7.2845047 7.2845047 6.2187372 6.6313054
ENSG00000142197 -0.8539536 -1.4974633 5.727260 8.104171 0.0091388 0.3271474 ENSG00000142197 DOP1B DOP1 leucine zipper like protein B 21 36156782 36294274 protein_coding HGNC:1291 3.4026345 4.5444722 2.5357623 4.1995926 2.2629692 1.7623271 1.7623271 3.2716547 4.0836875
ENSG00000110900 -1.0575616 0.4237915 6.768321 8.091716 0.0091690 0.3272972 ENSG00000110900 TSPAN11 tetraspanin 11 12 30926428 30996602 protein_coding HGNC:30795 4.0936006 5.3567977 4.0479572 4.5957492 3.3300498 5.3669852 5.3669852 4.0811513 4.8592500
ENSG00000104936 -0.9765887 -0.1895446 7.195304 8.060884 0.0092687 0.3299200 ENSG00000104936 DMPK DM1 protein kinase 19 45769709 45782552 protein_coding HGNC:2933 6.1931104 6.4788247 5.7517284 5.3115344 5.3189654 6.1650997 6.1650997 5.4758706 6.3430290
ENSG00000148143 0.7269259 -0.5883770 6.355541 8.029504 0.0093772 0.3321646 ENSG00000148143 ZNF462 zinc finger protein 462 9 106863166 107013634 protein_coding HGNC:21684 4.1168643 2.7774671 3.4617204 3.6264283 3.4048557 3.0009048 3.0009048 3.5007606 3.5973215
ENSG00000242511 -6.7704463 -6.7704463 2.807107 9.454260 0.0093993 0.3321646 ENSG00000242511 RPL23AP1 HSCHR6_MHC_SSTO_CTG1 1032898 1033368 transcribed_processed_pseudogene HGNC:10318 -13.2877124 7.0585888 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 6.0585899
ENSG00000185624 1.0099956 1.3008021 8.851348 8.017157 0.0094161 0.3321646 ENSG00000185624 P4HB prolyl 4-hydroxylase subunit beta 17 81843159 81860856 protein_coding HGNC:8548 7.2975634 6.9117810 8.2136506 8.1177841 8.1898927 8.5283039 8.5283041 8.1743485 7.1175288
ENSG00000273686 -2.1186070 -1.6016561 8.423470 8.005088 0.0094588 0.3321646 ENSG00000273686 B2M beta-2-microglobulin HSCHR15_3_CTG8 34826 42225 protein_coding HGNC:914 9.0142582 11.3939102 9.3099702 8.4917397 8.3565842 9.1161840 9.1161841 8.7840557 10.6474829
ENSG00000078687 -1.7831153 -1.0031677 4.433800 8.020536 0.0094640 0.3321646 ENSG00000078687 TNRC6C trinucleotide repeat containing adaptor 6C 17 77958703 78108822 protein_coding HGNC:29318 2.7356002 2.3130900 0.6626576 2.1062599 3.2395817 1.1691939 1.1691939 2.3536934 2.5397574
ENSG00000139352 -0.7771320 0.1265148 10.252700 7.960614 0.0096142 0.3356249 ENSG00000139352 ASCL1 achaete-scute family bHLH transcription factor 1 12 102957674 102960513 protein_coding HGNC:738 9.2544235 9.2809293 8.6832022 8.5855829 8.5419974 9.4552502 9.4552502 8.6048089 9.2677373
ENSG00000269955 -6.7602478 -6.7602478 2.799974 9.359545 0.0096523 0.3356249 ENSG00000269955 FMC1-LUC7L2 FMC1-LUC7L2 readthrough 7 139341360 139422599 protein_coding HGNC:44671 -13.2877124 4.2350405 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 -13.2877124 3.2350481
ENSG00000232439 -1.5476975 -0.1185244 4.421783 7.951555 0.0097080 0.3356249 ENSG00000232439 RPL18AP7 3 38526802 38527325 processed_pseudogene HGNC:35607 6.5845319 6.8820318 5.1945903 5.3543659 5.4273159 6.6855828 6.6855828 5.3286649 6.7409367
