The following document is a summary of the analysis method of RNASeq
data generated from transdifferentiated fibroblasts from individuals
with DEE due to variants in CHD2 or SCN2A.
The samples consist of differeing numbers of biological replicates of
each genotype (WT = 4, SCN2A =3 and CHD2 =2) extracted from cultured
cells as fibroblasts then days 10, 22 and 28. Sample libraries were
prepared for sequencing by the service provider (SAGC) using the
ribosomal reduction, mRNA enrichment according to the maufacturers
protocol (Nugen Universal Plus Total RNA-seq protocol (Part No. 15044223
Rev. B).). Strand-specific sequencing was carried by SAGC in two batches
on MGI-T7 and MGI-G400 platforms respectively using a 2 x 150 bp, paired
end read strategy. Prior to differential gene expression analysis,
RNAseq data were psuedo-mapped to the ENSEMBL v84 set of human
transcripts using the Salmon pipeline refer to our protocol
document and git
repository for details.
This sets up paths to files, imports metadata associated with the samples and defines sample groups for the QC and statistical tests.
counts_dir = "data/salmon"
ExperimentName = "RNASeq.DEE.iNeuron.10.2024"
pdataFile = "data/metadata/pdata.csv"
sampleList = "data/metadata/sampleOrder.txt"
EpilepsyGenes = "data/reference/EpilepsyGenes_v2024-09.tsv"
These are loaded up front so you know what the requirements are to run the script.
library(dplyr)
library(reshape2)
library(tximeta)
library(SummarizedExperiment)
library(edgeR)
library(RColorBrewer)
library(ggplot2)
library(pheatmap)
library(VennDiagram)
library(rtracklayer)
library(biomaRt)
An independent file is set up pdata.csv which contains information about the samples; pdata is short for phenotypic data. Generally the more information the better, e.g. cell type, differentiation state, batches, RIN scores, sex, species, etc.
pdata<-read.table(file=pdataFile, header=TRUE, sep=",", as.is = FALSE)
rownames(pdata)<-pdata[,"sampleCode"] # set row names to sample names
pdata.current<-pdata # sometimes you want to throw out a sample or use a subset. designating pdata.current allows you to temporarily change this without altering your original pdata table
samples<-as.character(pdata.current$sampleCode)
quantFiles <- file.path(counts_dir, pdata.current$folder,"quant.sf")
pdata.current <- data.frame(files = quantFiles, names = samples, pdata.current) # sets the format specifically required by tximeta
kbl(pdata.current) %>%
kable_styling(bootstrap_options = c("striped", "hover", "condensed")) %>%
scroll_box(width = "100%", height = "300px")
| files | names | sampleCode | folder | individual | timepoint | diffState | sex | batch | genotype | replicate | RIN | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CON_1_FB | data/salmon/8YC-FB-24-05549/quant.sf | CON_1_FB | CON_1_FB | 8YC-FB-24-05549 | 8YC | day_0 | fibroblast | F | SAGCQR1262 | WT | 1 | 9.9 |
| CON_1_d10 | data/salmon/8YC-10-24-05558/quant.sf | CON_1_d10 | CON_1_d10 | 8YC-10-24-05558 | 8YC | day_10 | day_10 | F | SAGCQR1262 | WT | 1 | 9.9 |
| CON_1_d22 | data/salmon/8YC_22/quant.sf | CON_1_d22 | CON_1_d22 | 8YC_22 | 8YC | day_22 | day_22 | F | SAGCQR1293 | WT | 1 | 9.8 |
| CON_2_FB | data/salmon/FC45-FB-24-05548/quant.sf | CON_2_FB | CON_2_FB | FC45-FB-24-05548 | FC45 | day_0 | fibroblast | F | SAGCQR1262 | WT | 1 | 9.6 |
| CON_2_d10 | data/salmon/FC45-10-24-05557/quant.sf | CON_2_d10 | CON_2_d10 | FC45-10-24-05557 | FC45 | day_10 | day_10 | F | SAGCQR1262 | WT | 1 | 9.9 |
| CON_2_d22 | data/salmon/FC45_22/quant.sf | CON_2_d22 | CON_2_d22 | FC45_22 | FC45 | day_22 | day_22 | F | SAGCQR1293 | WT | 1 | 10.0 |
| CON_2_d28 | data/salmon/FC45_28/quant.sf | CON_2_d28 | CON_2_d28 | FC45_28 | FC45 | day_28 | day_28 | F | SAGCQR1293 | WT | 1 | 10.0 |
| CON_3_FB_A | data/salmon/MC2936-FB-24-05546/quant.sf | CON_3_FB_A | CON_3_FB_A | MC2936-FB-24-05546 | MC2936 | day_0 | fibroblast | M | SAGCQR1262 | WT | 1 | 8.9 |
| CON_3_FB_B | data/salmon/MC2936_FB/quant.sf | CON_3_FB_B | CON_3_FB_B | MC2936_FB | MC2936 | day_0 | fibroblast | M | SAGCQR1293 | WT | 2 | 10.0 |
| CON_3_d10 | data/salmon/MC2936-10-24-05555/quant.sf | CON_3_d10 | CON_3_d10 | MC2936-10-24-05555 | MC2936 | day_10 | day_10 | M | SAGCQR1262 | WT | 1 | 9.7 |
| CON_3_d22 | data/salmon/MC2936_22/quant.sf | CON_3_d22 | CON_3_d22 | MC2936_22 | MC2936 | day_22 | day_22 | M | SAGCQR1293 | WT | 1 | 9.8 |
| CON_3_d28 | data/salmon/MC2936_28/quant.sf | CON_3_d28 | CON_3_d28 | MC2936_28 | MC2936 | day_28 | day_28 | M | SAGCQR1293 | WT | 1 | 9.7 |
| CON_4_FB_A | data/salmon/MC44-FB-24-05547/quant.sf | CON_4_FB_A | CON_4_FB_A | MC44-FB-24-05547 | MC44 | day_0 | fibroblast | M | SAGCQR1262 | WT | 1 | 9.8 |
| CON_4_FB_B | data/salmon/MC44_FB/quant.sf | CON_4_FB_B | CON_4_FB_B | MC44_FB | MC44 | day_0 | fibroblast | M | SAGCQR1293 | WT | 2 | 10.0 |
| CON_4_d10 | data/salmon/MC44-10-24-05556/quant.sf | CON_4_d10 | CON_4_d10 | MC44-10-24-05556 | MC44 | day_10 | day_10 | M | SAGCQR1262 | WT | 1 | 10.0 |
| CON_4_d22 | data/salmon/MC44_22/quant.sf | CON_4_d22 | CON_4_d22 | MC44_22 | MC44 | day_22 | day_22 | M | SAGCQR1293 | WT | 1 | 10.0 |
| SCN2A_1_FB | data/salmon/61103MS-FB-24-05542/quant.sf | SCN2A_1_FB | SCN2A_1_FB | 61103MS-FB-24-05542 | 61103 | day_0 | fibroblast | M | SAGCQR1262 | SCN2A | 1 | 9.6 |
| SCN2A_1_d10 | data/salmon/61103MS-10-24-05551/quant.sf | SCN2A_1_d10 | SCN2A_1_d10 | 61103MS-10-24-05551 | 61103 | day_10 | day_10 | M | SAGCQR1262 | SCN2A | 1 | 9.9 |
| SCN2A_1_d22 | data/salmon/61103MS_22/quant.sf | SCN2A_1_d22 | SCN2A_1_d22 | 61103MS_22 | 61103 | day_22 | day_22 | M | SAGCQR1293 | SCN2A | 1 | 9.9 |
| SCN2A_1_d28 | data/salmon/61103MS_28/quant.sf | SCN2A_1_d28 | SCN2A_1_d28 | 61103MS_28 | 61103 | day_28 | day_28 | M | SAGCQR1293 | SCN2A | 1 | 9.8 |
| SCN2A_2_FB | data/salmon/61107AM-FB-24-05541/quant.sf | SCN2A_2_FB | SCN2A_2_FB | 61107AM-FB-24-05541 | 61107 | day_0 | fibroblast | F | SAGCQR1262 | SCN2A | 1 | 10.0 |
| SCN2A_2_d10 | data/salmon/61107AM-1-24-05550/quant.sf | SCN2A_2_d10 | SCN2A_2_d10 | 61107AM-1-24-05550 | 61107 | day_10 | day_10 | F | SAGCQR1262 | SCN2A | 1 | 9.9 |
| SCN2A_2_d22 | data/salmon/61107AM_22/quant.sf | SCN2A_2_d22 | SCN2A_2_d22 | 61107AM_22 | 61107 | day_22 | day_22 | F | SAGCQR1293 | SCN2A | 1 | 9.9 |
| SCN2A_2_d28 | data/salmon/61107AM_28/quant.sf | SCN2A_2_d28 | SCN2A_2_d28 | 61107AM_28 | 61107 | day_28 | day_28 | F | SAGCQR1293 | SCN2A | 1 | 9.8 |
| SCN2A_3_FB | data/salmon/61166AR-FB-24-05543/quant.sf | SCN2A_3_FB | SCN2A_3_FB | 61166AR-FB-24-05543 | 61166 | day_0 | fibroblast | F | SAGCQR1262 | SCN2A | 1 | 9.5 |
| SCN2A_3_d10 | data/salmon/61166AR-10-24-05552/quant.sf | SCN2A_3_d10 | SCN2A_3_d10 | 61166AR-10-24-05552 | 61166 | day_10 | day_10 | F | SAGCQR1262 | SCN2A | 1 | 9.9 |
| SCN2A_3_d22 | data/salmon/61166AR_22/quant.sf | SCN2A_3_d22 | SCN2A_3_d22 | 61166AR_22 | 61166 | day_22 | day_22 | F | SAGCQR1293 | SCN2A | 1 | 9.8 |
| SCN2A_3_d28 | data/salmon/61166AR_28/quant.sf | SCN2A_3_d28 | SCN2A_3_d28 | 61166AR_28 | 61166 | day_28 | day_28 | F | SAGCQR1293 | SCN2A | 1 | 10.0 |
| CHD2_1_FB | data/salmon/61161RG-FB-24-05544/quant.sf | CHD2_1_FB | CHD2_1_FB | 61161RG-FB-24-05544 | 61161 | day_0 | fibroblast | F | SAGCQR1262 | CHD2 | 1 | 9.7 |
| CHD2_1_d10 | data/salmon/61161RG-10-24-05553/quant.sf | CHD2_1_d10 | CHD2_1_d10 | 61161RG-10-24-05553 | 61161 | day_10 | day_10 | F | SAGCQR1262 | CHD2 | 1 | 9.9 |
| CHD2_1_d22 | data/salmon/61161RG_22/quant.sf | CHD2_1_d22 | CHD2_1_d22 | 61161RG_22 | 61161 | day_22 | day_22 | F | SAGCQR1293 | CHD2 | 1 | 9.9 |
| CHD2_1_d28 | data/salmon/61161RG_28/quant.sf | CHD2_1_d28 | CHD2_1_d28 | 61161RG_28 | 61161 | day_28 | day_28 | F | SAGCQR1293 | CHD2 | 1 | 9.8 |
| CHD2_2_FB | data/salmon/61171SW-FB-24-05545/quant.sf | CHD2_2_FB | CHD2_2_FB | 61171SW-FB-24-05545 | 61171 | day_0 | fibroblast | M | SAGCQR1262 | CHD2 | 1 | 9.6 |
| CHD2_2_d10 | data/salmon/61171SW-10-24-05554/quant.sf | CHD2_2_d10 | CHD2_2_d10 | 61171SW-10-24-05554 | 61171 | day_10 | day_10 | M | SAGCQR1262 | CHD2 | 1 | 10.0 |
| CHD2_2_d22 | data/salmon/61171SW_22/quant.sf | CHD2_2_d22 | CHD2_2_d22 | 61171SW_22 | 61171 | day_22 | day_22 | M | SAGCQR1293 | CHD2 | 1 | 9.9 |
These are complex data with genotype and differentiation state to be considered. The script below sets up these variables for the series of comparisons to be made with these data. There are four differentiation states (fibroblast, day 10, day 22 and day 28) and three genotypes (SCN2A, CHD2 and WT). There are several hypotheses that can be tested. 1. Transdifferentiation of fibroblasts leads to expression of neuronal marker genes. 2. WT, SCN2A and CHD2 genotypes confer differences in gene expression patterns at each diffrentiation time point.
# Set up vectors of categories
# Grouped categories
diffState = factor(paste(pdata.current$diffState))
genotype = factor(paste(pdata.current$genotype))
diffVsGeno = factor(paste(pdata.current$diffState, pdata.current$genotype, sep="."))
sex = factor(paste(pdata.current$sex))
# Define colour palettes for graphing
# I use the palettes suggested here https://tsitsul.in/blog/coloropt/ but there are many other options
# e.g. https://medialab.github.io/iwanthue/ or https://www.simplifiedsciencepublishing.com/resources/best-color-palettes-for-scientific-figures-and-data-visualizations
xgfs_normal12 = c("#ebac23", "#b80058", "#008cf9", "#006e00", "#00bbad", "#d163e6", "#b24502", "#ff9287", "#5954d6", "#00c6f8", "#878500", "#00a76c", "#bdbdbd")
pal4cellType = xgfs_normal12[c(1:length(levels(diffState)))]
pal4genotype = xgfs_normal12[c(1:length(levels(genotype)))]
pal4diffVsGeno = xgfs_normal12[c(1:length(levels(diffVsGeno)))]
pal4Sex = xgfs_normal12[c(6,9)] # It's sterotyped but it works
blue_col_scale = brewer.pal(4,"Blues")
pal4RIN = colorRampPalette(blue_col_scale)
# Gene and Transcript Lists
diffMarkerGenes = data.frame(ensembl_gene_id = c("ENSG00000111704",
"ENSG00000204531",
"ENSG00000181449",
"ENSG00000007372",
"ENSG00000163508",
"ENSG00000170558",
"ENSG00000132688",
"ENSG00000148773",
"ENSG00000077279",
"ENSG00000258947"))
# Custom sample order
sampleOrder = read.table(sampleList)
sampleOrder = as.vector(sampleOrder[,1])
WTsamples = pdata.current$sampleCode[pdata.current$genotype == "WT"]
SCN2Asamples = pdata.current$sampleCode[pdata.current$genotype == "SCN2A"]
CHD2samples = pdata.current$sampleCode[pdata.current$genotype == "CHD2"]
Epilepsy_gene_list = read.table(EpilepsyGenes, header = TRUE, sep = "\t")
DEE_List = Epilepsy_gene_list$ensembl_gene_id[grep("DEE", Epilepsy_gene_list$Phenotype)] # column names of the original file https://github.com/bahlolab/Genes4Epilepsy/releases/tag/v2024_09 have been edited
DEE_biobank_list = read.table("data/reference/EpilepsyBiobank.list.txt", col.names = "ensembl_gene_id")
SCN2A_gene = "ENSG00000136531"
SCN2A_transcripts = c("ENST00000375437",
"ENST00000636071",
"ENST00000636985",
"ENST00000631182",
"ENST00000283256",
"ENST00000637266") # GENCODE only
CHD2_gene = "ENSG00000173575"
CHD2_transcripts = c("ENST00000394196",
"ENST00000626874",
"ENST00000628375",
"ENST00000625990",
"ENST00000420239",
"ENST00000626782",
"ENST00000627622",
"ENST00000629346") # GENCODE only
Counts data were generated using the Salmon pipeline. The individual quant.sf files contain counts and TPM data which will be extracted here and combined into transcript or gene counts.
imported.counts <- tximeta(coldata = pdata.current)
## importing quantifications
## reading in files with read_tsv
## 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
## found matching transcriptome:
## [ Ensembl - Homo sapiens - release 97 ]
## loading existing EnsDb created: 2022-03-29 04:40:14
## loading existing transcript ranges created: 2022-03-29 04:40:25
summarised.genes = summarizeToGene(imported.counts)
## loading existing EnsDb created: 2022-03-29 04:40:14
## obtaining transcript-to-gene mapping from database
## loading existing gene ranges created: 2022-03-29 04:52:57
## gene ranges assigned by total range of isoforms, see `assignRanges`
## summarizing abundance
## summarizing counts
## summarizing length
The counts.current object is not strictly necessary but it can be helpful if subsetting counts into smaller groups or switching between summarised gene counts or transcript counts.
gene.counts = assays(summarised.genes)[["counts"]]
transcript.counts = assays(imported.counts)[["counts"]]
counts.current<-gene.counts[,samples]
These are normalized counts data and give an indication of the level of expression using the TPM units. It’s important to note that edgeR uses CPM to calculate differential expression so if you manually calculate fold changes from these data then you will likely not get the same result however the trend should be the same. This short blog post goes through some of the differences in RNA-seq measures https://haroldpimentel.wordpress.com/2014/05/08/what-the-fpkm-a-review-rna-seq-expression-units/
gene.TPM <- assays(summarised.genes)[["abundance"]]
transcript.TPM <- assays(imported.counts)[["abundance"]]
current.TPM = gene.TPM
selectSamples = WTsamples
expressionMatrix = log(gene.TPM[ , selectSamples ], 2)
ensembl = useMart("ensembl",dataset="hsapiens_gene_ensembl")
Annotations = getBM(attributes = c('hgnc_symbol','ensembl_gene_id','entrezgene_description'),
filters = 'ensembl_gene_id',
values = gsub("\\..*","",row.names(gene.TPM)),
mart = ensembl)
expressionMatrix = cbind(expressionMatrix, data.frame(ensembl_gene_id=gsub("\\..*","",row.names(expressionMatrix))))
expressionMatrix = left_join(expressionMatrix, Annotations, by="ensembl_gene_id")
expressionMatrix = distinct(expressionMatrix, ensembl_gene_id, .keep_all = TRUE)
rownames(expressionMatrix)<-expressionMatrix$ensembl_gene_id
write.table(expressionMatrix, file = "output/misc/WT_FB_to_day_28_iN.log2.TPM.txt", quote = FALSE, row.names=TRUE, col.names=TRUE, sep = "\t")
The multidimensional scaling (MDS) plot shows the largest distance between samples based on the ranked largest fold changes in gene expression between each sample pair. Only the first two factors are shown in the 2D plot. Each cell fraction has separated into a group in the graph with the nuclear and cytoplasmic samples showing some variation but overall these data look good. All graphs are the same but the colours change to indicate different classes of covariates to help in their interpretation.
## png
## 2
You can look through the following plots to explore the sources of variation
plotMDS(d, labels=pdata.current$sampleCode, col = pal4diffVsGeno[factor(diffVsGeno)], main = "Colour by Major Groups")
plotMDS(d, labels=pdata.current$sampleCode, col = pal4cellType[factor(diffState)], main = "Colour by Cell Type")
plotMDS(d, labels=pdata.current$sampleCode, col = xgfs_normal12[c(1:length(levels(pdata.current$genotype)))][factor(pdata.current$genotype)], main = "Colour by Genotype")
plotMDS(d, labels=pdata.current$sampleCode, col = xgfs_normal12[c(1:length(levels(pdata.current$batch)))][factor(pdata.current$batch)], main = "Colour by Batch")
plotMDS(d, labels=pdata.current$sampleCode, col = pal4Sex[factor(pdata.current$sex)], main = "Colour by Sex")
plotMDS(d, labels=pdata.current$sampleCode, col = pal4RIN(nrow(pdata.current))[findInterval(pdata$RIN, sort(c(0:10)))], main = "Colour by RIN") #[findInterval(pdata$RIN, sort(pdata.current$RIN))]
Note: CON3 (MC2936) sits apart from all other samples at all timepoints.
Library size is taken into account by edgeR during the analysis so that counts are comparable for each gene or transcripts across all samples. Note that edgeR does not perform any normalisation of counts data between genes or transcript (such as TPM or FPKM) because comparisons are only made per transcript or per gene their length is irrelevant.