ENSG00000170801 2.8616262 2.1326436 4.923599 7.928393 0.0097592 0.3356249 ENSG00000170801 HTRA3 HtrA serine peptidase 3 4 8269754 8307098 protein_coding HGNC:30406 1.9785563 -0.5262256 3.1752317 4.8742770 4.3874272 3.4946586 3.4946586 4.3047917 1.2126795
ENSG00000072195 -1.3718970 -1.5935148 4.746188 7.943936 0.0097666 0.3356249 ENSG00000072195 SPEG striated muscle enriched protein kinase 2 219434843 219493629 protein_coding HGNC:16901 2.1759138 3.7493855 3.7907817 3.9196031 2.5112077 0.7453793 0.7453793 3.5308125 3.1673043
ENSG00000196562 2.2624293 2.4109172 7.798095 7.918125 0.0097687 0.3356249 ENSG00000196562 SULF2 sulfatase 2 20 47656197 47786616 protein_coding HGNC:20392 4.9355765 3.3663151 5.6392349 7.3069101 6.9941930 7.0507912 7.0507913 6.8059330 4.3545551
ENSG00000130940 -1.6139825 -0.1835508 5.474095 7.929285 0.0097930 0.3356249 ENSG00000130940 CASZ1 castor zinc finger 1 1 10636604 10796650 protein_coding HGNC:26002 4.1616572 5.3470356 2.5788103 2.5098443 0.8418773 2.9506819 2.9506819 2.1659049 4.8728131
ENSG00000218475 -1.2466235 -0.3458774 5.847177 7.917251 0.0097983 0.3356249 ENSG00000218475 ACTG1P18 6 101430411 101431553 processed_pseudogene HGNC:51498 5.9501242 6.8159376 5.3892835 5.0132667 5.4310758 6.1288211 6.1288211 5.2897242 6.4470297
ENSG00000213222 1.4327415 0.2999752 6.814995 7.902044 0.0098280 0.3356249 ENSG00000213222 TOMM40P4 2 131723253 131724279 processed_pseudogene HGNC:54633 6.5417759 5.4559897 7.4973892 7.8067829 7.7645718 6.5050878 6.5050878 7.6959430 6.0987059
ENSG00000169122 1.7285734 0.3191359 5.237063 7.906492 0.0098485 0.3356249 ENSG00000169122 FAM110B family with sequence similarity 110 member B 8 57994523 58204279 protein_coding HGNC:28587 2.6109776 2.9508672 4.6142961 4.3541932 4.3683504 2.5962995 2.5962995 4.4506464 2.7909088
ENSG00000128641 1.5962314 0.4494822 5.834767 7.891755 0.0098779 0.3356249 ENSG00000128641 MYO1B myosin IB 2 191245185 191425389 protein_coding HGNC:7596 3.2404780 1.7245372 3.7453523 4.4336761 4.1705278 3.1374929 3.1374929 4.1437559 2.6730831
ENSG00000137693 1.9157391 1.3870228 4.683162 7.909298 0.0098831 0.3356249 ENSG00000137693 YAP1 Yes1 associated transcriptional regulator 11 102110447 102233424 protein_coding HGNC:16262 2.4513454 2.0604943 3.5679193 2.8411264 3.9158419 3.0323691 3.0323691 3.5075081 2.2691158
ENSG00000184545 6.2713213 0.0000000 2.707484 8.441158 0.0099832 0.3381090 ENSG00000184545 DUSP8 dual specificity phosphatase 8 11 1554051 1572271 protein_coding HGNC:3074 -13.2877124 -13.2877124 1.4001018 0.9260207 0.9960611 -13.2877124 -13.2877124 1.1229549 -13.2877124
outPath = "output/day28/DEG"
Test = "day28.SCN2A.vs.WT"
qlf = glmQLFTest(fit, coef=2)
sig.gene.summary(qlf)
##        q0.005 q0.01 q0.05  q0.2 p0.01
## Down        0     0     1    86   190
## NotSig  12565 12565 12560 12294 12056
## Up          0     0     4   185   319
deg = attach_annotations_by_p(qlf, 0.01)
maxAveTPM = data.frame(maxAveTPM = apply(deg[,c("SCN2A", "WT")], 1, max))
deg = cbind(deg, maxAveTPM)
# deg %>%
#   kbl() %>%
#   kable_styling(bootstrap_options = c("striped", "hover", "condensed")) %>%
#   scroll_box(width = "100%", height = "300px")