#par(mar = c(7, 4, 2, 2) + 0.5)
fudge = 7.5 # Hacky way of getting the x-axis labels positioned correctly in this plot you will need to adjust each time. Go down if the labels are longer than the graph and up if the graph is longer than the labels.
barplot(d$samples$lib.size,
xlab="Samples",
ylab="Library Size",
col = pal4genotype[factor(pdata.current$genotype)])
text(seq(1, nrow(pdata.current) + fudge, by = (nrow(pdata.current) + fudge)/nrow(pdata.current)),
par("usr")[3] - 0.25,
cex=0.6,
adj = 1.1,
labels=pdata.current$sampleCode,
xpd=TRUE,
srt=45)
Like the MDS plot, the principle components analysis plot is another way of looking at differences between the sample in bulk and exploring the sources of sample variation. Unfortunately this won’t render in the html, but you can see the table containing the PCA output below and some images that have been pasted in looking at each dimension.
pc <- princomp(counts.current, cor=TRUE, scores=TRUE)
summary(pc)
## Importance of components:
## Comp.1 Comp.2 Comp.3 Comp.4 Comp.5 Comp.6 Comp.7 Comp.8 Comp.9 Comp.10
## Standard deviation 5.3468110 2.2249377 0.7560462 0.59185112 0.387271098 0.361847092 0.257175861 0.1867847901 0.1811372314 0.1503774026
## Proportion of Variance 0.8168111 0.1414385 0.0163316 0.01000822 0.004285112 0.003740952 0.001889698 0.0009968159 0.0009374485 0.0006460961
## Cumulative Proportion 0.8168111 0.9582496 0.9745812 0.98458939 0.988874502 0.992615454 0.994505152 0.9955019680 0.9964394165 0.9970855126
## Comp.11 Comp.12 Comp.13 Comp.14 Comp.15 Comp.16 Comp.17 Comp.18 Comp.19
## Standard deviation 0.1239639395 0.1133897931 0.1062937527 0.0987557313 0.0922427773 0.0830794502 0.081162716 0.0782005508 0.0679125485
## Proportion of Variance 0.0004390588 0.0003673499 0.0003228103 0.0002786484 0.0002431066 0.0001972056 0.000188211 0.0001747236 0.0001317747
## Cumulative Proportion 0.9975245714 0.9978919213 0.9982147316 0.9984933800 0.9987364866 0.9989336922 0.999121903 0.9992966268 0.9994284015
## Comp.20 Comp.21 Comp.22 Comp.23 Comp.24 Comp.25 Comp.26 Comp.27 Comp.28
## Standard deviation 0.0618664973 0.0528069028 0.049940264 4.433936e-02 0.0431201468 3.733637e-02 3.216225e-02 0.0301325991 2.874627e-02
## Proportion of Variance 0.0001093561 0.0000796734 0.000071258 5.617082e-05 0.0000531242 3.982871e-05 2.955459e-05 0.0000259421 2.360995e-05
## Cumulative Proportion 0.9995377576 0.9996174310 0.999688689 9.997449e-01 0.9997979840 9.998378e-01 9.998674e-01 0.9998933094 9.999169e-01
## Comp.29 Comp.30 Comp.31 Comp.32 Comp.33 Comp.34 Comp.35
## Standard deviation 2.642349e-02 2.347309e-02 2.210091e-02 1.957644e-02 1.786769e-02 1.617995e-02 1.434929e-02
## Proportion of Variance 1.994859e-05 1.574246e-05 1.395572e-05 1.094963e-05 9.121553e-06 7.479735e-06 5.882918e-06
## Cumulative Proportion 9.999369e-01 9.999526e-01 9.999666e-01 9.999775e-01 9.999866e-01 9.999941e-01 1.000000e+00
plot3d(pc$loadings[,1:3], col=xgfs_normal12[c(1:length(levels(pdata.current$genotype)))][factor(pdata.current$genotype)], size=2)
text3d(pc$loadings[,1:3], text=colnames(counts.current), col = xgfs_normal12[c(1:length(levels(pdata.current$genotype)))][factor(pdata.current$genotype)])
Note: The first 6 principle components comprise 99% of the variance. The 3D PCA plot, separates different cell types from each other.
Note: There are no samples to exclude on the basis of the QC analysis above. Here, we filter out anything which isn’t an annotated gene so that we can interpret the analysis. We also reset any groups that might have changed if samples need to be removed from the analysis
This part of the scripts applies normalisation to account for library size and removes genes that have low or no expression spanning over multiple experimental groups (we don’t want to throw out a transcript which is not expressed in just one group as that could be very important). Low abundance transcripts in RNA-seq data are prone to high variation and will often “pollute” the final list of differentially expressed genes due to small variations in read counts per sample that result in apparently high fold changes (e.g. CPM=1 vs CPM=2 is a twofold change but CPM=101 vs CPM=102 is the same change in read count but not a large fold change). edgeR has ways of compressing fold changes when the overall counts are low to help deal with this. We then make some plots to look at the shape of the data to check it fits the typical model expected for RNAseq data.
d = DGEList(counts=counts.current, group=diffVsGeno)
keep = filterByExpr(d)
d = d[keep, , keep.lib.sizes=FALSE]
d = calcNormFactors(d)
f <- factor(diffVsGeno, levels=levels(diffVsGeno))
design = model.matrix(~0+f)
rownames(design) <- colnames(d)
d = estimateDisp(d, design, robust = TRUE)
The Mean Variance plot shows the pooled variance of the counts from each sample, divided by a scaling factor calculated above (mostly this is library size). The black line indicates a standard Poisson distribution (it is usual for all other data points on the plot to be above this line) and the blue line indicates the prediction for a negative binomial model (we expect our data to lie close to this line). The blue dots are the average gene-level variance (the grey dots are the original values). The red “X” are the common dispersions of transcripts (averaged for transcripts within the bin it represents). Overall these data look good and follow the negative binomial model reasonably closely.
The biological coefficient of variation (BCV) plot shows the differences in variation per gene compared to average gene expression (standard deviation / average expression). You can see that genes with low expression have higher variation.
The Quasi-Likelihood dispersion plot shows the transformation of read count data (black to red) after applying normalisation.
These plots support that these data are of good quality and will be good to perform differential gene expression (or differential export) analyses.
## Warning in plot.window(...): "plot.first" is not a graphical parameter
## Warning in plot.xy(xy, type, ...): "plot.first" is not a graphical parameter
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plotMeanVar(d, show.tagwise.vars=TRUE, show.raw.vars = TRUE, NBline=TRUE)
## Warning in plot.window(...): "plot.first" is not a graphical parameter
## Warning in plot.xy(xy, type, ...): "plot.first" is not a graphical parameter
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plotBCV(d)
plotQLDisp(fit)
Plot out the expression of the target genes in each time point to check their expression levels.
current.gene = SCN2A_gene
gene_data = cbind(pdata.current[ , c("sampleCode", "genotype", "timepoint")], current.TPM[current.gene,])
colnames(gene_data) <- c("sampleCode", "genotype", "timepoint", "SCN2A")
gene_data = mutate(gene_data, genotype.timepoint = paste(genotype, timepoint, sep="."))
gene_data$genotype.timepoint = factor(gene_data$genotype.timepoint)
#png(filename=paste("output/qc/TPM",current.gene,ExperimentName,Test,"png", sep="."), height=980, width=980, bg="white")
ggplot(data = gene_data, aes( x = genotype.timepoint, y = SCN2A, colour = factor(genotype))) +
geom_boxplot(lwd = 1, outlier.shape = NA) +
scale_color_manual(values = pal4genotype) + #[factor(pdata.current$genotype)]) +
geom_jitter(color = "grey") +
xlab("Genotype at developmental timepoint") +
ylab(paste("TPM SCN2A (", current.gene, ")", sep ="")) +
labs(color="Genotype") +
theme_bw() +
theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust = 1))
#dev.off()
current.gene = CHD2_gene
gene_data = cbind(pdata.current[ , c("sampleCode", "genotype", "timepoint")], current.TPM[current.gene,])
colnames(gene_data) <- c("sampleCode", "genotype", "timepoint", "CHD2")
gene_data = mutate(gene_data, genotype.timepoint = paste(genotype, timepoint, sep="."))
gene_data$genotype.diffState = factor(gene_data$genotype.timepoint)
#png(filename=paste("output/qc/TPM",current.gene,ExperimentName,Test,"png", sep="."), height=980, width=980, bg="white")
ggplot(data = gene_data, aes( x = genotype.timepoint, y = CHD2, colour = factor(genotype))) +
geom_boxplot(lwd = 1, outlier.shape = NA) +
scale_color_manual(values = pal4genotype) + #[factor(pdata.current$genotype)]) +
geom_jitter(color = "grey") +
xlab("Genotype at developmental timepoint") +
ylab(paste("TPM CHD2 (", current.gene, ")", sep ="")) +
labs(color="Genotype") +
theme_bw() +
theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust = 1))
#dev.off()
Note: Expression of both genes is variable in different samples and biological replicates. SCN2A expression is very low and moderately increases on average in WT and SCN2A cell lines. CHD2 expression is relatively high and dips at day 10 and 22 compared to fibroblast and day 28 iNeurons.
In all cases, each cell type will be tested separately except in the final cross comparisons where we will factor in differentiation over time and identify genes that change at different rates.
We’ll start by looking at the differentiation state of these cell lines relative to some typical marker genes. The first heatmap does not log2 transform the TPMs and also clusters the cell lines. In the second heatmap TPMs are log2 transformed and the ordering is the same as it appears in the pdata table. To avoid any errors during plotting a very small increment (0.0001) is added to all TPMs prior to log2 transformation.
expressionMatrix = gene.TPM[ match(diffMarkerGenes$ensembl_gene_id,row.names(gene.TPM)), ]
ensembl = useMart("ensembl",dataset="hsapiens_gene_ensembl")
Annotations = getBM(attributes = c('hgnc_symbol','ensembl_gene_id'),
filters = 'ensembl_gene_id',
values = diffMarkerGenes$ensembl_gene_id,
mart = ensembl)
Annotations = left_join(diffMarkerGenes, Annotations, by="ensembl_gene_id")
row.names(expressionMatrix) <- Annotations$hgnc_symbol
pheatmap(log2(expressionMatrix + 0.0001), color = colorRampPalette(rev(brewer.pal(n = 7, name ="RdBu"))) (100),
angle_col = 90, cluster_cols = TRUE, cluster_rows = TRUE,
main = "Expression (log2 TPM)")
pheatmap(log2(expressionMatrix + 0.0001), color = colorRampPalette(rev(brewer.pal(n = 7, name ="RdBu"))) (100),
angle_col = 90, cluster_cols = FALSE, cluster_rows = FALSE,
main = "Expression (log2 TPM)")
write.table(expressionMatrix, file = "output/misc/differentiation.markers.txt", quote=FALSE, row.names=TRUE, col.names=TRUE, sep="\t")
Note: Fibroblast lines cluster together while neurons do not necessarily cluster by differentiation state.
The following functions save us some typing later on and ensures that the tests we run are consistent between different differentiation time points.
# Define some functions so that code can be reused
# This function tests a subset of genotypes at a particular state of differentiation. It subsets pdata, fits the statistical generalised linear model to perform differential expression and return the results.
test_a_diff_state = function(diffState, countTable) {
pdata.current = pdata[pdata$diffState %in% diffState,]
samples = as.character(pdata.current$sampleCode)
counts.current = countTable[,samples]
d = DGEList(counts=counts.current, group=pdata.current$genotype)
f <- factor(pdata.current$genotype, levels=c("WT","SCN2A","CHD2")) # This sets the levels in the exact order we want
design = model.matrix(~f)
rownames(design) <- colnames(d)
keep = filterByExpr(d, design)
d = d[keep,]
d = calcNormFactors(d)
d = estimateDisp(d, design, robust = TRUE)
return(glmQLFit(d, design))
}
# This function generates a text table that summarises how many genes are differentially expressed at different levels of differentiation.
sig.gene.summary = function(x) {
sgs = cbind(summary(decideTests(x, p=0.005)),
summary(decideTests(x, p=0.01)),
summary(decideTests(x, p=0.05)),
summary(decideTests(x, p=0.2)),
summary(decideTests(x, adjust.method="none", p=0.01)))
colnames(sgs)<-c("q0.005", "q0.01", "q0.05", "q0.2", "p0.01")
return(sgs)
}
# ensembl = useMart("ensembl",dataset="hsapiens_gene_ensembl")
# This function adds gene annotations to a table of genes filterd by False Discovery Rate
attach_annotations_by_FDR = function(x, FDR) {
pValCut = sum(p.adjust(x$table$PValue,method="BH") < FDR)
tagsToAnnotate = topTags(x, n=pValCut)
betterAnno = getBM(attributes = c('hgnc_symbol','entrezgene_description', 'chromosome_name', 'start_position', 'end_position', 'gene_biotype','hgnc_id','ensembl_gene_id'),
filters = 'ensembl_gene_id',
values = gsub("\\..*","",row.names(tagsToAnnotate)),
mart = ensembl)
dexg = cbind(tagsToAnnotate, data.frame(ensembl_gene_id=gsub("\\..*","",row.names(tagsToAnnotate))))
dexg = left_join(dexg, betterAnno, by="ensembl_gene_id")
dexg = distinct(dexg, ensembl_gene_id, .keep_all = TRUE)
rownames(dexg)=rownames(tagsToAnnotate)
if (is(x, "DGELRT")){
tpm.dexg = current.TPM[rownames(dexg), rownames(x$samples)]
tpm.summary = t(aggregate(t(tpm.dexg), list(x$samples$group), mean))
colnames(tpm.summary) = tpm.summary[1,]
tpm.summary = apply(tpm.summary[-1,],2,as.numeric)
rownames(tpm.summary) = rownames(tpm.dexg)
tpm.dexg = log2(cbind(tpm.dexg + 0.0001, tpm.summary + 0.0001))
dexg = cbind(dexg, tpm.dexg)
}
return(dexg)
}
# As above but filtering by p value
attach_annotations_by_p = function(x, pVal) {
pValCut = sum(x$table$PValue < pVal)
tagsToAnnotate = topTags(x, n=pValCut)
betterAnno = getBM(attributes = c('hgnc_symbol','entrezgene_description', 'chromosome_name', 'start_position', 'end_position', 'gene_biotype','hgnc_id','ensembl_gene_id'),
filters = 'ensembl_gene_id',
values = gsub("\\..*","",row.names(tagsToAnnotate)),
mart = ensembl)
dexg = cbind(tagsToAnnotate, data.frame(ensembl_gene_id=gsub("\\..*","",row.names(tagsToAnnotate))))
dexg = left_join(dexg, betterAnno, by="ensembl_gene_id")
dexg = distinct(dexg, ensembl_gene_id, .keep_all = TRUE)
rownames(dexg)=rownames(tagsToAnnotate)
if (is(x, "DGELRT")){
tpm.dexg = current.TPM[rownames(dexg), rownames(x$samples)]
tpm.summary = t(aggregate(t(tpm.dexg), list(x$samples$group), mean))
colnames(tpm.summary) = tpm.summary[1,]
tpm.summary = apply(tpm.summary[-1,],2,as.numeric)
rownames(tpm.summary) = rownames(tpm.dexg)
tpm.dexg = log2(cbind(tpm.dexg + 0.0001, tpm.summary + 0.0001))
dexg = cbind(dexg, tpm.dexg)
}
return(dexg)
}
# This function tests the significance of gene list overlaps. To use it you need to know the length of the lists you are checking and the background list of genes expressed at the time point/s of interest.
hypergeometric_test_of_lists = function(total_genes, longest_list, shortest_list) {
n = length(unique(total_genes))
a = length(longest_list)
b = length(shortest_list)
t = length(intersect(longest_list, shortest_list))
PValue = sum(dhyper(t:b, a, n - a, b))
df = data.frame("total.genes" = n, "list.1" = a, "list.2" = b, "intersection" = t, "PValue" = PValue)
return(df)
}
In the following tables: logFC is the log2 transformed fold change between the test groups and the control group. logCPM is the average log2 transformed CPM value for all samples, values less than 0 usually indicate a gene with low expression however it is important to remember that this value is not normalised to gene length so a shorter transcript naturally has less reads mapped than a longer transcript with an equivalent level of expression. PValue is self explanatory, FDR is the adjusted p-value “False Discovery Rate”. In the summary of numbers of differentially expressed genes, FDR is represented by “q” while raw p-values are represented by “p”.
Test the differences between WT, SCN2A and CHD2 at the Fibroblast stage.