write.table(deg, file=paste(outPath,ExperimentName,Test,"txt", sep="."), quote=FALSE, row.names=TRUE, col.names=TRUE, sep="\t")

#MvsA plot
ggplot(data = as.data.frame(topTags(qlf, n=NULL)) %>% arrange(desc(PValue)), aes(x=logCPM, y=logFC)) +
  geom_point(aes(color=PValue<0.01)) +
  scale_color_manual(values = xgfs_normal12[c(13,2)]) +
  theme_minimal()

#Volcano plot
ggplot(data = as.data.frame(topTags(qlf, n=NULL)) %>% arrange(desc(PValue)), aes(x=logFC, y=-log10(PValue))) + 
  geom_point(aes(color=PValue<0.01)) +
  scale_color_manual(values = xgfs_normal12[c(13,2)]) +
  theme_minimal()

SCN2AUp = row.names(deg[deg[,"logFC"] > 0 & deg[,"maxAveTPM"] > log2(0.1),])
SCN2ADown = row.names(deg[deg[,"logFC"] < 0 & deg[,"maxAveTPM"] > log2(0.1),])
Test = "day28.CHD2.vs.WT"
qlf = glmQLFTest(fit, coef=3)
sig.gene.summary(qlf)
##        q0.005 q0.01 q0.05  q0.2 p0.01
## Down        0     0     0     2    78
## NotSig  12565 12565 12565 12558 12386
## Up          0     0     0     5   101
deg = attach_annotations_by_p(qlf, 0.01)
maxAveTPM = data.frame(maxAveTPM = apply(deg[,c("CHD2", "WT")], 1, max))
deg = cbind(deg, maxAveTPM)
# deg %>%
#   kbl() %>%
#   kable_styling(bootstrap_options = c("striped", "hover", "condensed")) %>%
#   scroll_box(width = "100%", height = "300px")

write.table(deg, file=paste(outPath,ExperimentName,Test,"txt", sep="."), quote=FALSE, row.names=TRUE, col.names=TRUE, sep="\t")

#MvsA plot
ggplot(data = as.data.frame(topTags(qlf, n=NULL)) %>% arrange(desc(PValue)), aes(x=logCPM, y=logFC)) +
  geom_point(aes(color=PValue<0.01)) +
  scale_color_manual(values = xgfs_normal12[c(13,2)]) +
  theme_minimal()

#Volcano plot
ggplot(data = as.data.frame(topTags(qlf, n=NULL)) %>% arrange(desc(PValue)), aes(x=logFC, y=-log10(PValue))) + 
  geom_point(aes(color=PValue<0.01)) +
  scale_color_manual(values = xgfs_normal12[c(13,2)]) +
  theme_minimal()

CHD2Up = row.names(deg[deg[,"logFC"] > 0 & deg[,"maxAveTPM"] > log2(0.1),])
CHD2Down = row.names(deg[deg[,"logFC"] < 0 & deg[,"maxAveTPM"] > log2(0.1),])
Test = "day28"
venn.diagram(list(CHD2 = CHD2Up, SCN2A = SCN2AUp), filename = paste(outPath,ExperimentName,Test,"up.png", sep="."), imagetype = "png", main = paste(Test, "up regulated", sep = " "), col = xgfs_normal12[1:2])
## [1] 1
venn.diagram(list(CHD2 = CHD2Down, SCN2A = SCN2ADown), filename = paste(outPath,ExperimentName,Test,"down.png", sep="."), imagetype = "png", main = paste(Test, "down regulated", sep = " "), col = xgfs_normal12[1:2])
## [1] 1
SCN2AUp.d28 = SCN2AUp
SCN2ADown.d28 = SCN2ADown
CHD2Up.d28 = CHD2Up
CHD2Down.d28 = CHD2Down
Venn diagram up regulated
Venn diagram up regulated
Venn diagram down regulated
Venn diagram down regulated

Note:

Compare between time points

Take the DEGs from each timepoint and examine the overlaps

outPath = "output/misc/DEG"
Test = "SCN2A"
venn.diagram(list( 
  FB = c(SCN2AUp.FB, SCN2ADown.FB), 
  day_10 = c(SCN2AUp.d10, SCN2ADown.d10), 
  day_22 = c(SCN2AUp.d22, SCN2ADown.d22), 
  day_28 = c(SCN2AUp.d28, SCN2ADown.d28)), 
  filename = paste(outPath,ExperimentName,Test,"png", sep="."), 
  imagetype = "png", main = paste(Test, "DEGs per differentiation stage", sep = " "), 
  col = xgfs_normal12[c(4,6,7,9)])
## [1] 1
Test = "CHD2"
venn.diagram(list( 
  FB = c(CHD2Up.FB, CHD2Down.FB), 
  day_10 = c(CHD2Up.d10, CHD2Down.d10), 
  day_22 = c(CHD2Up.d22, CHD2Down.d22), 
  day_28 = c(CHD2Up.d28, CHD2Down.d28)), 
  filename = paste(outPath,ExperimentName,Test,"png", sep="."), 
  imagetype = "png", main = paste(Test, "DEGs per differentiation stage", sep = " "), 
  col = xgfs_normal12[c(4,6,7,9)])
## [1] 1
# Stats
hypergeometric.tests = rbind(
  SCN2A.FBvd10 = hypergeometric_test_of_lists(union(FB.genes.expressed,d10.genes.expressed),c(SCN2AUp.FB, SCN2ADown.FB),c(SCN2AUp.d10, SCN2ADown.d10)),
  SCN2A.FBvd22 = hypergeometric_test_of_lists(union(FB.genes.expressed,d22.genes.expressed),c(SCN2AUp.FB, SCN2ADown.FB),c(SCN2AUp.d22, SCN2ADown.d22)),
  SCN2A.FBvd28 = hypergeometric_test_of_lists(union(FB.genes.expressed,d28.genes.expressed),c(SCN2AUp.d28, SCN2ADown.d28),c(SCN2AUp.FB, SCN2ADown.FB)),
  SCN2A.d10vd22 = hypergeometric_test_of_lists(union(d22.genes.expressed,d10.genes.expressed),c(SCN2AUp.d22, SCN2ADown.d22),c(SCN2AUp.d10, SCN2ADown.d10)),
  SCN2A.d10vd28 = hypergeometric_test_of_lists(union(d28.genes.expressed,d10.genes.expressed),c(SCN2AUp.d28, SCN2ADown.d28),c(SCN2AUp.d10, SCN2ADown.d10)),
  SCN2A.d22vd28 = hypergeometric_test_of_lists(union(d28.genes.expressed,d22.genes.expressed),c(SCN2AUp.d28, SCN2ADown.d28),c(SCN2AUp.d22, SCN2ADown.d22)), 
  CHD2.FBvd10 = hypergeometric_test_of_lists(union(FB.genes.expressed,d10.genes.expressed),c(CHD2Up.FB, CHD2Down.FB),c(CHD2Up.d10, CHD2Down.d10)),
  CHD2.FBvd22 = hypergeometric_test_of_lists(union(FB.genes.expressed,d22.genes.expressed),c(CHD2Up.FB, CHD2Down.FB),c(CHD2Up.d22, CHD2Down.d22)),
  CHD2.FBvd28 = hypergeometric_test_of_lists(union(FB.genes.expressed,d28.genes.expressed),c(CHD2Up.d28, CHD2Down.d28),c(CHD2Up.FB, CHD2Down.FB)),
  CHD2.d10vd22 = hypergeometric_test_of_lists(union(d22.genes.expressed,d10.genes.expressed),c(CHD2Up.d22, CHD2Down.d22),c(CHD2Up.d10, CHD2Down.d10)),
  CHD2.d10vd28 = hypergeometric_test_of_lists(union(d28.genes.expressed,d10.genes.expressed),c(CHD2Up.d28, CHD2Down.d28),c(CHD2Up.d10, CHD2Down.d10)),
  CHD2.d22vd28 = hypergeometric_test_of_lists(union(d28.genes.expressed,d22.genes.expressed),c(CHD2Up.d28, CHD2Down.d28),c(CHD2Up.d22, CHD2Down.d22)))