fit = test_a_diff_state(diffState = "fibroblast", countTable = counts.current)
qlf = glmQLFTest(fit, coef=2:3)
sig.gene.summary(qlf)
## q0.005 q0.01 q0.05 q0.2 p0.01
## NotSig 12676 12676 12675 12663 12395
## Sig 2 2 3 15 283
FB.genes.expressed = rownames(qlf$table)
attach_annotations_by_p(qlf, 0.01) %>%
kbl() %>%
kable_styling(bootstrap_options = c("striped", "hover", "condensed")) %>%
scroll_box(width = "100%", height = "300px")
| logFC.fSCN2A | logFC.fCHD2 | logCPM | F | PValue | FDR | ensembl_gene_id | hgnc_symbol | entrezgene_description | chromosome_name | start_position | end_position | gene_biotype | hgnc_id | CON_1_FB | CON_2_FB | CON_3_FB_A | CON_3_FB_B | CON_4_FB_A | CON_4_FB_B | SCN2A_1_FB | SCN2A_2_FB | SCN2A_3_FB | CHD2_1_FB | CHD2_2_FB | CHD2 | SCN2A | WT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000164530 | 9.2672318 | 7.6556384 | 7.790190 | 59.243990 | 0.0000000 | 0.0000207 | ENSG00000164530 | PI16 | peptidase inhibitor 16 | 6 | 36948263 | 36964837 | protein_coding | HGNC:21245 | 1.5685901 | -13.2877124 | 1.8602497 | -13.2877124 | -13.2877124 | 0.3875004 | 8.3132082 | 5.8975554 | 10.1103921 | 8.0880708 | 6.3647256 | 7.4697370 | 8.9494521 | 0.3978533 |
| ENSG00000083099 | 3.7351734 | 3.3493742 | 6.330989 | 51.016041 | 0.0000003 | 0.0019139 | ENSG00000083099 | LYRM2 | LYR motif containing 2 | 6 | 89568144 | 89638749 | protein_coding | HGNC:25229 | 3.1949867 | 2.6888965 | 1.0696987 | 1.5571777 | 3.2828746 | 0.7336207 | 5.0188961 | 5.9819918 | 6.5687089 | 5.6249322 | 6.2286551 | 5.9581457 | 5.9890822 | 2.4169937 |
| ENSG00000109063 | 3.6513523 | 2.3101942 | 5.155197 | 32.174940 | 0.0000041 | 0.0173265 | ENSG00000109063 | MYH3 | myosin heavy chain 3 | 17 | 10628526 | 10657309 | protein_coding | HGNC:7573 | 0.8480602 | 2.8387078 | 0.7874383 | 2.9153335 | 0.6148709 | 1.3582730 | 5.9686701 | 4.8309661 | 7.9754225 | 5.4247829 | 6.1832728 | 5.8533106 | 6.8361048 | 1.8952444 |
| ENSG00000254206 | 2.7146657 | 3.3129754 | 2.666425 | 17.990701 | 0.0000252 | 0.0531919 | ENSG00000254206 | NPIPB11 | nuclear pore complex interacting protein family member B11 | 16 | 29381310 | 29406711 | protein_coding | HGNC:37453 | -2.0763594 | -0.1423645 | 0.1772596 | 0.1291194 | -2.5292809 | -1.1611240 | 1.3445558 | 1.9404276 | 2.2891912 | 2.2318314 | 2.1845298 | 2.2083746 | 1.9088813 | -0.5893354 |
| ENSG00000135480 | 3.7820957 | 3.1556781 | 6.342843 | 24.082386 | 0.0000261 | 0.0531919 | ENSG00000135480 | KRT7 | keratin 7 | 12 | 52232520 | 52252186 | protein_coding | HGNC:6445 | 4.4070195 | 3.9599184 | 1.7580106 | 4.6663550 | 3.9946752 | 4.3414770 | 8.3168541 | 6.0636343 | 8.3904247 | 7.1284972 | 7.6894402 | 7.4360616 | 7.9095373 | 4.0841468 |
| ENSG00000007341 | 1.3843421 | 0.6387696 | 6.747843 | 23.728919 | 0.0000275 | 0.0531919 | ENSG00000007341 | ST7L | suppression of tumorigenicity 7 like | 1 | 112523514 | 112620825 | protein_coding | HGNC:18441 | 6.0808947 | 6.7549955 | 6.8066110 | 6.5654689 | 6.3754893 | 6.0333273 | 7.2524579 | 7.3427444 | 7.3154031 | 6.8994755 | 6.6818092 | 6.7947434 | 7.3040282 | 6.4672648 |
| ENSG00000064989 | 2.9881644 | 4.7626175 | 2.970199 | 17.894525 | 0.0000294 | 0.0531919 | ENSG00000064989 | CALCRL | calcitonin receptor like receptor | 2 | 187341964 | 187448460 | protein_coding | HGNC:16709 | -1.8718280 | -13.2877124 | -13.2877124 | -13.2877124 | -0.3365934 | -13.2877124 | 0.8038511 | 0.0141810 | 0.5672913 | 3.0638781 | 1.7013357 | 2.5378170 | 0.4982073 | -2.4933834 |
| ENSG00000106069 | 4.6661987 | 3.6804938 | 5.756248 | 20.065964 | 0.0000526 | 0.0832800 | ENSG00000106069 | CHN2 | chimerin 2 | 7 | 29146547 | 29514328 | protein_coding | HGNC:1944 | 2.7170637 | 1.5844613 | 0.6769552 | 1.4557546 | 1.3148763 | 2.3939955 | 3.5830036 | 4.5846315 | 7.8068619 | 6.2585512 | 5.1201766 | 5.7988474 | 6.4368596 | 1.8519968 |
| ENSG00000213024 | 2.0169871 | 1.3515877 | 7.160798 | 20.170730 | 0.0000664 | 0.0934970 | ENSG00000213024 | NUP62 | nucleoporin 62 | 19 | 49906825 | 49929764 | protein_coding | HGNC:8066 | 4.6465495 | 4.8917150 | 4.5804052 | 4.8299195 | 5.1333122 | 5.7102342 | 6.3392705 | 6.5076683 | 7.4661676 | 6.1983424 | 6.4140779 | 6.3102389 | 6.8612242 | 5.0190391 |
| ENSG00000241166 | 4.2399516 | -2.8046557 | 2.251460 | 16.086412 | 0.0001149 | 0.1456085 | ENSG00000241166 | HLA-L | HSCHR6_MHC_DBB_CTG1 | 1515484 | 1518204 | transcribed_unprocessed_pseudogene | HGNC:4970 | -13.2877124 | -0.0779194 | -13.2877124 | -13.2877124 | -13.2877124 | 0.5075136 | 2.2400539 | 1.3334982 | 0.9362554 | -13.2877124 | -13.2877124 | -13.2877124 | 1.6100436 | -1.3404279 | |
| ENSG00000111057 | 3.4596750 | 5.1954877 | 4.526283 | 14.602141 | 0.0001314 | 0.1476177 | ENSG00000111057 | KRT18 | keratin 18 | 12 | 52948871 | 52952906 | protein_coding | HGNC:6430 | -13.2877124 | 3.3980105 | -13.2877124 | -13.2877124 | -0.2186185 | -13.2877124 | 4.4183729 | 3.4877238 | 5.4113584 | 2.3557262 | 7.4736129 | 6.5145727 | 4.6469029 | 0.9261642 |
| ENSG00000244731 | -3.3054461 | 3.5419307 | 1.812557 | 14.672658 | 0.0001433 | 0.1476177 | ENSG00000244731 | C4A | complement C4A (Chido/Rodgers blood group) | 6 | 31982057 | 32002681 | protein_coding | HGNC:1323 | -13.2877124 | -1.7750904 | 1.0414357 | 4.2275700 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 1.3322960 | 4.9266911 | 4.0414449 | -13.2877124 | 1.8131503 |
| ENSG00000167393 | 3.2263936 | 1.4538977 | 3.684147 | 15.238303 | 0.0001514 | 0.1476177 | ENSG00000167393 | PPP2R3B | protein phosphatase 2 regulatory subunit B’’beta | X | 333933 | 386955 | protein_coding | HGNC:13417 | 2.1346238 | -13.2877124 | 2.7162532 | -0.9788159 | 2.9258810 | 3.8415847 | 3.8849634 | 5.9167611 | 3.3243953 | 3.5931000 | 4.1045265 | 3.8713577 | 4.8278659 | 2.4770675 |
| ENSG00000225972 | 5.6539493 | 0.1005963 | 6.369997 | 16.144869 | 0.0001743 | 0.1567709 | ENSG00000225972 | MTND1P23 | 1 | 629062 | 629433 | unprocessed_pseudogene | HGNC:42092 | 6.5580168 | 6.2927348 | 6.0878148 | 5.6260550 | 5.0816076 | 4.1057530 | 5.6982978 | 5.9012349 | 13.0267296 | 6.4465396 | 5.4231918 | 6.0237614 | 11.4609474 | 5.8291039 | |
| ENSG00000137312 | -1.6662508 | -9.0869733 | 4.858307 | 17.493794 | 0.0001855 | 0.1567709 | ENSG00000137312 | FLOT1 | flotillin 1 | 6 | 30727709 | 30742732 | protein_coding | HGNC:3757 | 5.3995838 | 5.0970812 | 5.1516244 | 5.4436381 | 5.1876357 | 5.1457875 | -13.2877124 | 4.5483309 | 3.1860157 | -13.2877124 | -13.2877124 | -13.2877124 | 3.4373756 | 5.2438343 |
| ENSG00000139174 | 1.6513321 | 2.9834015 | 2.849188 | 12.791121 | 0.0002741 | 0.2172247 | ENSG00000139174 | PRICKLE1 | prickle planar cell polarity protein 1 | 12 | 42456757 | 42590355 | protein_coding | HGNC:17019 | 4.3087540 | 1.5602518 | -0.5118408 | -0.7311991 | -13.2877124 | -0.5263855 | 1.2224652 | 0.9216816 | 1.2136422 | 1.7941771 | 3.6395692 | 2.9937729 | 1.1258706 | 2.0452902 |
| ENSG00000261862 | -3.3511838 | -2.7839963 | 3.072612 | 13.085217 | 0.0003168 | 0.2341874 | ENSG00000261862 | KRTAP1-5 | keratin associated protein 1-5 | HSCHR17_4_CTG4 | 175421 | 176597 | protein_coding | HGNC:16777 | 3.6243936 | 4.5895933 | 4.5600874 | 5.0328549 | 2.9230889 | 3.8063444 | -0.4183846 | 1.9719250 | -13.2877124 | 2.0101317 | -0.1324340 | 1.3046512 | 0.6388533 | 4.2518627 |
| ENSG00000174564 | 1.1893128 | 3.4789206 | 2.814612 | 11.973171 | 0.0003526 | 0.2341874 | ENSG00000174564 | IL20RB | interleukin 20 receptor subunit beta | 3 | 136946230 | 137011085 | protein_coding | HGNC:6004 | -13.2877124 | 1.4455731 | 1.4010395 | 1.2799936 | -13.2877124 | -13.2877124 | 2.3336934 | 1.9520267 | -13.2877124 | 4.3408204 | 4.0393879 | 4.1979625 | 1.5704984 | 0.3772737 |
| ENSG00000170421 | 3.3611238 | 4.9049124 | 6.696249 | 14.245325 | 0.0003891 | 0.2341874 | ENSG00000170421 | KRT8 | keratin 8 | 12 | 52897187 | 52949954 | protein_coding | HGNC:6446 | 3.5556359 | 7.4443834 | 3.8203234 | 2.5285513 | 4.4441016 | 5.3298751 | 9.3591420 | 5.8559226 | 9.7138019 | 7.3786731 | 11.6688783 | 10.7407942 | 9.0171633 | 5.4801413 |
| ENSG00000137507 | 2.4337810 | 2.7646691 | 4.404726 | 13.734843 | 0.0004051 | 0.2341874 | ENSG00000137507 | LRRC32 | leucine rich repeat containing 32 | 11 | 76657524 | 76670747 | protein_coding | HGNC:4161 | 1.2822162 | 2.4234300 | 2.0608948 | -1.1054950 | 0.7178306 | 1.6856114 | 2.0509965 | 2.7470243 | 4.2793657 | 2.8932826 | 4.4274869 | 3.8553828 | 3.3351316 | 1.5273406 |
| ENSG00000258388 | -7.4761764 | -5.4314807 | 7.081219 | 12.892434 | 0.0004053 | 0.2341874 | ENSG00000258388 | PPT2-EGFL8 | 6 | 32153845 | 32171978 | protein_coding | HGNC:48343 | 6.7863906 | 6.7813768 | -13.2877124 | -13.2877124 | 6.9716695 | 7.3040667 | 2.6620391 | -13.2877124 | -13.2877124 | 1.8729276 | -13.2877124 | 0.8729666 | 1.0771220 | 6.3921114 | |
| ENSG00000109771 | 1.8243018 | 1.4869601 | 7.597406 | 13.899344 | 0.0004324 | 0.2341874 | ENSG00000109771 | LRP2BP | LRP2 binding protein | 4 | 185363872 | 185395924 | protein_coding | HGNC:25434 | 5.5799485 | 4.6951447 | 5.0904707 | 4.3628712 | 5.0476673 | 4.8264153 | 5.9053402 | 6.0345403 | 7.4217346 | 6.1640556 | 6.7532774 | 6.4885407 | 6.6290994 | 4.9836189 |
| ENSG00000145244 | 1.7095681 | 1.4297110 | 4.903230 | 13.773065 | 0.0004610 | 0.2341874 | ENSG00000145244 | CORIN | corin, serine peptidase | 4 | 47593999 | 47838106 | protein_coding | HGNC:19012 | 3.8881454 | 2.5210495 | 3.5227454 | 0.7246948 | 1.9955742 | 0.9316793 | 3.2971899 | 4.3917603 | 4.3942518 | 4.2071219 | 3.8285281 | 4.0302084 | 4.1113112 | 2.7220159 |
| ENSG00000170370 | -1.1699209 | -1.4972110 | 5.497926 | 13.689262 | 0.0004675 | 0.2341874 | ENSG00000170370 | EMX2 | empty spiracles homeobox 2 | 10 | 117542445 | 117549546 | protein_coding | HGNC:3341 | 5.2627312 | 4.9650124 | 5.1279217 | 5.3250245 | 5.3836649 | 6.3508359 | 4.5756309 | 3.7016494 | 4.2210166 | 3.7853141 | 3.6584651 | 3.7232833 | 4.2095844 | 5.4813752 |
| ENSG00000183801 | 2.0739234 | 1.6949641 | 4.211358 | 13.505064 | 0.0004716 | 0.2341874 | ENSG00000183801 | OLFML1 | olfactomedin like 1 | 11 | 7485388 | 7511377 | protein_coding | HGNC:24473 | 3.5795251 | 1.2701946 | 1.6466862 | 1.1391001 | 2.0718910 | 3.0124274 | 3.7943270 | 4.1178676 | 4.2831178 | 3.9026505 | 3.4484134 | 3.6933358 | 4.0791041 | 2.4138629 |
| ENSG00000109775 | 2.6414430 | 2.7825633 | 7.380301 | 13.519539 | 0.0004947 | 0.2341874 | ENSG00000109775 | UFSP2 | UFM1 specific peptidase 2 | 4 | 185399537 | 185425979 | protein_coding | HGNC:25640 | 4.6329764 | 4.5927965 | 5.2386945 | 4.6289798 | 5.0782939 | 5.2711978 | 5.8384442 | 5.9567915 | 8.6188333 | 6.1323981 | 8.4653722 | 7.7265714 | 7.4163148 | 4.9373952 |
| ENSG00000197928 | -0.3598716 | 2.0870240 | 2.152507 | 11.041593 | 0.0004987 | 0.2341874 | ENSG00000197928 | ZNF677 | zinc finger protein 677 | 19 | 53235381 | 53254898 | protein_coding | HGNC:28730 | 2.5104873 | -0.3782730 | 2.2590477 | 3.4394793 | -0.5820843 | 2.2809501 | 1.6150240 | 1.2505372 | 0.1147348 | 4.3413044 | 3.1124528 | 3.8539428 | 1.1210691 | 2.2032604 |
| ENSG00000283787 | 4.0075943 | 2.2169104 | 2.788744 | 10.795454 | 0.0005675 | 0.2567930 | ENSG00000283787 | PRR33 | proline rich 33 | 11 | 1888078 | 1891895 | protein_coding | HGNC:35118 | 0.3881598 | -2.0168331 | -13.2877124 | -13.2877124 | -1.6358893 | -13.2877124 | 2.1565021 | 0.4908935 | 3.6205071 | 1.7504269 | -1.8832094 | 0.8622177 | 2.5979653 | -1.6758461 |
| ENSG00000237973 | 2.2795341 | 1.6837567 | 3.439719 | 12.125130 | 0.0005874 | 0.2567930 | ENSG00000237973 | MTCO1P12 | 1 | 631074 | 632616 | unprocessed_pseudogene | HGNC:52014 | 2.6700134 | 1.8455968 | 1.4958179 | -13.2877124 | 1.9637201 | 2.7614138 | 4.0161069 | 4.0888345 | 4.3518171 | 4.1265077 | 2.9817617 | 3.6648166 | 4.1595881 | 1.9671671 | |
| ENSG00000151388 | 1.6567856 | 2.1044675 | 4.231495 | 12.704780 | 0.0006365 | 0.2685592 | ENSG00000151388 | ADAMTS12 | ADAM metallopeptidase with thrombospondin type 1 motif 12 | 5 | 33523535 | 33892019 | protein_coding | HGNC:14605 | 1.1103706 | 0.9970047 | 2.2304465 | 2.0293356 | -0.2747073 | -0.9759215 | 1.7384168 | 1.9184832 | 3.0381445 | 1.3631318 | 3.3361137 | 2.6634860 | 2.3534438 | 1.2494308 |
| ENSG00000105989 | 3.1447524 | 1.4389217 | 2.688951 | 10.526580 | 0.0006567 | 0.2685592 | ENSG00000105989 | WNT2 | Wnt family member 2 | 7 | 117275451 | 117323152 | protein_coding | HGNC:12780 | -0.3018936 | 1.6235953 | -0.8840639 | -13.2877124 | -2.0040626 | 0.6793130 | 2.9762707 | 4.2571479 | 2.6529804 | -13.2877124 | 1.7827214 | 0.7827633 | 3.4716629 | 0.0670012 |
| ENSG00000095110 | 2.5377699 | 2.0815106 | 2.738244 | 10.557028 | 0.0007171 | 0.2686666 | ENSG00000095110 | NXPE1 | neurexophilin and PC-esterase domain family member 1 | 11 | 114518934 | 114559881 | protein_coding | HGNC:28527 | 0.3952350 | 0.7951926 | -0.1847082 | -13.2877124 | 0.6930850 | 1.2830725 | 2.8306529 | 3.4739291 | 1.3969754 | 2.0992407 | 2.7165515 | 2.4406647 | 2.7976041 | 0.4115521 |
| ENSG00000131459 | 2.3697160 | 2.4948866 | 2.833943 | 10.576042 | 0.0007326 | 0.2686666 | ENSG00000131459 | GFPT2 | glutamine-fructose-6-phosphate transaminase 2 | 5 | 180300698 | 180353336 | protein_coding | HGNC:4242 | -0.2070947 | 0.9315885 | -1.9584542 | 0.4072603 | -0.4944322 | -13.2877124 | 2.9796356 | 3.0085036 | 3.8373350 | 3.6646082 | 2.3454143 | 3.1508168 | 3.3329052 | -0.2438122 |
| ENSG00000158747 | -1.5538785 | -1.2830623 | 5.731055 | 12.372970 | 0.0007458 | 0.2686666 | ENSG00000158747 | NBL1 | NBL1, DAN family BMP antagonist | 1 | 19596979 | 19658456 | protein_coding | HGNC:7650 | 5.3242079 | 5.0450480 | 6.1115675 | 6.1714591 | 5.9813091 | 6.3262545 | 4.5635439 | 4.0779874 | 3.1691770 | 4.4739164 | 4.4115813 | 4.4430854 | 4.0452787 | 5.8977124 |
| ENSG00000233151 | 6.3188897 | 6.1884972 | 6.565700 | 10.887403 | 0.0007598 | 0.2686666 | ENSG00000233151 | CYP21A2 | cytochrome P450 family 21 subfamily A member 2 | HSCHR6_MHC_COX_CTG1 | 3476620 | 3479992 | protein_coding | HGNC:2600 | -0.0663579 | -13.2877124 | 1.7676828 | 2.7230727 | 0.8047318 | 0.4950146 | 0.9898794 | -13.2877124 | 8.8133576 | 4.2089864 | 8.2448121 | 7.3301920 | 7.2347504 | 1.2346184 |
| ENSG00000168542 | 1.5238446 | 0.9181041 | 10.663738 | 12.287733 | 0.0007660 | 0.2686666 | ENSG00000168542 | COL3A1 | collagen type III alpha 1 chain | 2 | 188974373 | 189012746 | protein_coding | HGNC:2201 | 7.4318224 | 8.7197772 | 8.0236926 | 8.6326064 | 7.6478074 | 8.3067740 | 8.9566955 | 9.0236065 | 10.2008988 | 8.7687707 | 9.2812328 | 9.0476371 | 9.5145870 | 8.2034410 |
| ENSG00000006042 | -1.5534270 | -0.6431837 | 4.594949 | 12.285111 | 0.0007841 | 0.2686666 | ENSG00000006042 | TMEM98 | transmembrane protein 98 | 17 | 32927910 | 32945106 | protein_coding | HGNC:24529 | 4.3519042 | 4.1391589 | 4.4132342 | 4.1934590 | 4.4607339 | 5.6121446 | 3.4124339 | 2.8014869 | 3.3460825 | 2.7801062 | 3.2705472 | 3.0460677 | 3.2114200 | 4.6300914 |
| ENSG00000105974 | -1.5785927 | -0.9154915 | 7.806310 | 12.071749 | 0.0008302 | 0.2769953 | ENSG00000105974 | CAV1 | caveolin 1 | 7 | 116524994 | 116561179 | protein_coding | HGNC:1527 | 7.6338804 | 7.9316748 | 8.8713139 | 9.2146877 | 8.1028748 | 8.0680446 | 7.0501544 | 6.7896952 | 5.4626861 | 7.5499288 | 7.0762120 | 7.3324272 | 6.5812752 | 8.4154073 |
| ENSG00000144355 | -5.5321828 | -2.5593125 | 4.837066 | 10.784164 | 0.0008753 | 0.2845505 | ENSG00000144355 | DLX1 | distal-less homeobox 1 | 2 | 172084740 | 172089677 | protein_coding | HGNC:2914 | 3.7035981 | 5.1025980 | 6.8673383 | 7.4976258 | 2.0782416 | 1.7683533 | -0.2600085 | 0.2025870 | -13.2877124 | 4.0641814 | 2.9084321 | 3.5990727 | -0.5951383 | 5.8764889 |
| ENSG00000260735 | 1.1424049 | 0.6689868 | 6.508036 | 11.731994 | 0.0009457 | 0.2997499 | ENSG00000260735 | uncharacterized LOC100505915 | 16 | 15103135 | 15103355 | transcribed_processed_pseudogene | 5.3744619 | 5.7726942 | 4.9329342 | 4.7857540 | 5.0200759 | 4.8592029 | 6.3109521 | 6.1399053 | 6.1164620 | 5.7240661 | 5.9487093 | 5.8407558 | 6.1917444 | 5.1683035 | ||
| ENSG00000111907 | 2.0446962 | 2.1428290 | 4.357473 | 11.504141 | 0.0009903 | 0.3020452 | ENSG00000111907 | TPD52L1 | TPD52 like 1 | 6 | 125119049 | 125264407 | protein_coding | HGNC:12006 | 1.9117027 | 3.6835880 | 3.2608632 | 3.6567267 | 3.6184814 | 5.1763573 | 4.3243903 | 5.6543636 | 5.5090133 | 5.0900317 | 6.2215990 | 5.7640250 | 5.2722483 | 3.8621548 |
| ENSG00000278312 | 9.5608434 | 9.1764310 | 4.771702 | 15.605808 | 0.0010223 | 0.3020452 | ENSG00000278312 | LENG9 | leukocyte receptor cluster member 9 | HSCHR19LRC_COX1_CTG3_1 | 368305 | 370225 | protein_coding | HGNC:16306 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 6.2152859 | 5.9861432 | 5.2160039 | 5.3057507 | 5.2615752 | 5.5202978 | -13.2877124 |
| ENSG00000198846 | -3.5931351 | -1.7499020 | 3.335076 | 10.549668 | 0.0010345 | 0.3020452 | ENSG00000198846 | TOX | thymocyte selection associated high mobility group box | 8 | 58805412 | 59119147 | protein_coding | HGNC:18988 | 0.3311124 | 2.7501423 | 3.0707197 | 3.5282032 | 1.5029604 | 0.1495846 | -2.4843965 | -0.4134937 | -2.3989996 | 1.2084542 | -0.6186657 | 0.5666554 | -1.4226260 | 2.4090870 |
| ENSG00000188783 | 1.8974273 | 0.2266760 | 4.392720 | 11.490059 | 0.0010483 | 0.3020452 | ENSG00000188783 | PRELP | proline and arginine rich end leucine rich repeat protein | 1 | 203475806 | 203491352 | protein_coding | HGNC:9357 | 1.6073246 | 2.5241216 | 1.4398226 | 0.4104822 | -0.9024863 | 0.9402931 | 3.3240039 | 3.5795205 | 2.6241166 | 1.6779637 | 1.6574132 | 1.6677250 | 3.2292949 | 1.3500236 |
| ENSG00000105971 | -1.3380731 | -0.4558928 | 5.558588 | 11.380772 | 0.0010856 | 0.3058447 | ENSG00000105971 | CAV2 | caveolin 2 | 7 | 116287380 | 116508541 | protein_coding | HGNC:1528 | 5.0413961 | 4.4792503 | 5.4526755 | 5.5437594 | 5.8958272 | 5.4302352 | 3.5735000 | 3.8398038 | 3.6135955 | 4.2147561 | 4.7407631 | 4.5016009 | 3.6804751 | 5.3712041 |
| ENSG00000148824 | -1.0527820 | 0.8278007 | 6.168384 | 11.004250 | 0.0012549 | 0.3434807 | ENSG00000148824 | MTG1 | mitochondrial ribosome associated GTPase 1 | 10 | 133394094 | 133422520 | protein_coding | HGNC:32159 | 4.4527644 | 4.8395342 | 5.2199675 | 5.3781255 | 5.3354561 | 5.0858668 | 4.3179588 | 3.5257346 | 3.1931740 | 6.2490492 | 5.4134832 | 5.8909311 | 3.7587509 | 5.0855441 |
| ENSG00000103888 | -1.1085896 | 0.8291818 | 7.999369 | 10.858855 | 0.0013265 | 0.3434807 | ENSG00000103888 | CEMIP | cell migration inducing hyaluronidase 1 | 15 | 80779343 | 80951776 | protein_coding | HGNC:29213 | 5.9623688 | 6.3215520 | 5.6873390 | 5.8582669 | 5.1780956 | 5.7385080 | 3.9422993 | 5.8816682 | 5.1809298 | 6.8576477 | 6.2283770 | 6.5770531 | 5.2043559 | 5.8306425 |
| ENSG00000148180 | -1.1363838 | -0.4491221 | 7.387349 | 10.757326 | 0.0013816 | 0.3434807 | ENSG00000148180 | GSN | gelsolin | 9 | 121207794 | 121332843 | protein_coding | HGNC:4620 | 6.9772067 | 6.7386078 | 6.9365661 | 7.6434110 | 6.8176347 | 7.8083136 | 5.7671008 | 6.2835602 | 5.5747461 | 6.6384431 | 6.7432739 | 6.6918104 | 5.9070577 | 7.2162022 |
| ENSG00000196569 | -0.2901248 | 1.2513298 | 6.006351 | 10.680730 | 0.0014293 | 0.3434807 | ENSG00000196569 | LAMA2 | laminin subunit alpha 2 | 6 | 128883138 | 129516566 | protein_coding | HGNC:6482 | 2.7090433 | 4.4897462 | 2.9872528 | 3.3073513 | 4.4879952 | 2.4283075 | 2.0458085 | 2.4543288 | 2.8502025 | 3.3657356 | 4.6733816 | 4.1629035 | 2.4871985 | 3.6372561 |
| ENSG00000181744 | -2.2714461 | -2.4062926 | 3.352766 | 10.283800 | 0.0015016 | 0.3434807 | ENSG00000181744 | DIPK2A | divergent protein kinase domain 2A | 3 | 143971823 | 144048719 | protein_coding | HGNC:28490 | 1.4498973 | 1.8117513 | 2.4798884 | 3.0370130 | 1.9445721 | 3.2204583 | -1.5836012 | 0.9470549 | -1.0514679 | 2.7289351 | -1.3024148 | 1.8145726 | -0.1286515 | 2.4681086 |
| ENSG00000226065 | 8.5078315 | 0.0000000 | 3.295672 | 15.495248 | 0.0015083 | 0.3434807 | ENSG00000226065 | ZBTB45P2 | 2 | 110383112 | 110384642 | processed_pseudogene | HGNC:49228 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 2.8361803 | 2.7622806 | 6.1702093 | -13.2877124 | -13.2877124 | -13.2877124 | 4.8402976 | -13.2877124 | |
| ENSG00000112902 | -1.6653262 | -0.2606195 | 6.334418 | 10.506988 | 0.0015311 | 0.3434807 | ENSG00000112902 | SEMA5A | semaphorin 5A | 5 | 9035033 | 9546075 | protein_coding | HGNC:10736 | 3.4433596 | 3.6562657 | 4.1885450 | 4.7174597 | 4.2890476 | 3.1404417 | 2.0433001 | 2.2571956 | 1.8651979 | 4.5033130 | 3.3108363 | 4.0269262 | 2.0641544 | 4.0059354 |
| ENSG00000148677 | 2.8197176 | 3.9848936 | 2.735086 | 8.837992 | 0.0015868 | 0.3434807 | ENSG00000148677 | ANKRD1 | ankyrin repeat domain 1 | 10 | 90912096 | 90921087 | protein_coding | HGNC:15819 | -1.0978075 | -13.2877124 | -13.2877124 | -13.2877124 | 1.5217825 | 0.3057745 | 2.3694352 | 1.9093038 | 2.4552099 | 1.0988716 | 4.4662726 | 3.5997010 | 2.2637951 | -0.3911705 |
| ENSG00000075643 | 2.8386764 | 2.0649419 | 3.382904 | 9.390120 | 0.0015933 | 0.3434807 | ENSG00000075643 | MOCOS | molybdenum cofactor sulfurase | 18 | 36187497 | 36272157 | protein_coding | HGNC:18234 | 0.5699829 | -1.9721269 | -2.0565032 | -0.6941789 | -13.2877124 | 0.5138717 | 1.6870997 | 0.2735994 | 2.9192672 | 1.5735563 | 1.0674997 | 1.3426040 | 1.9992213 | -0.5756803 |
| ENSG00000102802 | 4.1509972 | 2.7024915 | 3.142821 | 8.799562 | 0.0015972 | 0.3434807 | ENSG00000102802 | MEDAG | mesenteric estrogen dependent adipogenesis | 13 | 30906271 | 30925572 | protein_coding | HGNC:25926 | 0.6577141 | -13.2877124 | -13.2877124 | -0.1399224 | -13.2877124 | 1.6463046 | 2.8846302 | -13.2877124 | 4.7776542 | 1.7032615 | 2.6147249 | 2.2298074 | 3.5366631 | -0.0954820 |
| ENSG00000182240 | 1.1043848 | 1.3453198 | 4.548622 | 10.373401 | 0.0016400 | 0.3434807 | ENSG00000182240 | BACE2 | beta-secretase 2 | 21 | 41167801 | 41282530 | protein_coding | HGNC:934 | 3.2034854 | 3.4807324 | 2.3041115 | 3.5134911 | 4.1041556 | 3.1040424 | 3.6559463 | 3.4571002 | 4.1989644 | 4.1748481 | 3.9855702 | 4.0833112 | 3.8057537 | 3.3815173 |
| ENSG00000143315 | 1.6429707 | 1.3258019 | 5.009068 | 10.342236 | 0.0016615 | 0.3434807 | ENSG00000143315 | PIGM | phosphatidylinositol glycan anchor biosynthesis class M | 1 | 160024953 | 160031990 | protein_coding | HGNC:18858 | 1.4387245 | 2.2243602 | 2.1050518 | 2.4317280 | 0.6719038 | -0.0964804 | 2.4658525 | 3.3109986 | 3.6886711 | 3.2528071 | 2.7980997 | 3.0432941 | 3.2399809 | 1.7085448 |
| ENSG00000164125 | 1.8856113 | 2.5727082 | 4.538921 | 10.244245 | 0.0016679 | 0.3434807 | ENSG00000164125 | GASK1B | golgi associated kinase 1B | 4 | 158124474 | 158173318 | protein_coding | HGNC:25312 | 3.4712746 | 4.0420638 | 0.6178439 | 3.1169291 | 2.1501496 | -0.0178070 | 1.9483474 | 3.7735701 | 5.7978903 | 4.6666281 | 5.5761416 | 5.1919011 | 4.6082002 | 2.8480131 |
| ENSG00000143369 | -0.6745513 | -1.1691978 | 6.443398 | 10.227770 | 0.0017156 | 0.3434807 | ENSG00000143369 | ECM1 | extracellular matrix protein 1 | 1 | 150508062 | 150513789 | protein_coding | HGNC:3153 | 6.0675234 | 6.3192123 | 6.3876635 | 6.4220226 | 6.7211071 | 6.4197257 | 5.9323274 | 5.4272164 | 5.1763239 | 4.9542330 | 5.4129737 | 5.2017605 | 5.5469528 | 6.4023153 |
| ENSG00000152495 | 2.2002841 | 1.4749249 | 4.540210 | 10.201133 | 0.0017269 | 0.3434807 | ENSG00000152495 | CAMK4 | calcium/calmodulin dependent protein kinase IV | 5 | 111223653 | 111494886 | protein_coding | HGNC:1464 | 3.0223611 | 0.5696447 | 0.5461037 | 0.7817500 | -2.5730290 | -13.2877124 | 2.2205714 | 1.1802790 | 2.7783160 | 1.4995505 | 1.7025990 | 1.6046440 | 2.2003261 | 1.1106552 |
| ENSG00000181333 | -7.0850333 | -1.4223913 | 2.926464 | 11.063842 | 0.0017270 | 0.3434807 | ENSG00000181333 | HEPHL1 | hephaestin like 1 | 11 | 94021354 | 94114208 | protein_coding | HGNC:30477 | 2.1381431 | 1.2475982 | 2.4487366 | 1.3339149 | -0.0498213 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 0.0161368 | 0.1883313 | 0.1048009 | -13.2877124 | 1.3898239 |
| ENSG00000142149 | -3.2500569 | -0.9228285 | 3.342748 | 9.565748 | 0.0017286 | 0.3434807 | ENSG00000142149 | HUNK | hormonally up-regulated Neu-associated kinase | 21 | 31873020 | 32044633 | protein_coding | HGNC:13326 | 2.1065115 | -0.1284339 | -0.0610654 | 4.0908117 | 1.6054128 | 1.5098073 | 2.6185786 | -3.3725500 | -3.3592236 | -0.1670177 | 0.7416025 | 0.3576725 | 1.0784841 | 2.2784767 |
| ENSG00000270554 | 1.6150678 | 1.2749664 | 3.770701 | 10.062725 | 0.0017365 | 0.3434807 | ENSG00000270554 | EIF3EP4 | 3 | 182843521 | 182844619 | processed_pseudogene | HGNC:37921 | 2.9470098 | 3.6686841 | 2.9535133 | 3.7501095 | 3.7052760 | 3.6733895 | 5.2344128 | 4.1009549 | 5.1548118 | 5.0652920 | 4.1673375 | 4.6850779 | 4.9137712 | 3.4904058 | |
| ENSG00000162545 | -2.5091938 | -1.4013843 | 4.505200 | 10.211287 | 0.0017482 | 0.3434807 | ENSG00000162545 | CAMK2N1 | calcium/calmodulin dependent protein kinase II inhibitor 1 | 1 | 20482391 | 20486210 | protein_coding | HGNC:24190 | 3.8049092 | 3.5510649 | 5.2475352 | 5.5650234 | 4.3016841 | 2.3605955 | 1.8620419 | 2.1737661 | 1.0732773 | 3.3180707 | 2.5920745 | 3.0002660 | 1.7727898 | 4.5012863 |
| ENSG00000235253 | 1.1142033 | 0.9294894 | 4.989509 | 10.184312 | 0.0017702 | 0.3434807 | ENSG00000235253 | EEF1A1P50 | 5 | 132942932 | 132945050 | processed_pseudogene | HGNC:56207 | 4.6799850 | 5.2113143 | 5.1326866 | 4.1581075 | 4.7155894 | 5.0842918 | 5.9970891 | 5.9461628 | 5.6462955 | 5.5271213 | 6.0522798 | 5.8134652 | 5.8712796 | 4.8729711 | |
| ENSG00000230383 | 2.1956054 | 0.8236000 | 2.318578 | 8.670107 | 0.0018105 | 0.3434807 | ENSG00000230383 | RPL6P19 | 7 | 137721985 | 137722846 | processed_pseudogene | HGNC:36754 | 1.4336565 | 1.9315931 | 1.8570187 | 3.2474430 | 0.7332103 | 1.8663169 | 3.8954503 | 3.0687460 | 4.6145888 | 2.3003988 | 3.0792926 | 2.7417839 | 3.9930676 | 2.0556469 | |
| ENSG00000225987 | 0.7885894 | 2.8181067 | 2.587593 | 8.732255 | 0.0018672 | 0.3434807 | ENSG00000225987 | PBX2 | PBX homeobox 2 | HSCHR6_MHC_APD_CTG1 | 3517335 | 3522785 | protein_coding | HGNC:8633 | 0.8835137 | -13.2877124 | 3.3954851 | 2.5239887 | -0.5872293 | 0.7033532 | 1.8666145 | 2.2214775 | 3.2426202 | 4.9726695 | 3.9372839 | 4.5459330 | 2.5668624 | 1.7664998 |
| ENSG00000226618 | 4.5702972 | -4.3744523 | 3.764198 | 8.759847 | 0.0018957 | 0.3434807 | ENSG00000226618 | PRRC2A | proline rich coiled-coil 2A | HSCHR6_MHC_MANN_CTG1 | 2925761 | 2942812 | protein_coding | HGNC:13918 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 0.9364853 | -13.2877124 | 4.5011603 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 2.9162104 | -1.6481003 |
| ENSG00000176857 | 1.0429933 | 1.3569858 | 4.851922 | 10.011359 | 0.0019053 | 0.3434807 | ENSG00000176857 | GJA1P1 | 5 | 109051315 | 109052457 | processed_pseudogene | HGNC:4275 | 4.7302310 | 4.8741871 | 5.0661363 | 5.2589574 | 3.9783605 | 4.2766440 | 5.2802763 | 5.3195163 | 6.1821968 | 6.0098546 | 6.1894272 | 6.1024331 | 5.6573533 | 4.7620527 | |
| ENSG00000111669 | -0.7661297 | -0.7346077 | 6.870330 | 9.964837 | 0.0019133 | 0.3434807 | ENSG00000111669 | TPI1 | triosephosphate isomerase 1 | 12 | 6867119 | 6870948 | protein_coding | HGNC:12009 | 7.3933289 | 7.2269048 | 7.4835902 | 7.9954247 | 7.5012874 | 7.4982438 | 6.6729676 | 6.5877332 | 6.5813319 | 6.7016991 | 6.7358727 | 6.7188871 | 6.6146196 | 7.5366494 |
| ENSG00000273993 | -1.0241372 | 0.0000669 | 5.497535 | 9.962121 | 0.0019236 | 0.3434807 | ENSG00000273993 | PTPRK | protein tyrosine phosphatase receptor type K | HSCHR6_1_CTG8 | 313977 | 870008 | protein_coding | HGNC:9674 | 3.1478549 | 3.9477183 | 5.4736642 | 4.1079463 | 5.1784318 | 4.3075709 | 3.7747625 | 3.0450973 | 3.0004466 | 4.5656233 | 4.0184311 | 4.3178159 | 3.3192212 | 4.5646636 |
| ENSG00000087302 | 1.3327870 | 0.8454574 | 9.330948 | 9.893136 | 0.0019710 | 0.3457575 | ENSG00000087302 | RTRAF | RNA transcription, translation and transport factor | 14 | 51989514 | 52010694 | protein_coding | HGNC:23169 | 6.6834916 | 6.7949252 | 7.3100100 | 7.1441817 | 7.7099776 | 7.2737114 | 7.4446714 | 8.5053565 | 8.2180861 | 6.7332951 | 8.2201387 | 7.6603390 | 8.1213097 | 7.1932494 |
| ENSG00000176532 | 3.5167117 | 2.7660340 | 3.914092 | 8.935373 | 0.0020140 | 0.3457575 | ENSG00000176532 | PRR15 | proline rich 15 | 7 | 29563835 | 29567293 | protein_coding | HGNC:22310 | 2.9090494 | 1.1241580 | 0.0433809 | -13.2877124 | 0.5068172 | 0.6126111 | 3.4343995 | 1.6298448 | 6.1161563 | 5.4246668 | 2.4288033 | 4.5950520 | 4.7947895 | 1.1881407 |
| ENSG00000128266 | -3.9827800 | -3.4325573 | 3.117383 | 8.708387 | 0.0020181 | 0.3457575 | ENSG00000128266 | GNAZ | G protein subunit alpha z | 22 | 23070519 | 23125032 | protein_coding | HGNC:4395 | -1.8610335 | 1.6398744 | 3.7529539 | 3.4249202 | 2.4360336 | 2.3493356 | -13.2877124 | -0.0218512 | -13.2877124 | 0.0153677 | -13.2877124 | -0.9844896 | -1.6065210 | 2.6675509 |