hypergeometric.tests %>%
  kbl() %>%
  kable_styling(bootstrap_options = c("striped", "hover", "condensed")) %>%
  scroll_box(width = "100%", height = "300px")
total.genes list.1 list.2 intersection PValue
SCN2A.FBvd10 14404 402 144 12 0.0007132
SCN2A.FBvd22 13458 402 200 13 0.0071271
SCN2A.FBvd28 14169 509 402 33 0.0000088
SCN2A.d10vd22 13543 200 144 12 0.0000015
SCN2A.d10vd28 14088 509 144 16 0.0000644
SCN2A.d22vd28 12792 509 200 53 0.0000000
CHD2.FBvd10 14404 195 271 5 0.3056768
CHD2.FBvd22 13458 195 182 8 0.0050461
CHD2.FBvd28 14169 179 195 7 0.0119882
CHD2.d10vd22 13543 182 271 43 0.0000000
CHD2.d10vd28 14088 179 271 21 0.0000000
CHD2.d22vd28 12792 179 182 23 0.0000000

Venn diagram SCN2A Venn diagram CHD2

Note: The low numbers of genes showing consistent differential expression between iNeuron time points is of potential concern. In the day

Heatmaps for genesets

DEE genes

Generate heat map for wild-type genotype cell lines based on the Genes4Epilepsy list

DEEMatrix = gene.TPM[ match(DEE_List,row.names(gene.TPM)) , colnames(gene.TPM) %in% WTsamples]
#ensembl = useMart("ensembl",dataset="hsapiens_gene_ensembl")
Annotations = getBM(attributes = c('hgnc_symbol','ensembl_gene_id'),
                     filters = 'ensembl_gene_id',
                     values = DEE_List,
                     mart = ensembl)
Annotations = left_join(data.frame(ensembl_gene_id = DEE_List), Annotations, by="ensembl_gene_id")
row.names(DEEMatrix) <- Annotations$hgnc_symbol

pheatmap(log2(DEEMatrix + 0.0001), color = colorRampPalette(rev(brewer.pal(n = 7, name ="RdBu"))) (100), 
                   angle_col = 90, cluster_cols = TRUE, cluster_rows = FALSE,
                   main = "Expression (log2 TPM)")

png(filename=paste("output/misc/DEE",ExperimentName,"heatmap","png", sep="."), height=9130, width=980, bg="white")
    pheatmap(log2(DEEMatrix + 0.0001), color = colorRampPalette(rev(brewer.pal(n = 7, name ="RdBu"))) (100), 
                   angle_col = 90, cluster_cols = TRUE, cluster_rows = FALSE,
                   main = "Expression (log2 TPM)")

dev.off()
## png 
##   3
DEEMatrix = gene.TPM[ match(DEE_biobank_list$ensembl_gene_id,row.names(gene.TPM)), colnames(gene.TPM) %in% WTsamples]
ensembl = useMart("ensembl",dataset="hsapiens_gene_ensembl")
Annotations = getBM(attributes = c('hgnc_symbol','ensembl_gene_id'),
                     filters = 'ensembl_gene_id',
                     values = DEE_biobank_list$ensembl_gene_id,
                     mart = ensembl)
Annotations = left_join(DEE_biobank_list, Annotations, by="ensembl_gene_id")
row.names(DEEMatrix) <- Annotations$hgnc_symbol