| ENSG00000196782 | -1.3891209 | -2.3206365 | 3.824126 | 9.755028 | 0.0021028 | 0.3497212 | ENSG00000196782 | MAML3 | mastermind like transcriptional coactivator 3 | 4 | 139716753 | 140154184 | protein_coding | HGNC:16272 | 4.2586035 | 3.1958447 | 3.3913006 | 2.5443926 | 2.3670017 | 1.8200605 | -0.2732002 | 0.9685369 | 0.3970319 | -0.3569510 | -0.4074746 | -0.3819916 | 0.4510600 | 3.1516463 |
| ENSG00000204351 | -6.8241320 | -1.3828876 | 2.785575 | 10.426217 | 0.0021196 | 0.3497212 | ENSG00000204351 | SKIC2 | SKI2 subunit of superkiller complex | 6 | 31959116 | 31969818 | protein_coding | HGNC:10898 | 0.7278447 | 0.6901033 | 1.4827007 | 3.8512223 | 2.9810487 | 1.8104707 | -13.2877124 | -13.2877124 | -13.2877124 | -0.2796182 | 1.3460446 | 0.7510137 | -13.2877124 | 2.4105072 |
| ENSG00000171385 | 2.3390865 | 2.5530601 | 3.934618 | 9.332379 | 0.0021240 | 0.3497212 | ENSG00000171385 | KCND3 | potassium voltage-gated channel subfamily D member 3 | 1 | 111770662 | 111989668 | protein_coding | HGNC:6239 | -0.8368723 | -0.6569470 | -1.0045111 | 0.6189772 | 1.9249227 | -0.7555294 | 0.4178012 | 3.1758968 | 2.7028698 | 0.8979777 | 3.9900783 | 3.1500555 | 2.4926377 | 0.3444104 |
| ENSG00000183153 | 0.6334952 | 1.0580381 | 6.397517 | 9.650359 | 0.0021892 | 0.3530419 | ENSG00000183153 | GJD3 | gap junction protein delta 3 | 17 | 40360652 | 40364737 | protein_coding | HGNC:19147 | 6.9784072 | 7.0465706 | 6.9980905 | 6.9982432 | 7.1373893 | 7.3978994 | 7.1288165 | 7.4642610 | 7.9752421 | 8.0270836 | 8.2104334 | 8.1216692 | 7.5652651 | 7.1005099 |
| ENSG00000230399 | 2.1256440 | 2.6571887 | 2.276203 | 8.225023 | 0.0021999 | 0.3530419 | ENSG00000230399 | RBBP8P1 | X | 118632375 | 118634616 | protein_coding | HGNC:39583 | 0.0208556 | 0.5214930 | -1.1446704 | 1.2261984 | -13.2877124 | 0.4246502 | 1.9574986 | 2.4427203 | 1.4583789 | 3.2172755 | 1.6559553 | 2.6382599 | 2.0082158 | 0.1340316 | |
| ENSG00000169203 | 1.7991046 | 1.2700007 | 3.825154 | 9.462875 | 0.0022413 | 0.3551926 | ENSG00000169203 | NPIPB12 | nuclear pore complex interacting protein family member B12 | 16 | 29483534 | 29506408 | protein_coding | HGNC:37491 | 2.7832523 | 3.3268760 | 1.4323683 | 3.7646143 | 2.8462251 | 1.5140849 | 5.1168490 | 4.2887294 | 4.5920167 | 3.3886389 | 5.3555035 | 4.6841199 | 4.7071254 | 2.8498638 |
| ENSG00000183214 | 3.8462418 | 3.9937323 | 3.717367 | 8.243845 | 0.0022761 | 0.3562542 | ENSG00000183214 | MICA | MHC class I polypeptide-related sequence A | HSCHR6_MHC_QBL_CTG1 | 2655411 | 2671966 | protein_coding | HGNC:7090 | 1.1626116 | -13.2877124 | 1.0436651 | 1.2301655 | -13.2877124 | -13.2877124 | 4.1875986 | -13.2877124 | 4.8628160 | 5.2284999 | -13.2877124 | 4.2285040 | 3.9793952 | 0.1475933 |
| ENSG00000178404 | -0.3213847 | 2.9866594 | 1.625742 | 7.871150 | 0.0023233 | 0.3576345 | ENSG00000178404 | CEP295NL | CEP295 N-terminal like | 17 | 78890579 | 78903217 | protein_coding | HGNC:44659 | -13.2877124 | -0.0834408 | 0.4200026 | 0.2060230 | -13.2877124 | -13.2877124 | -0.4215192 | -13.2877124 | -1.1463237 | 2.3348125 | 2.3206842 | 2.3277657 | -1.3237171 | -0.8044264 |
| ENSG00000186918 | -1.5919006 | -1.7991359 | 4.510161 | 9.533873 | 0.0023414 | 0.3576345 | ENSG00000186918 | ZNF395 | zinc finger protein 395 | 8 | 28345590 | 28402701 | protein_coding | HGNC:18737 | 4.9828514 | 3.6470477 | 4.7710204 | 5.1661523 | 2.2525041 | 2.5994982 | 2.8576144 | 2.2572852 | 1.2264086 | 3.0572900 | 2.5834791 | 2.8397488 | 2.2599157 | 4.2999408 |
| ENSG00000203811 | 1.0630182 | 0.9857453 | 5.938284 | 9.394286 | 0.0024506 | 0.3698656 | ENSG00000203811 | H3C14 | H3 clustered histone 14 | 1 | 149840687 | 149841208 | protein_coding | HGNC:20503 | 5.5082000 | 5.7492821 | 4.9697999 | 5.1242265 | 4.8244717 | 5.5152342 | 6.3106428 | 6.2305063 | 6.1631156 | 6.7222501 | 5.6122314 | 6.2714640 | 6.2360167 | 5.3194460 |
| ENSG00000198553 | 1.6938401 | 1.1231885 | 5.122035 | 9.347118 | 0.0025251 | 0.3740648 | ENSG00000198553 | KCNRG | potassium channel regulator | 13 | 50015254 | 50020922 | protein_coding | HGNC:18893 | 5.2578954 | 4.6969700 | 4.8193643 | 4.5324686 | 3.1168456 | 2.1220157 | 6.4506033 | 5.4794390 | 6.1290362 | 5.7730714 | 4.9500407 | 5.4194674 | 6.0737174 | 4.4218447 |
| ENSG00000134901 | 1.8429187 | 1.3460793 | 2.667741 | 8.370198 | 0.0025844 | 0.3740648 | ENSG00000134901 | POGLUT2 | protein O-glucosyltransferase 2 | 13 | 102784281 | 102799040 | protein_coding | HGNC:19350 | 1.4452590 | 1.0981177 | 0.6943641 | 0.0643241 | 0.7431875 | 0.2641196 | 4.2506809 | 2.1573096 | 3.0351185 | 2.6422730 | 1.7178543 | 2.2528719 | 3.4011866 | 0.7938834 |
| ENSG00000114270 | -1.9038619 | -0.7568064 | 5.355342 | 9.278434 | 0.0025855 | 0.3740648 | ENSG00000114270 | COL7A1 | collagen type VII alpha 1 chain | 3 | 48564073 | 48595329 | protein_coding | HGNC:2214 | 2.3104672 | 3.2923502 | 3.8488815 | 3.8262343 | 2.8003222 | 2.5502163 | 2.7305700 | 0.8042048 | -1.0568123 | 2.5348562 | 2.4348633 | 2.4857259 | 1.5630043 | 3.2268664 |
| ENSG00000172349 | -0.2708952 | 0.8275232 | 7.777414 | 9.196165 | 0.0026612 | 0.3740648 | ENSG00000172349 | IL16 | interleukin 16 | 15 | 81159575 | 81314058 | protein_coding | HGNC:5980 | 4.9293966 | 4.5153993 | 4.9590065 | 4.8722044 | 5.0005743 | 4.9613886 | 4.1964682 | 4.7831125 | 4.4631532 | 5.9895126 | 5.5896772 | 5.8034025 | 4.5008976 | 4.8818315 |
| ENSG00000138944 | -2.6675472 | -3.7330705 | 3.108367 | 8.502722 | 0.0026689 | 0.3740648 | ENSG00000138944 | SHISAL1 | shisa like 1 | 22 | 44243665 | 44312951 | protein_coding | HGNC:29335 | 1.5992202 | -2.1271602 | 1.6946248 | 2.6736564 | 1.4225737 | -1.6409377 | -0.9531402 | -2.2027712 | -1.6046125 | -1.5810696 | -13.2877124 | -2.5806380 | -1.4974303 | 1.4039360 |
| ENSG00000027075 | 3.6061638 | 3.6567498 | 2.562007 | 8.071848 | 0.0026980 | 0.3740648 | ENSG00000027075 | PRKCH | protein kinase C eta | 14 | 61187559 | 61550980 | protein_coding | HGNC:9403 | -13.2877124 | -1.7160450 | -13.2877124 | -13.2877124 | 2.1125290 | 0.7708595 | 3.4201706 | 3.8593743 | 6.5515330 | 4.1069991 | 5.4343826 | 4.9182528 | 5.3100953 | 0.0784855 |
| ENSG00000196139 | -1.2286393 | 2.4942865 | 2.252457 | 7.684288 | 0.0027061 | 0.3740648 | ENSG00000196139 | AKR1C3 | aldo-keto reductase family 1 member C3 | 10 | 5035354 | 5107686 | protein_coding | HGNC:386 | 2.3877477 | 1.0672057 | -13.2877124 | 2.4102982 | 1.1014968 | 3.2071057 | -13.2877124 | 0.0175386 | 1.6216712 | 4.8272340 | 2.2378075 | 4.0489895 | 0.4470131 | 2.0015284 |
| ENSG00000133059 | -1.8212050 | -1.1722761 | 4.083164 | 9.137660 | 0.0027852 | 0.3740648 | ENSG00000133059 | DSTYK | dual serine/threonine and tyrosine protein kinase | 1 | 205142505 | 205211702 | protein_coding | HGNC:29043 | 2.7954945 | 1.1495384 | 1.7634558 | 1.8743957 | 2.1330897 | 2.5172918 | 0.0021106 | 0.0740820 | 0.0360137 | 0.4589195 | 1.0937461 | 0.8109720 | 0.0377013 | 2.1339100 |
| ENSG00000234338 | 1.3444044 | 0.6880803 | 4.406182 | 9.120544 | 0.0027870 | 0.3740648 | ENSG00000234338 | 7 | 64835280 | 64836882 | processed_pseudogene | 3.9045970 | 3.2636459 | 3.7393544 | 3.2760724 | 3.6463705 | 4.2496572 | 4.2364180 | 5.2260309 | 5.0901856 | 4.1788962 | 4.5589341 | 4.3813927 | 4.9123442 | 3.7218724 | |||
| ENSG00000148737 | 1.1913416 | 1.0711400 | 5.597446 | 9.095833 | 0.0028013 | 0.3740648 | ENSG00000148737 | TCF7L2 | transcription factor 7 like 2 | 10 | 112950247 | 113167678 | protein_coding | HGNC:11641 | 4.6903072 | 5.2093584 | 4.0480518 | 4.7330388 | 3.7055343 | 6.5920196 | 5.6612414 | 4.9936838 | 6.2270402 | 4.9612560 | 6.6394567 | 6.0317434 | 5.7130906 | 5.1663700 |
| ENSG00000182389 | 3.9095497 | 6.4905594 | 1.626634 | 9.907858 | 0.0028212 | 0.3740648 | ENSG00000182389 | CACNB4 | calcium voltage-gated channel auxiliary subunit beta 4 | 2 | 151832771 | 152099167 | protein_coding | HGNC:1404 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -2.5030285 | -1.5282403 | 0.8355902 | 3.3770190 | 2.6057117 | -2.5195115 | -13.2877124 |
| ENSG00000248905 | -1.1552121 | -0.4314471 | 8.738746 | 9.028201 | 0.0028658 | 0.3740648 | ENSG00000248905 | FMN1 | formin 1 | 15 | 32765544 | 33194714 | protein_coding | HGNC:3768 | 7.0423226 | 5.4786355 | 6.7616918 | 6.6843926 | 6.8654091 | 7.2878039 | 4.9005166 | 4.7142861 | 5.4209539 | 6.4085150 | 5.4516907 | 6.0080135 | 5.0438182 | 6.7827123 |
| ENSG00000187800 | 2.4836795 | 3.0404997 | 4.122015 | 8.671321 | 0.0028781 | 0.3740648 | ENSG00000187800 | PEAR1 | platelet endothelial aggregation receptor 1 | 1 | 156893698 | 156916429 | protein_coding | HGNC:33631 | -2.3953745 | 2.1167380 | 0.0216872 | -1.1991527 | -0.5135595 | -13.2877124 | 3.1556225 | 3.4521920 | 3.2983326 | 1.2679953 | 5.5035510 | 4.5781727 | 3.3071338 | 0.1545534 |
| ENSG00000179564 | 0.9704118 | 0.3542652 | 6.987003 | 8.964784 | 0.0029497 | 0.3740648 | ENSG00000179564 | LSMEM2 | leucine rich single-pass membrane protein 2 | 3 | 50279087 | 50288114 | protein_coding | HGNC:26781 | 6.9564092 | 6.9864450 | 6.9428061 | 6.3393825 | 6.8529220 | 6.5044959 | 7.8624675 | 7.4105646 | 7.5890488 | 7.3010587 | 6.9498105 | 7.1360981 | 7.6327662 | 6.7843692 |
| ENSG00000156535 | -1.2243937 | -0.5302166 | 6.224155 | 8.958453 | 0.0029600 | 0.3740648 | ENSG00000156535 | CD109 | CD109 molecule | 6 | 73695785 | 73828316 | protein_coding | HGNC:21685 | 3.3477650 | 3.7942957 | 4.1480996 | 4.4165842 | 3.1207182 | 3.8299759 | 2.7158027 | 2.6998756 | 1.7009191 | 3.2020998 | 3.3141061 | 3.2591896 | 2.4434409 | 3.8423077 |
| ENSG00000169136 | 2.0030478 | 1.2252246 | 4.856737 | 8.893795 | 0.0030794 | 0.3740648 | ENSG00000169136 | ATF5 | activating transcription factor 5 | 19 | 49928702 | 49933935 | protein_coding | HGNC:790 | 4.4045693 | 3.3831676 | 1.3810181 | 2.6675048 | 3.6918318 | 4.0415856 | 4.6345724 | 4.9246565 | 6.0827988 | 4.7543768 | 4.8464596 | 4.8011530 | 5.3574566 | 3.5435182 |
| ENSG00000125414 | 3.1138209 | 0.1484581 | 4.724751 | 8.781524 | 0.0031324 | 0.3740648 | ENSG00000125414 | MYH2 | myosin heavy chain 2 | 17 | 10521148 | 10549700 | protein_coding | HGNC:7572 | -1.8549408 | -13.2877124 | -2.0224197 | -13.2877124 | 2.6897983 | 4.9303165 | 4.1680736 | 2.5091883 | 4.2752478 | 1.6665012 | -0.4832445 | 0.9596975 | 3.8424138 | 2.6425523 |
| ENSG00000165152 | -2.7977979 | -1.2624622 | 2.755629 | 8.154241 | 0.0031699 | 0.3740648 | ENSG00000165152 | PGAP4 | post-GPI attachment to proteins GalNAc transferase 4 | 9 | 101473170 | 101533537 | protein_coding | HGNC:28180 | 2.0133050 | 1.3084855 | 1.3307982 | 2.0582784 | 0.3108136 | 1.9021431 | -13.2877124 | -1.4678965 | -0.4549430 | 0.1539000 | 0.3265316 | 0.2427964 | -1.4591157 | 1.5987039 |
| ENSG00000069943 | 1.1553661 | 1.1560524 | 6.321832 | 8.794801 | 0.0031891 | 0.3740648 | ENSG00000069943 | PIGB | phosphatidylinositol glycan anchor biosynthesis class B | 15 | 55318960 | 55355648 | protein_coding | HGNC:8959 | 6.1134852 | 7.0372985 | 6.9187816 | 6.3238582 | 6.6319656 | 6.7655261 | 6.8872141 | 7.6359346 | 8.2982353 | 7.3063598 | 8.2648521 | 7.8637836 | 7.7189712 | 6.6669199 |
| ENSG00000227715 | -6.2400119 | -4.9438020 | 5.031909 | 7.930225 | 0.0031993 | 0.3740648 | ENSG00000227715 | HLA-A | major histocompatibility complex, class I, A | HSCHR6_MHC_MCF_CTG1 | 1286636 | 1289979 | protein_coding | HGNC:4931 | 1.1447845 | -0.4907704 | 7.4368742 | 7.7647597 | 0.5907352 | -13.2877124 | 0.1601341 | -0.4957518 | -13.2877124 | -13.2877124 | 1.7452167 | 0.7452597 | -0.7157363 | 6.0414093 |
| ENSG00000082397 | 1.7721109 | 0.7684464 | 4.258648 | 8.762204 | 0.0032345 | 0.3740648 | ENSG00000082397 | EPB41L3 | erythrocyte membrane protein band 4.1 like 3 | 18 | 5392381 | 5630700 | protein_coding | HGNC:3380 | 2.6860561 | 2.6672089 | 0.7888744 | 1.6494453 | 1.5960554 | 1.5320785 | 3.4754477 | 2.7848455 | 4.8588413 | 2.3122885 | 3.0555178 | 2.7312441 | 3.9705999 | 1.9737670 |
| ENSG00000149294 | 0.3906273 | 2.9733003 | 2.369297 | 7.534296 | 0.0032454 | 0.3740648 | ENSG00000149294 | NCAM1 | neural cell adhesion molecule 1 | 11 | 112961275 | 113278436 | protein_coding | HGNC:7656 | -0.0941716 | 1.1457831 | -13.2877124 | -13.2877124 | 2.7769847 | -13.2877124 | 2.5459207 | 2.4420334 | -13.2877124 | 0.6678485 | 3.3465369 | 2.5559069 | 1.9099624 | 0.7375362 |
| ENSG00000206460 | 3.0936817 | -5.1533805 | 3.310273 | 8.218502 | 0.0032619 | 0.3740648 | ENSG00000206460 | CDSN | corneodesmosin | HSCHR6_MHC_QBL_CTG1 | 2373089 | 2378448 | protein_coding | HGNC:1802 | -13.2877124 | -13.2877124 | 2.2164260 | 2.6874030 | -13.2877124 | -13.2877124 | 3.8117024 | -13.2877124 | 4.6870256 | -13.2877124 | -13.2877124 | -13.2877124 | 3.7297966 | 0.8861381 |
| ENSG00000175229 | -2.7291268 | -0.9365568 | 3.048932 | 8.290517 | 0.0032948 | 0.3740648 | ENSG00000175229 | GAL3ST3 | galactose-3-O-sulfotransferase 3 | 11 | 66040765 | 66049161 | protein_coding | HGNC:24144 | 2.9326682 | 1.4506121 | 3.1167625 | 3.1802473 | 1.7599164 | 1.0631930 | -0.5717440 | 1.1401831 | -1.0711029 | 2.6374447 | 1.7633627 | 2.2656124 | 0.1604246 | 2.4847313 |
| ENSG00000152953 | 1.4733193 | 1.7543486 | 4.488598 | 8.720222 | 0.0033109 | 0.3740648 | ENSG00000152953 | STK32B | serine/threonine kinase 32B | 4 | 5051480 | 5500994 | protein_coding | HGNC:14217 | 2.0104547 | 3.4810460 | -0.0632132 | 2.3023773 | 1.9653096 | 1.8289975 | 3.5938519 | 3.4466466 | 3.6365750 | 4.0691225 | 3.9243554 | 3.9985540 | 3.5612931 | 2.2500939 |
| ENSG00000176435 | 1.2347353 | 3.4979254 | 2.550614 | 7.478689 | 0.0033760 | 0.3740648 | ENSG00000176435 | CLEC14A | C-type lectin domain containing 14A | 14 | 38254000 | 38256093 | protein_coding | HGNC:19832 | -13.2877124 | 2.0525223 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 2.0295320 | -0.4845903 | 0.1153196 | 3.0120820 | 3.7272137 | 3.4135121 | 0.9710104 | -0.5322662 |
| ENSG00000152234 | -0.3844144 | -1.1059029 | 5.730173 | 8.658595 | 0.0033918 | 0.3740648 | ENSG00000152234 | ATP5F1A | ATP synthase F1 subunit alpha | 18 | 46080248 | 46104334 | protein_coding | HGNC:823 | 5.3195284 | 5.5987609 | 5.5612405 | 6.7471044 | 5.6574733 | 5.7985987 | 5.2086626 | 4.8767839 | 5.0063681 | 5.1553524 | 4.3734475 | 4.8167359 | 5.0371147 | 5.8628077 |
| ENSG00000111325 | 0.8410817 | -0.1488178 | 7.375281 | 8.651855 | 0.0033948 | 0.3740648 | ENSG00000111325 | OGFOD2 | 2-oxoglutarate and iron dependent oxygenase domain containing 2 | 12 | 122974580 | 122980043 | protein_coding | HGNC:25823 | 7.1526406 | 7.2861520 | 6.6663968 | 7.0390593 | 7.5218723 | 6.9842689 | 8.0114418 | 8.2127661 | 7.5300935 | 6.7834097 | 7.2052411 | 7.0096887 | 7.9455486 | 7.1324576 |
| ENSG00000204977 | 1.2623174 | 0.8481954 | 8.077950 | 8.586807 | 0.0034965 | 0.3740648 | ENSG00000204977 | TRIM13 | tripartite motif containing 13 | 13 | 49995888 | 50020481 | protein_coding | HGNC:9976 | 6.2680629 | 5.3484128 | 5.2572103 | 5.0824798 | 4.8715573 | 4.7855727 | 6.4028731 | 6.0262255 | 6.5182465 | 6.2185886 | 5.8478968 | 6.0451159 | 6.3306333 | 5.3621890 |
| ENSG00000262102 | -8.7942701 | -8.7942701 | 4.377038 | 9.639960 | 0.0035495 | 0.3740648 | ENSG00000262102 | DSEL | dermatan sulfate epimerase like | HSCHR18_2_CTG2 | 152309 | 162707 | protein_coding | HGNC:18144 | -13.2877124 | -13.2877124 | 3.5429333 | 3.0489204 | 2.8044233 | 2.5099253 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 2.4424250 |
| ENSG00000101255 | 1.3507506 | 1.4974590 | 4.947749 | 8.577765 | 0.0035563 | 0.3740648 | ENSG00000101255 | TRIB3 | tribbles pseudokinase 3 | 20 | 362835 | 397559 | protein_coding | HGNC:16228 | 2.9769996 | 4.8417756 | 3.2736725 | 3.9562689 | 2.8053816 | 3.7957623 | 4.3816950 | 4.8346677 | 5.3531886 | 4.7046984 | 5.4571779 | 5.1294516 | 4.9110089 | 3.7834787 |
| ENSG00000087510 | -3.2349948 | 0.6158484 | 2.978051 | 7.812619 | 0.0035588 | 0.3740648 | ENSG00000087510 | TFAP2C | transcription factor AP-2 gamma | 20 | 56629306 | 56639283 | protein_coding | HGNC:11744 | 0.6225443 | 2.5387984 | 2.1338587 | 2.9598771 | 1.9201134 | 0.7041655 | 0.0687795 | -13.2877124 | -13.2877124 | 3.5320304 | 1.9356766 | 2.9442285 | -1.5159081 | 2.0550707 |
| ENSG00000134668 | -2.0840120 | -1.5503623 | 3.940140 | 8.556906 | 0.0035792 | 0.3740648 | ENSG00000134668 | SPOCD1 | SPOC domain containing 1 | 1 | 31790422 | 31816022 | protein_coding | HGNC:26338 | 5.0137405 | 4.1357687 | 3.9389675 | 4.3683324 | 4.2477317 | 3.7683957 | 2.7937107 | 5.1681167 | -1.7070487 | 4.3362448 | 1.5132396 | 3.5269427 | 3.8478396 | 4.3037866 |
| ENSG00000054983 | 0.4407641 | 2.2847739 | 2.303416 | 7.517518 | 0.0035823 | 0.3740648 | ENSG00000054983 | GALC | galactosylceramidase | 14 | 87837820 | 87993665 | protein_coding | HGNC:4115 | 0.8399459 | 2.3686047 | -0.3097796 | -13.2877124 | 2.4501946 | 1.1529226 | 1.3453521 | -0.4178583 | 1.8141017 | 4.6169137 | 2.6286637 | 3.9411995 | 1.1818156 | 1.3645539 |
| ENSG00000093072 | -0.7769501 | 1.5990353 | 2.116245 | 7.448115 | 0.0035897 | 0.3740648 | ENSG00000093072 | ADA2 | adenosine deaminase 2 | 22 | 17178790 | 17258235 | protein_coding | HGNC:1839 | 1.8573178 | 0.1954270 | 0.1409775 | -0.5210510 | -0.3943236 | 1.1374740 | -0.9526068 | -1.0340658 | -0.6813095 | 1.1889275 | 2.0843398 | 1.7050140 | -0.8813046 | 0.6673190 |
| ENSG00000146197 | 1.4003744 | 0.7299753 | 7.604679 | 8.529617 | 0.0035898 | 0.3740648 | ENSG00000146197 | SCUBE3 | signal peptide, CUB domain and EGF like domain containing 3 | 6 | 35213956 | 35253079 | protein_coding | HGNC:13655 | 5.0151247 | 4.4755781 | 4.1598919 | 4.0181589 | 4.1424532 | 4.7001726 | 5.8468435 | 4.5707014 | 6.2652511 | 4.6640087 | 5.5693613 | 5.1865679 | 5.7209715 | 4.4629076 |
| ENSG00000204469 | -9.2402572 | -6.1239037 | 4.775132 | 8.604227 | 0.0035929 | 0.3740648 | ENSG00000204469 | PRRC2A | proline rich coiled-coil 2A | 6 | 31620715 | 31637771 | protein_coding | HGNC:13918 | 4.3989246 | 4.9125458 | -13.2877124 | -0.7840059 | -13.2877124 | 3.2126588 | -13.2877124 | -13.2877124 | -13.2877124 | 0.9370377 | -13.2877124 | -0.0628869 | -13.2877124 | 3.3473290 |
| ENSG00000241644 | 3.0017075 | 6.4881744 | 1.543857 | 9.032215 | 0.0036240 | 0.3740648 | ENSG00000241644 | INMT | indolethylamine N-methyltransferase | 7 | 30697985 | 30757602 | protein_coding | HGNC:6069 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 1.4585479 | 1.9410815 | 2.2306264 | 2.0931055 | -0.1263096 | -13.2877124 |
| ENSG00000122641 | 1.3558382 | 2.2179706 | 5.665736 | 8.518394 | 0.0036415 | 0.3740648 | ENSG00000122641 | INHBA | inhibin subunit beta A | 7 | 41667168 | 41705834 | protein_coding | HGNC:6066 | 3.8255523 | 3.6228992 | 3.1791135 | 1.9242611 | 1.6893211 | 1.4941007 | 3.3167886 | 4.2127491 | 4.1465930 | 3.6205037 | 5.8764565 | 5.1506984 | 3.9454200 | 2.9194133 |
| ENSG00000020633 | 3.4267046 | 3.9808310 | 2.084078 | 8.129240 | 0.0036586 | 0.3740648 | ENSG00000020633 | RUNX3 | RUNX family transcription factor 3 | 1 | 24899511 | 24965121 | protein_coding | HGNC:10473 | -2.3500222 | 1.2960950 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 0.4061023 | 1.4897227 | -1.3155403 | 2.0069026 | 3.4037457 | 2.8681623 | 0.5962119 | -1.1777861 |
| ENSG00000204389 | -7.6709701 | -7.6709701 | 3.341186 | 9.559661 | 0.0036997 | 0.3752345 | ENSG00000204389 | HSPA1A | heat shock protein family A (Hsp70) member 1A | 6 | 31815543 | 31817946 | protein_coding | HGNC:5232 | 4.0006976 | 2.9585515 | -13.2877124 | -13.2877124 | 4.1983427 | 4.2733044 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 3.3570030 |
| ENSG00000169519 | -0.9835489 | -1.5698236 | 4.359521 | 8.377839 | 0.0039133 | 0.3892005 | ENSG00000169519 | METTL15 | methyltransferase 15, mitochondrial 12S rRNA N4-cytidine | 11 | 28108248 | 28527041 | protein_coding | HGNC:26606 | 3.1909523 | 2.7480915 | 3.8163380 | 3.3081213 | 2.9227402 | 3.3224315 | 2.4625364 | 1.0620070 | 2.3446322 | 1.9422281 | 1.1751605 | 1.6090855 | 2.0794058 | 3.2587438 |
| ENSG00000156928 | -1.4115251 | -2.4719219 | 8.385059 | 8.337160 | 0.0039218 | 0.3892005 | ENSG00000156928 | MALSU1 | mitochondrial assembly of ribosomal large subunit 1 | 7 | 23298739 | 23311729 | protein_coding | HGNC:21721 | 7.4071351 | 7.7336585 | 8.4397181 | 8.2299016 | 7.8062128 | 7.7093783 | 4.5910600 | 7.5596557 | 5.2061124 | 5.9861212 | 4.4024635 | 5.4014851 | 6.3789594 | 7.9298924 |
| ENSG00000237165 | -4.6130727 | 3.2730631 | 2.554476 | 7.673606 | 0.0039295 | 0.3892005 | ENSG00000237165 | CDSN | corneodesmosin | HSCHR6_MHC_MCF_CTG1 | 2459207 | 2464559 | protein_coding | HGNC:1802 | -13.2877124 | -13.2877124 | 2.3294549 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 4.4617959 | -13.2877124 | 3.4618024 | -13.2877124 | -0.2553641 |
| ENSG00000227761 | 1.0484001 | -1.9501320 | 5.266557 | 8.269113 | 0.0040854 | 0.4015122 | ENSG00000227761 | BAG6 | BAG cochaperone 6 | HSCHR6_MHC_DBB_CTG1 | 2886791 | 2900476 | protein_coding | HGNC:13919 | 4.6597329 | 6.2837376 | 5.5447692 | 5.2517521 | 4.6276463 | 4.7911792 | 5.6108278 | 6.0932572 | 5.7323637 | 4.9134204 | 3.0258543 | 4.2585468 | 5.8270185 | 5.3241939 |
| ENSG00000115317 | 2.2091250 | 1.0931918 | 7.125961 | 8.172255 | 0.0042409 | 0.4015789 | ENSG00000115317 | HTRA2 | HtrA serine peptidase 2 | 2 | 74529596 | 74533350 | protein_coding | HGNC:14348 | 6.7375498 | 7.1653017 | 4.8660038 | 4.5614595 | 3.8090615 | 4.3299912 | 7.7650367 | 6.4936457 | 8.8347082 | 6.9965894 | 6.9806311 | 6.9886323 | 7.9928663 | 5.8122916 |
| ENSG00000204851 | 2.0511298 | 0.9048684 | 4.754988 | 8.184744 | 0.0042529 | 0.4015789 | ENSG00000204851 | PNMA8B | PNMA family member 8B | 19 | 46486906 | 46495879 | protein_coding | HGNC:29206 | 2.4288049 | 1.4280727 | -1.2408237 | 0.5371937 | 2.0981281 | 2.7446853 | 3.7397760 | 3.0648166 | 4.0159782 | 3.1964834 | 1.6393845 | 2.6185373 | 3.6593590 | 1.8027855 |
| ENSG00000171790 | 1.3588117 | 0.9189487 | 6.432399 | 8.144955 | 0.0042983 | 0.4015789 | ENSG00000171790 | SLFNL1 | schlafen like 1 | 1 | 41015589 | 41023237 | protein_coding | HGNC:26313 | 4.5425707 | 3.8985188 | 3.7780876 | 4.3041844 | 4.3496660 | 4.4598878 | 5.4003068 | 4.8926554 | 5.7236478 | 3.8228409 | 5.7379410 | 5.0772537 | 5.3783028 | 4.2490387 |
| ENSG00000142910 | 2.8915301 | 2.7605651 | 2.915787 | 7.134872 | 0.0043353 | 0.4015789 | ENSG00000142910 | TINAGL1 | tubulointerstitial nephritis antigen like 1 | 1 | 31576485 | 31587686 | protein_coding | HGNC:19168 | -0.9069402 | 0.9392574 | -13.2877124 | 3.8885102 | -13.2877124 | -13.2877124 | 3.6082837 | 1.6019684 | 3.5165389 | 1.6376450 | 4.1212064 | 3.3585283 | 3.1524692 | 1.5245035 |
| ENSG00000176020 | 3.2133267 | -5.1796057 | 3.380992 | 7.680206 | 0.0043373 | 0.4015789 | ENSG00000176020 | AMIGO3 | adhesion molecule with Ig like domain 3 | 3 | 49716829 | 49719684 | protein_coding | HGNC:24075 | -13.2877124 | 2.8374409 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 3.3435862 | 4.8406131 | -13.2877124 | -13.2877124 | -13.2877124 | 3.6931833 | 0.2525792 |
| ENSG00000278119 | 2.3629452 | 0.2587623 | 2.044481 | 6.974848 | 0.0043837 | 0.4015789 | ENSG00000278119 | GOLGA8J | golgin A8 family member J | HSCHR15_4_CTG8 | 2368159 | 2381905 | protein_coding | HGNC:38650 | -1.5459673 | -1.6510515 | -2.6333001 | -13.2877124 | -0.1634424 | -13.2877124 | 0.6465212 | 0.7183095 | 0.7681149 | -1.7290477 | -0.9917713 | -1.3138159 | 0.7118429 | -1.8066355 |
| ENSG00000167306 | 0.9194999 | 1.1064990 | 6.178865 | 8.083225 | 0.0044268 | 0.4015789 | ENSG00000167306 | MYO5B | myosin VB | 18 | 49822789 | 50195164 | protein_coding | HGNC:7603 | 2.7945864 | 3.4697610 | 2.8415207 | 2.1079580 | 2.6826881 | 2.6128750 | 3.1191168 | 3.9828644 | 3.6315110 | 4.1724789 | 3.6237351 | 3.9240412 | 3.6203180 | 2.8085103 |
| ENSG00000134986 | 1.0749670 | 0.8533131 | 6.408012 | 8.072726 | 0.0044456 | 0.4015789 | ENSG00000134986 | NREP | neuronal regeneration related protein | 5 | 111662621 | 111997464 | protein_coding | HGNC:16834 | 6.9310914 | 6.8634223 | 4.9939551 | 6.0960006 | 6.1694769 | 6.4066406 | 7.2820769 | 6.9593931 | 7.4229840 | 6.3830815 | 7.4997324 | 7.0468496 | 7.2342511 | 6.3679356 |
| ENSG00000156030 | -1.3367422 | -0.6209897 | 5.053553 | 8.077037 | 0.0044607 | 0.4015789 | ENSG00000156030 | MIDEAS | mitotic deacetylase associated SANT domain protein | 14 | 73715122 | 73790285 | protein_coding | HGNC:19853 | 2.3548578 | 3.6524058 | 3.3938876 | 3.8110618 | 3.2287437 | 3.9071842 | 1.9256391 | 1.3729354 | 2.4324739 | 3.9125894 | 3.6427009 | 3.7839471 | 1.9741871 | 3.4728073 |
| ENSG00000143387 | -1.3866084 | -0.8865103 | 5.393091 | 8.066585 | 0.0044705 | 0.4015789 | ENSG00000143387 | CTSK | cathepsin K | 1 | 150794880 | 150809577 | protein_coding | HGNC:2536 | 4.7246887 | 5.5058572 | 5.9623493 | 6.2984657 | 5.7404299 | 6.1603343 | 3.8064959 | 4.9516162 | 3.5445043 | 5.0839841 | 4.5685033 | 4.8491451 | 4.2378803 | 5.8155967 |
| ENSG00000149932 | -0.6476158 | -1.3794176 | 4.421013 | 8.078856 | 0.0044899 | 0.4015789 | ENSG00000149932 | TMEM219 | transmembrane protein 219 | 16 | 29940885 | 29973050 | protein_coding | HGNC:25201 | 5.3140843 | 5.6682740 | 5.6529967 | 6.2269900 | 5.7612729 | 5.6053531 | 5.3313879 | 4.6006279 | 4.8684297 | 4.8029983 | 4.0166178 | 4.4627375 | 4.9655682 | 5.7314643 |
| ENSG00000111640 | -0.8761762 | -0.6709205 | 10.140524 | 8.047964 | 0.0044902 | 0.4015789 | ENSG00000111640 | GAPDH | glyceraldehyde-3-phosphate dehydrogenase | 12 | 6534512 | 6538374 | protein_coding | HGNC:4141 | 10.6426246 | 10.7133591 | 11.2048414 | 11.5811585 | 10.8842274 | 11.1613433 | 10.2902577 | 10.1173236 | 9.6014559 | 10.1454828 | 10.5147990 | 10.3419269 | 10.0314905 | 11.0681475 |
| ENSG00000184557 | -2.0198969 | -2.3073967 | 4.020141 | 8.048287 | 0.0045196 | 0.4015789 | ENSG00000184557 | SOCS3 | suppressor of cytokine signaling 3 | 17 | 78356778 | 78360077 | protein_coding | HGNC:19391 | 2.0741046 | 3.3343137 | 4.3968457 | 5.0975439 | 2.9192318 | 1.7772493 | 1.9490384 | 1.3826363 | 1.0346651 | 1.0573823 | 3.8242137 | 3.0219869 | 1.5054255 | 3.7476314 |
| ENSG00000197915 | 1.8234717 | 1.4323877 | 8.392650 | 8.029865 | 0.0045296 | 0.4015789 | ENSG00000197915 | HRNR | hornerin | 1 | 152212076 | 152224193 | protein_coding | HGNC:20846 | 3.9711771 | 4.9344679 | 2.8945293 | 3.0676539 | 5.3260221 | 5.4433140 | 6.2506005 | 6.3431774 | 6.2464456 | 5.2240108 | 6.5255801 | 6.0168531 | 6.2807704 | 4.6019680 |
| ENSG00000160298 | 1.3666167 | 0.5611312 | 3.563387 | 7.938783 | 0.0045775 | 0.4030135 | ENSG00000160298 | C21orf58 | chromosome 21 open reading frame 58 | 21 | 46300181 | 46323875 | protein_coding | HGNC:1300 | 2.5775680 | 2.8211353 | 2.3445246 | 2.6374554 | 3.5669499 | 0.8432394 | 3.2451266 | 3.6396735 | 3.6277219 | 2.3264804 | 2.9769677 | 2.6880794 | 3.5154421 | 2.6623176 |
| ENSG00000281216 | -7.4104334 | -7.4104334 | 3.067836 | 8.961803 | 0.0046361 | 0.4049923 | ENSG00000281216 | KIF26B | kinesin family member 26B | HSCHR1_1_CTG32_1 | 47982 | 407457 | protein_coding | HGNC:25484 | 1.7672705 | -13.2877124 | 0.6875472 | 2.0777267 | 1.1668292 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 0.9362674 |
| ENSG00000133110 | 4.2710413 | 3.2531658 | 9.940895 | 7.967789 | 0.0046654 | 0.4049923 | ENSG00000133110 | POSTN | periostin | 13 | 37562583 | 37598844 | protein_coding | HGNC:16953 | 4.6914338 | 7.7538893 | 3.9304450 | 4.1318557 | 5.8703544 | 6.1785337 | 4.7653462 | 8.2155474 | 11.5463387 | 5.5122214 | 10.1460075 | 9.2029797 | 10.1099600 | 6.0782307 |
| ENSG00000158246 | -1.7017771 | -1.0907073 | 5.139862 | 7.950746 | 0.0047361 | 0.4049923 | ENSG00000158246 | TENT5B | terminal nucleotidyltransferase 5B | 1 | 27005020 | 27012850 | protein_coding | HGNC:28273 | 5.3510663 | 4.1847187 | 4.8727768 | 5.6806621 | 4.8481314 | 4.0872978 | 2.3638672 | 4.0195801 | 2.1499737 | 4.1158633 | 3.4537255 | 3.8224523 | 3.1045777 | 4.9494829 |
| ENSG00000248449 | 2.8388668 | 2.3761428 | 3.152582 | 7.133017 | 0.0047572 | 0.4049923 | ENSG00000248449 | PCDHGB8P | 5 | 141426286 | 141429158 | transcribed_unitary_pseudogene | HGNC:8715 | -0.7053563 | 1.7957404 | -13.2877124 | -13.2877124 | -13.2877124 | 1.2829836 | 1.3845201 | 2.2211176 | 3.8485579 | 2.0778224 | 2.8681445 | 2.5264382 | 2.8532635 | 0.1196762 | |
| ENSG00000188451 | 1.0374416 | 1.2356963 | 4.197515 | 7.939437 | 0.0047597 | 0.4049923 | ENSG00000188451 | SRP72P2 | 6 | 158237336 | 158242797 | processed_pseudogene | HGNC:31096 | 2.9893650 | 3.4026987 | 3.1283160 | 3.4281365 | 2.1998356 | 3.4755961 | 4.5018640 | 3.4397935 | 3.9246783 | 4.1692013 | 4.5066965 | 4.3477954 | 4.0207107 | 3.1630525 | |