pheatmap(log2(DEEMatrix + 0.0001), color = colorRampPalette(rev(brewer.pal(n = 7, name ="RdBu"))) (100), 
                   angle_col = 90, cluster_cols = TRUE, cluster_rows = FALSE,
                   main = "Expression (log2 TPM)")

png(filename=paste("output/misc/DEE_biobank",ExperimentName,"heatmap","png", sep="."), height=1500, width=980, bg="white")
    pheatmap(log2(DEEMatrix + 0.0001), color = colorRampPalette(rev(brewer.pal(n = 7, name ="RdBu"))) (100), 
                   angle_col = 90, cluster_cols = TRUE, cluster_rows = TRUE,
                   main = "Expression (log2 TPM)", fontsize = 16)

dev.off()
## png 
##   3

References

Mapping and counts data

Patro R, Duggal G, Love MI, Irizarry RA, Kingsford C. Salmon: fast and bias-aware quantification of transcript expression using dual-phase inference. Nat Methods. 2017 Apr;14(4):417–9.

Love MI, Soneson C, Hickey PF, Johnson LK, Pierce NT, Shepherd L, Morgan M, Patro R. Tximeta: Reference sequence checksums for provenance identification in RNA-seq PLOS Computational Biology 16(2): e1007664

Differential gene expression

McCarthy DJ, Chen Y, Smyth GK. Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation. Nucleic Acids Res. 2012 May;40(10):4288–97.

Gene annotations

Durinck S, Spellman PT, Birney E, Huber W. Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt. , Nature Protocols 4, 1184-1191 (2009).

Durinck S, Moreau Y, Kasprzyk A, Davis S, De Moor , Brazma A, Huber W. BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis. Bioinformatics 21, 3439-3440 (2005).

Gene Ontology

Raudvere, U., CHD2lberg, L., Kuzmin, I., Arak, T., Adler, P., Peterson, H. and Vilo, J., 2019. g: Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update). Nucleic Acids Research, 47(W1), pp.W191-W198

Supek F, Bošnjak M, Škunca N, Šmuc T. REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms. PLOS ONE. 2011 Jul 18;6(7):e21800.

Differential transcript and exon usage

Love MI, Soneson C and Patro R. Swimming downstream: statistical analysis of differential transcript usage following Salmon quantification [version 3; peer review: 3 approved]. F1000Research 2018, 7:952

Anders S, Reyes A, Huber W. Detecting differential usage of exons from RNA-seq data. Genome Res. 2012 Oct 1;22(10):2008–17.

Session Information

This information documents the computing environment used to do this analysis to enable others to replicate these findings.