| ENSG00000133121 | -1.5056348 | -0.7397357 | 4.181172 | 7.937553 | 0.0048182 | 0.4053860 | ENSG00000133121 | STARD13 | StAR related lipid transfer domain containing 13 | 13 | 33103137 | 33350630 | protein_coding | HGNC:19164 | 1.6705055 | 2.9268845 | 3.3806139 | 5.2064480 | 2.0594581 | 3.0898185 | 3.3331824 | 2.5339592 | 0.8391445 | 2.1183730 | 1.8122370 | 1.9734100 | 2.5573603 | 3.5608837 |
| ENSG00000046604 | -6.3197284 | -6.3197284 | 2.235506 | 8.618000 | 0.0048643 | 0.4053860 | ENSG00000046604 | DSG2 | desmoglein 2 | 18 | 31497624 | 31551351 | protein_coding | HGNC:3049 | -2.7650426 | -0.2640706 | 1.4588513 | 2.4294727 | -0.4684953 | 0.2223990 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 0.8751368 |
| ENSG00000171453 | 0.7341627 | 0.6048101 | 6.006258 | 7.869210 | 0.0049002 | 0.4053860 | ENSG00000171453 | POLR1C | RNA polymerase I and III subunit C | 6 | 43509702 | 43562419 | protein_coding | HGNC:20194 | 5.2369379 | 5.4802873 | 5.2501813 | 5.7470952 | 5.5982934 | 5.6237591 | 6.2576008 | 6.1427143 | 5.7052885 | 6.3037688 | 5.8992479 | 6.1156403 | 6.0541328 | 5.5018359 |
| ENSG00000148943 | 1.1102153 | 0.5603432 | 4.704034 | 7.862810 | 0.0049634 | 0.4053860 | ENSG00000148943 | LIN7C | lin-7 homolog C, crumbs cell polarity complex component | 11 | 27494418 | 27506769 | protein_coding | HGNC:17789 | 2.0663834 | 2.4856048 | 2.5619774 | 1.9995747 | 2.2382262 | 2.7916686 | 3.3796716 | 2.7815030 | 3.7281054 | 2.8185602 | 3.0233592 | 2.9245908 | 3.3474647 | 2.3847635 |
| ENSG00000066468 | -3.9014374 | 0.2090931 | 3.160214 | 7.242877 | 0.0050218 | 0.4053860 | ENSG00000066468 | FGFR2 | fibroblast growth factor receptor 2 | 10 | 121478332 | 121598458 | protein_coding | HGNC:3689 | 1.8089628 | -13.2877124 | 2.5117451 | 2.9278547 | 2.0763248 | 4.5202530 | 1.0902701 | -0.9362900 | -13.2877124 | 0.9444402 | 2.9927556 | 2.3051493 | -0.1779829 | 2.8738624 |
| ENSG00000285162 | 3.5749985 | 2.5190618 | 3.183466 | 6.878830 | 0.0050333 | 0.4053860 | ENSG00000285162 | NA | NA | NA | NA | NA | NA | NA | -2.0449610 | -13.2877124 | -2.1788809 | -13.2877124 | 0.8697782 | -13.2877124 | 1.3212320 | -2.2124472 | 3.5162415 | 1.7803979 | 0.5330250 | 1.2875222 | 2.2384157 | -1.3890743 |
| ENSG00000244556 | 0.5281789 | 1.3171170 | 3.885991 | 7.804008 | 0.0050530 | 0.4053860 | ENSG00000244556 | ODCP | 7 | 129028889 | 129030527 | processed_pseudogene | HGNC:8110 | 3.0296137 | 3.5300559 | 2.5163755 | 3.7517133 | 3.2208320 | 3.4335436 | 3.5735441 | 3.5820004 | 3.7183609 | 4.4884747 | 4.5944383 | 4.5424291 | 3.6261774 | 3.2985891 | |
| ENSG00000172803 | 0.1381156 | -1.1911167 | 6.301032 | 7.792913 | 0.0050760 | 0.4053860 | ENSG00000172803 | SNX32 | sorting nexin 32 | 11 | 65833834 | 65856896 | protein_coding | HGNC:26423 | 5.7340247 | 5.6097293 | 6.2734328 | 5.6296531 | 5.6475740 | 6.0357583 | 5.8147750 | 6.1347121 | 5.3867177 | 4.9968451 | 4.0974151 | 4.6161159 | 5.8106999 | 5.8440537 |
| ENSG00000115474 | 0.8342308 | 0.0108739 | 5.358141 | 7.794137 | 0.0050962 | 0.4053860 | ENSG00000115474 | KCNJ13 | potassium inwardly rectifying channel subfamily J member 13 | 2 | 232765802 | 232776565 | protein_coding | HGNC:6259 | 4.1592250 | 4.1228850 | 4.0397848 | 4.7184386 | 3.6374069 | 5.8820147 | 5.0243884 | 4.7640688 | 5.1189823 | 4.7196583 | 4.4276514 | 4.5810300 | 4.9768054 | 4.6388645 |
| ENSG00000185112 | 1.5173281 | 2.0956535 | 3.520375 | 7.548225 | 0.0050988 | 0.4053860 | ENSG00000185112 | FAM43A | family with sequence similarity 43 member A | 3 | 194685883 | 194689037 | protein_coding | HGNC:26888 | 1.1066043 | 2.0227406 | 1.5251077 | 2.3078805 | -0.1805427 | 1.5102125 | 0.6113849 | 3.2671224 | 3.5042962 | 3.0414494 | 4.0311897 | 3.6195803 | 2.9070454 | 1.5670143 |
| ENSG00000221883 | 1.2498346 | 0.8641513 | 4.734216 | 7.784729 | 0.0051517 | 0.4053860 | ENSG00000221883 | ARIH2OS | 3 | 48917765 | 48918829 | lncRNA | HGNC:34425 | 4.5481034 | 5.0628793 | 3.6245004 | 3.9336344 | 4.5882521 | 3.8174244 | 4.4586417 | 5.3710860 | 5.8174764 | 4.8403458 | 5.0168736 | 4.9313082 | 5.3191439 | 4.3527006 | |
| ENSG00000183682 | 1.2292969 | 0.8731036 | 5.790813 | 7.724302 | 0.0052640 | 0.4053860 | ENSG00000183682 | BMP8A | bone morphogenetic protein 8a | 1 | 39491636 | 39529869 | protein_coding | HGNC:21650 | 2.9227364 | 4.1557932 | 3.2121008 | 2.9052554 | 2.6351078 | 2.1130924 | 4.0418250 | 4.4835633 | 4.2545725 | 4.2367871 | 3.7922472 | 4.0315720 | 4.2712624 | 3.1348851 |
| ENSG00000153130 | -1.2469286 | -2.3789218 | 3.299478 | 7.599784 | 0.0053585 | 0.4053860 | ENSG00000153130 | SCOC | short coiled-coil protein | 4 | 140257286 | 140385728 | protein_coding | HGNC:20335 | 3.0977259 | 2.8454704 | 2.6650114 | 2.1785754 | 3.3175120 | 5.0648524 | -1.2521160 | 2.1615272 | 2.5701372 | 0.8772362 | 1.1166921 | 1.0019262 | 1.8523149 | 3.5455196 |
| ENSG00000284790 | 3.8287999 | 2.8860497 | 2.106904 | 7.201823 | 0.0053611 | 0.4053860 | ENSG00000284790 | NA | NA | NA | NA | NA | NA | NA | 0.3424273 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 1.2369432 | 1.9473860 | 2.5667231 | 1.6098022 | 0.4730845 | 1.1506162 | 2.0165391 | -2.2419664 |
| ENSG00000175895 | -3.3484611 | 0.3048205 | 2.314421 | 7.146823 | 0.0053876 | 0.4053860 | ENSG00000175895 | PLEKHF2 | pleckstrin homology and FYVE domain containing 2 | 8 | 95115642 | 95156698 | protein_coding | HGNC:20757 | 2.1925496 | 0.7803479 | 3.0479004 | 2.6723298 | 0.8985853 | 2.4898925 | -1.9523276 | -13.2877124 | -1.8667942 | 2.1555155 | 0.3292315 | 1.5139005 | -2.4936190 | 2.2436143 |
| ENSG00000262096 | -3.5329542 | -3.8460395 | 2.082405 | 7.145995 | 0.0053893 | 0.4053860 | ENSG00000262096 | PCDHB19P | 5 | 141239923 | 141242293 | transcribed_unprocessed_pseudogene | HGNC:14549 | 2.4230946 | 0.5102196 | 1.6073497 | 1.4716380 | -13.2877124 | 3.0073864 | -1.6281891 | -1.5574503 | -13.2877124 | -13.2877124 | -1.3457368 | -2.3453702 | -2.1771312 | 1.7830316 | |
| ENSG00000178358 | 1.3780505 | 2.4759988 | 2.419397 | 6.795007 | 0.0054375 | 0.4053860 | ENSG00000178358 | OR2D3 | olfactory receptor family 2 subfamily D member 3 | 11 | 6921002 | 6921994 | protein_coding | HGNC:15146 | 2.5834483 | 1.4976956 | 1.8352559 | 1.2176489 | -13.2877124 | -13.2877124 | 3.3470672 | 2.6374853 | 2.1705039 | 4.1164414 | 3.9557888 | 4.0383501 | 2.8004717 | 1.2939431 |
| ENSG00000144401 | 1.0193728 | 0.3944910 | 6.947270 | 7.640398 | 0.0054618 | 0.4053860 | ENSG00000144401 | METTL21A | methyltransferase 21A, HSPA lysine | 2 | 207580631 | 207625928 | protein_coding | HGNC:30476 | 5.8212295 | 6.2424737 | 5.1690782 | 5.8371750 | 5.2175892 | 4.4259263 | 6.4844877 | 5.9500667 | 5.7980140 | 5.7061886 | 5.6647681 | 5.6856271 | 6.1085458 | 5.5653282 |
| ENSG00000101265 | -2.2423424 | -0.2094679 | 3.047122 | 7.387035 | 0.0054808 | 0.4053860 | ENSG00000101265 | RASSF2 | Ras association domain family member 2 | 20 | 4780023 | 4823608 | protein_coding | HGNC:9883 | 0.6400360 | 1.7891625 | 1.1506260 | 0.5446832 | 1.4535392 | 1.9220951 | -2.8810715 | -0.2559802 | -1.1879569 | 1.4981150 | 0.5924135 | 1.1152001 | -1.0871377 | 1.3431077 |
| ENSG00000118600 | 1.5413812 | 1.1049002 | 4.880654 | 7.651656 | 0.0054911 | 0.4053860 | ENSG00000118600 | RXYLT1 | ribitol xylosyltransferase 1 | 12 | 63779833 | 63809792 | protein_coding | HGNC:13530 | 2.7227462 | 2.9973753 | 2.5959321 | 1.1592242 | 3.2339112 | 3.4762314 | 4.0592911 | 4.0352886 | 4.2218257 | 4.0805074 | 3.4319664 | 3.7923768 | 4.1078771 | 2.8547571 |
| ENSG00000218732 | 3.0609213 | 1.7533739 | 2.510475 | 6.671324 | 0.0055211 | 0.4053860 | ENSG00000218732 | 6 | 72316599 | 72317436 | processed_pseudogene | -13.2877124 | -13.2877124 | 1.3321895 | -13.2877124 | 2.3780746 | 3.8982239 | 4.8981977 | 3.6425435 | 4.5114000 | 3.9446667 | 1.5440694 | 3.1948838 | 4.4399630 | 1.9149938 | |||
| ENSG00000185630 | -1.4743726 | -1.5160940 | 6.331266 | 7.585531 | 0.0056121 | 0.4053860 | ENSG00000185630 | PBX1 | PBX homeobox 1 | 1 | 164555584 | 164899296 | protein_coding | HGNC:8632 | 5.6124866 | 3.5386335 | 3.9284695 | 5.3620426 | 6.2720125 | 6.6520641 | 4.9590238 | 5.2191026 | 4.4343215 | 4.7881001 | 3.6928674 | 4.3420114 | 4.9064515 | 5.6183814 |
| ENSG00000111452 | 2.1403109 | 2.4657657 | 3.511958 | 7.173266 | 0.0056485 | 0.4053860 | ENSG00000111452 | ADGRD1 | adhesion G protein-coupled receptor D1 | 12 | 130953907 | 131141469 | protein_coding | HGNC:19893 | 0.7478961 | 0.9411011 | -13.2877124 | -13.2877124 | 0.2004466 | 3.3792259 | 2.4759448 | 3.6525346 | 4.2978747 | 3.5233069 | 3.9829850 | 3.7713771 | 3.6556589 | 1.3366393 |
| ENSG00000184985 | 1.7165377 | 0.7121859 | 3.804090 | 7.514345 | 0.0056486 | 0.4053860 | ENSG00000184985 | SORCS2 | sortilin related VPS10 domain containing receptor 2 | 4 | 7192538 | 7742827 | protein_coding | HGNC:16698 | 3.6084307 | 1.3516736 | 0.6824582 | 1.1203699 | -0.2627978 | 3.2931572 | 1.8412735 | 2.5251215 | 3.1423309 | 1.7110794 | 3.0846960 | 2.5555426 | 2.5984426 | 2.2811442 |
| ENSG00000175426 | 1.7899393 | 1.4210820 | 5.596958 | 7.564787 | 0.0057093 | 0.4053860 | ENSG00000175426 | PCSK1 | proprotein convertase subtilisin/kexin type 1 | 5 | 96390333 | 96434143 | protein_coding | HGNC:8743 | 3.5812825 | 3.4980450 | 1.4720120 | 1.5874274 | 1.9367691 | 2.3797923 | 4.7604208 | 3.2766345 | 4.6888407 | 4.6529761 | 3.2995392 | 4.1294704 | 4.3828167 | 2.6660037 |
| ENSG00000120942 | 0.9935636 | 2.2290858 | 2.624019 | 6.886586 | 0.0057153 | 0.4053860 | ENSG00000120942 | UBIAD1 | UbiA prenyltransferase domain containing 1 | 1 | 11273198 | 11296049 | protein_coding | HGNC:30791 | -2.0803197 | 0.6430601 | -1.2476385 | 0.7020520 | 0.2166883 | 0.3226423 | -1.3119862 | 1.6659926 | 0.7732225 | 1.7962572 | 2.4927851 | 2.1861544 | 0.8169871 | 0.0609093 |
| ENSG00000182957 | -2.9185364 | -0.7419427 | 2.472324 | 6.897666 | 0.0057332 | 0.4053860 | ENSG00000182957 | SPATA13 | spermatogenesis associated 13 | 13 | 23979805 | 24307074 | protein_coding | HGNC:23222 | -0.3586260 | 1.3195168 | 1.8829893 | 1.9691475 | -2.3678807 | 2.0991299 | -2.0192172 | -3.5156453 | -2.0877395 | 2.9936026 | -0.0662204 | 2.1570020 | -2.3975089 | 1.3559302 |
| ENSG00000111912 | 1.6510839 | 1.2162259 | 3.584439 | 7.391568 | 0.0058023 | 0.4053860 | ENSG00000111912 | NCOA7 | nuclear receptor coactivator 7 | 6 | 125781161 | 125932034 | protein_coding | HGNC:21081 | 1.0341262 | 3.9883405 | 1.1650720 | 3.9729572 | 0.8463056 | 1.2152592 | 3.2262169 | 2.8612930 | 5.3571864 | 1.8797908 | 3.2413027 | 2.7155301 | 4.2633946 | 2.7363929 |
| ENSG00000111331 | -2.5530446 | -1.2325531 | 2.162257 | 6.764061 | 0.0058116 | 0.4053860 | ENSG00000111331 | OAS3 | 2’-5’-oligoadenylate synthetase 3 | 12 | 112938051 | 112976460 | protein_coding | HGNC:8088 | 2.8414563 | 0.4765714 | 0.4295645 | 1.0144131 | -1.1053429 | 2.5507369 | -0.1020580 | -3.1454266 | 0.6821804 | -1.1094179 | -1.3524884 | -1.2258400 | -0.1793622 | 1.6048542 |
| ENSG00000125740 | -1.0783412 | -1.4515129 | 5.841742 | 7.499084 | 0.0058594 | 0.4053860 | ENSG00000125740 | FOSB | FosB proto-oncogene, AP-1 transcription factor subunit | 19 | 45467995 | 45475179 | protein_coding | HGNC:3797 | 3.6373032 | 5.6375586 | 5.7361346 | 6.3196658 | 4.9314770 | 4.6254243 | 3.6159749 | 4.8608635 | 4.2092212 | 3.5329859 | 4.1012042 | 3.8448908 | 4.3174915 | 5.3842864 |
| ENSG00000105849 | -1.9961020 | -1.2009931 | 3.038318 | 7.330479 | 0.0058991 | 0.4053860 | ENSG00000105849 | POLR1F | RNA polymerase I subunit F | 7 | 19695461 | 19709037 | protein_coding | HGNC:18027 | 0.6246044 | 2.4342127 | 1.7375289 | 2.8220163 | 1.2846024 | 2.2206206 | 0.1709365 | -1.3423161 | -0.0066198 | 0.5019079 | 3.2826954 | 2.4786883 | -0.2540610 | 2.0267826 |
| ENSG00000186522 | -0.4928755 | -1.4157275 | 4.569571 | 7.500510 | 0.0059105 | 0.4053860 | ENSG00000186522 | SEPTIN10 | septin 10 | 2 | 109542799 | 109614143 | protein_coding | HGNC:14349 | 5.2428521 | 5.1330743 | 4.0708786 | 4.1897053 | 3.4130363 | 4.4904329 | 4.7823637 | 2.5075039 | 3.3199830 | 2.5480926 | 3.5586826 | 3.1401237 | 3.8477306 | 4.5560470 |
| ENSG00000140548 | -1.3548484 | -1.1645055 | 7.634300 | 7.467086 | 0.0059417 | 0.4053860 | ENSG00000140548 | ZNF710 | zinc finger protein 710 | 15 | 90001324 | 90082206 | protein_coding | HGNC:25352 | 6.8297883 | 6.8849360 | 7.6807861 | 7.1107775 | 8.1427520 | 7.0786178 | 6.0515697 | 5.9617759 | 4.0756262 | 6.7089333 | 5.3576378 | 6.1860302 | 5.6000791 | 7.3708897 |
| ENSG00000170430 | -1.7420875 | -1.3090112 | 3.236447 | 7.413108 | 0.0059430 | 0.4053860 | ENSG00000170430 | MGMT | O-6-methylguanine-DNA methyltransferase | 10 | 129467190 | 129770983 | protein_coding | HGNC:7059 | 4.0755393 | 3.1830084 | 4.0425580 | 4.2187946 | 3.6822075 | 4.7878952 | 1.7590548 | 2.8389469 | 1.5343684 | 1.0671782 | 3.0015331 | 2.3368315 | 2.1631074 | 4.0804140 |
| ENSG00000162877 | 3.5799509 | 2.6258635 | 2.973638 | 6.555912 | 0.0059843 | 0.4053860 | ENSG00000162877 | PM20D1 | peptidase M20 domain containing 1 | 1 | 205828025 | 205850132 | protein_coding | HGNC:26518 | 2.8119496 | 0.3033295 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 2.8915506 | 0.2252009 | 4.9886434 | 3.4849669 | -13.2877124 | 2.4849798 | 3.7491305 | 0.4606063 |
| ENSG00000139193 | 0.8635472 | 2.3096145 | 2.351533 | 6.646382 | 0.0060067 | 0.4053860 | ENSG00000139193 | CD27 | CD27 molecule | 12 | 6444955 | 6451718 | protein_coding | HGNC:11922 | 2.0443913 | 1.9585153 | 1.0014492 | -13.2877124 | 0.3434374 | 2.5700633 | 2.1535612 | 1.4153552 | 2.2396935 | 4.3298638 | 3.1251622 | 3.8497671 | 1.9805697 | 1.5211221 |
| ENSG00000205918 | 0.8538122 | -0.1216283 | 8.279062 | 7.442097 | 0.0060147 | 0.4053860 | ENSG00000205918 | PDPK2P | 16 | 2616453 | 2642432 | transcribed_unprocessed_pseudogene | HGNC:49897 | 6.4611520 | 7.9056287 | 7.4486803 | 7.7688789 | 7.2827880 | 7.0745527 | 8.1777132 | 7.9198381 | 8.1394210 | 7.2635792 | 7.2022532 | 7.2332419 | 8.0833852 | 7.3968890 | |
| ENSG00000167244 | 4.1875356 | 4.2963522 | 4.285453 | 6.672381 | 0.0060191 | 0.4053860 | ENSG00000167244 | IGF2 | insulin like growth factor 2 | 11 | 2129112 | 2158391 | protein_coding | HGNC:5466 | 1.0439128 | -13.2877124 | -13.2877124 | -1.2186722 | -2.1175620 | -0.0120549 | -2.6457781 | 4.9589107 | -13.2877124 | -0.9527464 | 4.5887205 | 3.6193687 | 3.3813459 | -0.6920644 |
| ENSG00000228960 | 2.5947589 | 1.9886413 | 8.049919 | 7.439802 | 0.0060244 | 0.4053860 | ENSG00000228960 | OR2A9P | 7 | 144299373 | 144300305 | transcribed_unprocessed_pseudogene | HGNC:8236 | 7.3272730 | 7.7973193 | 3.0538502 | 2.2668024 | 7.7929754 | 6.2264390 | 8.9190344 | 9.4555410 | 8.7636811 | 8.1164535 | 8.9350698 | 8.5830617 | 9.0775304 | 6.8513593 | |