sessionInfo()
## R version 4.4.1 (2024-06-14 ucrt)
## Platform: x86_64-w64-mingw32/x64
## Running under: Windows 10 x64 (build 19045)
## 
## Matrix products: default
## 
## 
## locale:
## [1] LC_COLLATE=English_Australia.utf8  LC_CTYPE=English_Australia.utf8    LC_MONETARY=English_Australia.utf8 LC_NUMERIC=C                      
## [5] LC_TIME=English_Australia.utf8    
## 
## time zone: Australia/Adelaide
## tzcode source: internal
## 
## attached base packages:
## [1] grid      stats4    stats     graphics  grDevices utils     datasets  methods   base     
## 
## other attached packages:
##  [1] biomaRt_2.60.1              rtracklayer_1.64.0          VennDiagram_1.7.3           futile.logger_1.4.3         pheatmap_1.0.12            
##  [6] ggplot2_3.5.1               RColorBrewer_1.1-3          edgeR_4.2.1                 limma_3.60.4                SummarizedExperiment_1.34.0
## [11] Biobase_2.64.0              GenomicRanges_1.56.1        GenomeInfoDb_1.40.1         IRanges_2.38.1              S4Vectors_0.42.1           
## [16] BiocGenerics_0.50.0         MatrixGenerics_1.16.0       matrixStats_1.4.1           tximeta_1.22.1              reshape2_1.4.4             
## [21] dplyr_1.1.4                 kableExtra_1.4.0            rgl_1.3.1                  
## 
## loaded via a namespace (and not attached):
##   [1] rstudioapi_0.16.0        jsonlite_1.8.8           tximport_1.32.0          magrittr_2.0.3           GenomicFeatures_1.56.0  
##   [6] farver_2.1.2             rmarkdown_2.28           BiocIO_1.14.0            zlibbioc_1.50.0          vctrs_0.6.5             
##  [11] memoise_2.0.1            Rsamtools_2.20.0         RCurl_1.98-1.16          base64enc_0.1-3          htmltools_0.5.8.1       
##  [16] S4Arrays_1.4.1           progress_1.2.3           AnnotationHub_3.12.0     lambda.r_1.2.4           curl_5.2.2              
##  [21] SparseArray_1.4.8        sass_0.4.9               bslib_0.8.0              htmlwidgets_1.6.4        plyr_1.8.9              
##  [26] httr2_1.0.4              futile.options_1.0.1     cachem_1.1.0             GenomicAlignments_1.40.0 lifecycle_1.0.4         
##  [31] pkgconfig_2.0.3          Matrix_1.7-0             R6_2.5.1                 fastmap_1.2.0            GenomeInfoDbData_1.2.12 
##  [36] digest_0.6.37            colorspace_2.1-1         AnnotationDbi_1.66.0     RSQLite_2.3.7            labeling_0.4.3          
##  [41] filelock_1.0.3           fansi_1.0.6              httr_1.4.7               abind_1.4-8              compiler_4.4.1          
##  [46] bit64_4.0.5              withr_3.0.1              BiocParallel_1.38.0      DBI_1.2.3                highr_0.11              
##  [51] Rttf2pt1_1.3.12          rappdirs_0.3.3           DelayedArray_0.30.1      rjson_0.2.23             tools_4.4.1             
##  [56] extrafontdb_1.0          glue_1.7.0               restfulr_0.0.15          generics_0.1.3           gtable_0.3.5            
##  [61] tzdb_0.4.0               ensembldb_2.28.1         hms_1.1.3                xml2_1.3.6               utf8_1.2.4              
##  [66] XVector_0.44.0           BiocVersion_3.19.1       pillar_1.9.0             stringr_1.5.1            vroom_1.6.5             
##  [71] splines_4.4.1            BiocFileCache_2.12.0     lattice_0.22-6           bit_4.0.5                tidyselect_1.2.1        
##  [76] locfit_1.5-9.10          Biostrings_2.72.1        knitr_1.48               ProtGenerics_1.36.0      svglite_2.1.3           
##  [81] xfun_0.47                statmod_1.5.0            stringi_1.8.4            UCSC.utils_1.0.0         lazyeval_0.2.2          
##  [86] yaml_2.3.10              evaluate_1.0.0           codetools_0.2-20         extrafont_0.19           tibble_3.2.1            
##  [91] BiocManager_1.30.25      cli_3.6.3                systemfonts_1.1.0        jquerylib_0.1.4          munsell_0.5.1           
##  [96] Rcpp_1.0.13              dbplyr_2.5.0             png_0.1-8                XML_3.99-0.17            parallel_4.4.1          
## [101] readr_2.1.5              blob_1.2.4               prettyunits_1.2.0        AnnotationFilter_1.28.0  bitops_1.0-8            
## [106] txdbmaker_1.0.1          viridisLite_0.4.2        scales_1.3.0             purrr_1.0.2              crayon_1.5.3            
## [111] rlang_1.1.4              formatR_1.14             KEGGREST_1.44.1