| ENSG00000140105 | 0.8557682 | 0.5385314 | 6.670873 | 7.434002 | 0.0060434 | 0.4053860 | ENSG00000140105 | WARS1 | tryptophanyl-tRNA synthetase 1 | 14 | 100333790 | 100376805 | protein_coding | HGNC:12729 | 5.2853687 | 6.5380137 | 6.2606059 | 6.4467690 | 5.3980516 | 5.9299526 | 6.0216374 | 6.8806470 | 7.0492464 | 5.6030795 | 7.1507430 | 6.5751960 | 6.7153840 | 6.0551423 |
| ENSG00000274829 | -3.5048227 | -1.0164238 | 2.873842 | 6.855036 | 0.0061033 | 0.4072484 | ENSG00000274829 | PARN | poly(A)-specific ribonuclease | HSCHR16_1_CTG1 | 8558 | 205584 | protein_coding | HGNC:8609 | 2.7800875 | 3.9153130 | 4.9033657 | 6.3298136 | 4.6652523 | -13.2877124 | 0.6102200 | -13.2877124 | -13.2877124 | 3.2350372 | 2.1336243 | 2.7869812 | -0.9745536 | 4.7160365 |
| ENSG00000197381 | 0.7182869 | 1.3480279 | 4.708062 | 7.403760 | 0.0061995 | 0.4115011 | ENSG00000197381 | ADARB1 | adenosine deaminase RNA specific B1 | 21 | 45073853 | 45226560 | protein_coding | HGNC:226 | 2.4104857 | 3.9353023 | 2.8425006 | 2.3077540 | 2.4229439 | 2.8255952 | 2.6824791 | 2.5416308 | 3.0049538 | 3.8099237 | 4.3528586 | 4.1067824 | 2.7562808 | 2.9129790 |
| ENSG00000162599 | 1.6206337 | 1.0139578 | 3.987170 | 7.295361 | 0.0063925 | 0.4221070 | ENSG00000162599 | NFIA | nuclear factor I A | 1 | 60865259 | 61462788 | protein_coding | HGNC:7784 | -0.0856819 | 3.8526025 | 0.7375172 | 3.7441795 | 2.7552818 | 1.9533543 | 3.2053866 | 2.2859928 | 2.9241837 | 3.1595376 | 3.5149063 | 3.3481364 | 2.8540886 | 2.7754172 |
| ENSG00000188152 | 1.0358234 | 1.1018461 | 5.334618 | 7.309841 | 0.0064658 | 0.4245143 | ENSG00000188152 | NUTM2G | NUT family member 2G | 9 | 96928310 | 96940253 | protein_coding | HGNC:23449 | 4.5190872 | 4.2710766 | 3.3673293 | 3.5421245 | 3.1892670 | 3.0791224 | 4.4795409 | 4.8754454 | 4.8501382 | 4.9678897 | 4.8386605 | 4.9047216 | 4.7460397 | 3.7686639 |
| ENSG00000176928 | -3.7084098 | 1.3637872 | 2.307811 | 6.971119 | 0.0064960 | 0.4245143 | ENSG00000176928 | GCNT4 | glucosaminyl (N-acetyl) transferase 4 | 5 | 75025346 | 75052558 | protein_coding | HGNC:17973 | -13.2877124 | -2.8096709 | 1.5291968 | 0.0531934 | -0.1080676 | 0.9754446 | -2.9572212 | -13.2877124 | -13.2877124 | 0.4724888 | 1.7149690 | 1.2235452 | -4.5399447 | 0.2142523 |
| ENSG00000162585 | 0.8028578 | 0.5415466 | 7.379363 | 7.267964 | 0.0065576 | 0.4256915 | ENSG00000162585 | FAAP20 | FA core complex associated protein 20 | 1 | 2184461 | 2212720 | protein_coding | HGNC:26428 | 6.2563806 | 6.9619166 | 6.8800312 | 7.5149372 | 7.0369899 | 7.1231445 | 7.0072898 | 7.1770548 | 7.4949569 | 7.3640358 | 7.2276417 | 7.2974501 | 7.2407894 | 7.0084880 |
| ENSG00000171720 | -1.3628714 | -2.1669777 | 3.227832 | 7.195552 | 0.0065811 | 0.4256915 | ENSG00000171720 | HDAC3 | histone deacetylase 3 | 5 | 141620876 | 141636849 | protein_coding | HGNC:4854 | 3.5262597 | 3.7667446 | 4.6682561 | 3.6053975 | 3.9412570 | 3.1524478 | 2.5874639 | 1.6259867 | 2.6014555 | 1.6235579 | -0.0083485 | 1.0270018 | 2.3377996 | 3.8577117 |
| ENSG00000133026 | 0.7400233 | 0.2797858 | 7.558331 | 7.239989 | 0.0066493 | 0.4265028 | ENSG00000133026 | MYH10 | myosin heavy chain 10 | 17 | 8474207 | 8631376 | protein_coding | HGNC:7568 | 5.5827110 | 4.9833371 | 5.4264651 | 5.2539714 | 6.5520555 | 4.7887412 | 5.1295964 | 5.9738931 | 6.2091596 | 5.0370949 | 6.1608898 | 5.7057562 | 5.8400001 | 5.5556082 |
| ENSG00000168298 | -1.0179432 | -1.3551826 | 5.573701 | 7.235733 | 0.0066799 | 0.4265028 | ENSG00000168298 | H1-4 | H1.4 linker histone, cluster member | 6 | 26156329 | 26157115 | protein_coding | HGNC:4718 | 7.5191698 | 6.6812810 | 7.5073302 | 7.7694579 | 7.1948763 | 7.8847182 | 7.1135230 | 5.5937803 | 5.4785707 | 6.0483337 | 6.0609441 | 6.0546527 | 6.2690384 | 7.4771572 |
| ENSG00000184640 | -1.0835158 | -0.5495722 | 7.431360 | 7.207340 | 0.0067584 | 0.4265028 | ENSG00000184640 | SEPTIN9 | septin 9 | 17 | 77280569 | 77500596 | protein_coding | HGNC:7323 | 5.8616887 | 6.7274947 | 6.8498020 | 7.3088644 | 6.1799707 | 7.1201540 | 5.8215316 | 6.6204704 | 5.0851365 | 5.9620075 | 5.8676343 | 5.9155924 | 5.9764425 | 6.7585340 |
| ENSG00000226430 | 2.9359569 | 2.4459895 | 2.842761 | 6.397416 | 0.0067862 | 0.4265028 | ENSG00000226430 | USP17L7 | ubiquitin specific peptidase 17 like family member 7 | 8 | 12132417 | 12134099 | protein_coding | HGNC:37180 | -13.2877124 | 0.9706534 | -13.2877124 | 1.3919772 | 1.4795617 | -13.2877124 | 4.0925996 | 2.1390991 | 1.8888851 | 3.5438335 | -0.0836334 | 2.6560854 | 3.0686132 | 0.2972983 |
| ENSG00000145242 | 6.0688495 | 8.7438088 | 3.254913 | 8.872320 | 0.0068144 | 0.4265028 | ENSG00000145242 | EPHA5 | EPH receptor A5 | 4 | 65319563 | 65670495 | protein_coding | HGNC:3389 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -2.8502620 | -1.1615435 | 1.5718918 | -13.2877124 | 4.1410524 | 3.1410606 | 0.2463667 | -13.2877124 |
| ENSG00000183715 | 2.2878345 | -5.0190078 | 2.703412 | 6.728700 | 0.0069242 | 0.4265028 | ENSG00000183715 | OPCML | opioid binding protein/cell adhesion molecule like | 11 | 132414977 | 133532501 | protein_coding | HGNC:8143 | -3.0319048 | 3.1808391 | -13.2877124 | -13.2877124 | 2.7313066 | 0.4130492 | 1.3140607 | -1.4795687 | 4.6681413 | -13.2877124 | -13.2877124 | -13.2877124 | 3.2362063 | 1.5162568 |
| ENSG00000122257 | -1.0899131 | -0.8651591 | 4.215899 | 7.178444 | 0.0069655 | 0.4265028 | ENSG00000122257 | RBBP6 | RB binding protein 6, ubiquitin ligase | 16 | 24537693 | 24572863 | protein_coding | HGNC:9889 | 1.9986512 | 3.5626047 | 3.5464109 | 2.7905615 | 3.1484656 | 3.5305808 | 0.7236442 | 2.2043508 | 3.3240920 | 0.7394187 | 3.4657498 | 2.6687752 | 2.4396258 | 3.1921287 |
| ENSG00000170558 | 1.3457711 | 0.7246324 | 6.729755 | 7.148093 | 0.0069681 | 0.4265028 | ENSG00000170558 | CDH2 | cadherin 2 | 18 | 27932879 | 28177946 | protein_coding | HGNC:1759 | 4.9587987 | 4.8754114 | 3.8112640 | 4.2881904 | 4.6055832 | 4.8728380 | 5.4383900 | 5.1327771 | 6.4996771 | 4.4918282 | 5.8653733 | 5.3362398 | 5.8153807 | 4.6212994 |
| ENSG00000165028 | -1.8601622 | 1.3067816 | 2.420700 | 6.449505 | 0.0069993 | 0.4265028 | ENSG00000165028 | NIPSNAP3B | nipsnap homolog 3B | 9 | 104764129 | 104777764 | protein_coding | HGNC:23641 | -0.4034522 | -0.0012716 | -1.3077299 | -0.5297828 | -0.1061548 | 1.4851733 | -1.9558717 | -1.2993330 | -13.2877124 | 1.6759749 | 0.4945487 | 1.2029605 | -2.1753185 | 0.1332018 |
| ENSG00000159261 | 5.1354703 | 5.0366918 | 2.265323 | 8.044178 | 0.0071117 | 0.4265028 | ENSG00000159261 | CLDN14 | claudin 14 | 21 | 36460621 | 36576569 | protein_coding | HGNC:2035 | -13.2877124 | -13.2877124 | -13.2877124 | 0.2829403 | -13.2877124 | -13.2877124 | 0.4982723 | 1.7210366 | 3.7367515 | 2.4107302 | 3.1157536 | 2.8058870 | 2.5882136 | -2.3014294 |
| ENSG00000106366 | 1.5094843 | 0.4822335 | 8.712346 | 7.100275 | 0.0071309 | 0.4265028 | ENSG00000106366 | SERPINE1 | serpin family E member 1 | 7 | 101127104 | 101139247 | protein_coding | HGNC:8583 | 7.7849475 | 7.0049538 | 6.4210866 | 6.5848604 | 6.6257565 | 6.6715816 | 9.0001549 | 6.6263152 | 8.4243027 | 7.3694570 | 7.4501266 | 7.4103555 | 8.3134558 | 6.9294892 |
| ENSG00000125991 | -0.8501681 | -0.4164521 | 6.015605 | 7.101270 | 0.0071356 | 0.4265028 | ENSG00000125991 | ERGIC3 | ERGIC and golgi 3 | 20 | 35542038 | 35557634 | protein_coding | HGNC:15927 | 6.2273937 | 6.9763335 | 6.6375751 | 6.9739478 | 6.6493815 | 6.4804873 | 5.3255096 | 6.1340790 | 5.6219913 | 6.1147063 | 6.1266689 | 6.1206999 | 5.7331775 | 6.6813454 |
| ENSG00000095303 | 1.8251682 | 0.2835348 | 4.427071 | 7.107149 | 0.0071617 | 0.4265028 | ENSG00000095303 | PTGS1 | prostaglandin-endoperoxide synthase 1 | 9 | 122370530 | 122395703 | protein_coding | HGNC:9604 | 2.5962148 | 2.5982732 | 2.5656661 | 2.9553666 | 1.3233637 | 2.6313732 | 4.3835571 | 3.0392404 | 4.7538653 | 2.4739996 | 2.0033932 | 2.2578009 | 4.2243060 | 2.5226338 |
| ENSG00000178752 | 1.5354165 | 1.2211331 | 5.041416 | 7.107543 | 0.0071763 | 0.4265028 | ENSG00000178752 | ERFE | erythroferrone | 2 | 238158970 | 238168900 | protein_coding | HGNC:26727 | 3.0442093 | 4.1643251 | 3.7754775 | 4.9554533 | 3.6390153 | 6.0965999 | 5.0360144 | 4.8139351 | 6.4485176 | 4.2059633 | 5.9097725 | 5.2960036 | 5.6271562 | 4.6609748 |
| ENSG00000006016 | 1.4510812 | 0.0839045 | 6.861955 | 7.086823 | 0.0071847 | 0.4265028 | ENSG00000006016 | CRLF1 | cytokine receptor like factor 1 | 19 | 18572220 | 18607741 | protein_coding | HGNC:2364 | 8.5199620 | 6.9315489 | 7.1976716 | 7.3908015 | 7.1088812 | 6.3543411 | 8.4551970 | 7.2990018 | 10.5453616 | 7.2845551 | 7.6901307 | 7.5015482 | 9.3828812 | 7.4145068 |
| ENSG00000204381 | -1.4500560 | -1.1331944 | 5.733347 | 7.084033 | 0.0072055 | 0.4265028 | ENSG00000204381 | LAYN | layilin | 11 | 111540280 | 111561745 | protein_coding | HGNC:29471 | 5.6336318 | 5.8676210 | 5.5926061 | 5.9625848 | 6.5216382 | 6.6817549 | 4.0212806 | 5.4345579 | 2.9656022 | 4.9394198 | 4.5565586 | 4.7606526 | 4.4875114 | 6.1057041 |
| ENSG00000006015 | 2.5210300 | -0.3117054 | 6.270047 | 7.087173 | 0.0072117 | 0.4265028 | ENSG00000006015 | REX1BD | required for excision 1-B domain containing | 19 | 18588685 | 18592337 | protein_coding | HGNC:26098 | 6.2889878 | 5.3832104 | 6.2670900 | 6.2790915 | 3.9463241 | 4.0092842 | 5.6507698 | 5.6538646 | 8.3417895 | 4.1910150 | 5.9917706 | 5.3558099 | 7.1464384 | 5.6730122 |
| ENSG00000102226 | -1.1473185 | -0.5315773 | 4.647717 | 7.092162 | 0.0072313 | 0.4265028 | ENSG00000102226 | USP11 | ubiquitin specific peptidase 11 | X | 47232866 | 47248328 | protein_coding | HGNC:12609 | 3.7576051 | 3.6476059 | 4.7943506 | 5.1981090 | 3.2737195 | 4.2865618 | 2.3491756 | 4.2797031 | 2.0781733 | 3.8140913 | 2.8336999 | 3.4056197 | 3.2600845 | 4.3183647 |
| ENSG00000134283 | 0.8999047 | 1.9309307 | 5.845172 | 7.067166 | 0.0072850 | 0.4265028 | ENSG00000134283 | PPHLN1 | periphilin 1 | 12 | 42238447 | 42459715 | protein_coding | HGNC:19369 | 5.7916098 | 5.6664856 | 4.8011242 | 3.5669292 | 6.2813763 | 4.2583186 | 5.2871388 | 5.3899414 | 6.7133206 | 6.1328104 | 7.6849287 | 7.1082476 | 5.9535025 | 5.3388576 |
| ENSG00000152661 | -0.3688700 | 1.2704411 | 6.312498 | 7.038561 | 0.0073658 | 0.4265028 | ENSG00000152661 | GJA1 | gap junction protein alpha 1 | 6 | 121435595 | 121449727 | protein_coding | HGNC:4274 | 4.1366146 | 6.1380310 | 4.8982412 | 4.6295797 | 4.7279230 | 4.7558616 | 3.5052888 | 4.9166989 | 4.6509448 | 5.6738252 | 6.6504089 | 6.2432191 | 4.4742855 | 5.0305400 |
| ENSG00000120594 | 3.1160202 | 3.8634548 | 3.245209 | 6.237388 | 0.0073783 | 0.4265028 | ENSG00000120594 | PLXDC2 | plexin domain containing 2 | 10 | 19816239 | 20289856 | protein_coding | HGNC:21013 | 1.5506485 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -3.1406856 | -0.8376224 | 3.4601989 | 2.3699656 | 2.9101557 | 2.6651973 | 1.9608580 | -1.0340678 |
| ENSG00000165323 | 1.3129057 | -5.4525261 | 2.487055 | 6.827026 | 0.0073869 | 0.4265028 | ENSG00000165323 | FAT3 | FAT atypical cadherin 3 | 11 | 92224818 | 92896473 | protein_coding | HGNC:23112 | 2.3382960 | -0.7058080 | -13.2877124 | -1.0619326 | -4.2558596 | -3.1256106 | -1.0594799 | -1.3656595 | 0.8554763 | -13.2877124 | -13.2877124 | -13.2877124 | -0.1642279 | 0.0740848 |
| ENSG00000232070 | 2.5598275 | 3.1393825 | 2.169020 | 6.255677 | 0.0073892 | 0.4265028 | ENSG00000232070 | TMEM253 | transmembrane protein 253 | 14 | 21098811 | 21103724 | protein_coding | HGNC:32545 | 0.7260421 | 0.6407903 | -13.2877124 | 2.8667618 | -13.2877124 | -13.2877124 | 1.4882240 | 3.4633121 | 2.1619289 | 3.8376479 | 3.1032621 | 3.5166878 | 2.6096122 | 0.8084312 |
| ENSG00000138650 | -3.7846014 | -2.8550648 | 2.660374 | 6.404536 | 0.0074078 | 0.4265028 | ENSG00000138650 | PCDH10 | protocadherin 10 | 4 | 133149294 | 133208606 | protein_coding | HGNC:13404 | 1.3880611 | -13.2877124 | 2.0219945 | 1.9350508 | -0.2638905 | 0.9720235 | -13.2877124 | -13.2877124 | -1.9283417 | -13.2877124 | -0.3811412 | -1.3809533 | -3.5122063 | 1.1480839 |
| ENSG00000112139 | 1.5300900 | 0.3999563 | 3.433052 | 6.915832 | 0.0074347 | 0.4265028 | ENSG00000112139 | MDGA1 | MAM domain containing glycosylphosphatidylinositol anchor 1 | 6 | 37630679 | 37699306 | protein_coding | HGNC:19267 | 0.5625497 | -0.3222365 | 0.1813545 | 1.9242732 | -0.1054003 | 1.5060885 | 1.6905369 | 5.2288702 | 1.1560898 | 0.7534437 | -0.8412002 | 0.1660662 | 3.8398801 | 0.8713240 |
| ENSG00000137337 | -6.9230830 | -0.2968394 | 2.952523 | 7.435849 | 0.0075426 | 0.4296542 | ENSG00000137337 | MDC1 | mediator of DNA damage checkpoint 1 | 6 | 30699807 | 30717447 | protein_coding | HGNC:21163 | 1.5742299 | 2.0171843 | 0.9326886 | -13.2877124 | -13.2877124 | 0.9363918 | -13.2877124 | -13.2877124 | -13.2877124 | 0.7706143 | 0.5717448 | 0.6746035 | -13.2877124 | 0.8544561 |
| ENSG00000274587 | -3.0189163 | 0.5678190 | 2.786919 | 6.439688 | 0.0075574 | 0.4296542 | ENSG00000274587 | LILRB3 | leukocyte immunoglobulin like receptor B3 | HSCHR19_4_CTG3_1 | 191638 | 198073 | protein_coding | HGNC:6607 | 3.3065449 | 4.4163330 | -0.2613031 | 1.8615259 | 4.6858800 | 3.7896256 | 2.2391304 | -13.2877124 | 2.4942986 | 3.7618001 | 4.4420218 | 4.1416351 | 1.7873999 | 3.6492825 |
| ENSG00000026025 | -1.1297256 | -1.3756436 | 12.516238 | 6.961379 | 0.0076501 | 0.4297146 | ENSG00000026025 | VIM | vimentin | 10 | 17228241 | 17237593 | protein_coding | HGNC:12692 | 12.2291330 | 12.2287952 | 13.2074809 | 13.7995626 | 12.2720874 | 12.5744841 | 11.9997199 | 11.6833494 | 10.4596181 | 11.7011385 | 11.0830564 | 11.4249473 | 11.5170454 | 12.8521550 |
| ENSG00000280787 | -5.7172955 | 1.3036283 | 2.506583 | 7.031979 | 0.0077324 | 0.4297146 | ENSG00000280787 | HERC2P2 | HSCHR15_3_CTG3 | 139181 | 224046 | transcribed_unprocessed_pseudogene | HGNC:4870 | 1.1318397 | -13.2877124 | -0.5080566 | 1.1368699 | -13.2877124 | 1.4542654 | -13.2877124 | -13.2877124 | -13.2877124 | 1.6900076 | 2.5266911 | 2.1681719 | -13.2877124 | 0.3847782 | |
| ENSG00000102743 | 1.5253721 | 1.0159650 | 3.446000 | 6.818759 | 0.0077356 | 0.4297146 | ENSG00000102743 | SLC25A15 | solute carrier family 25 member 15 | 13 | 40789412 | 40812460 | protein_coding | HGNC:10985 | 0.6535746 | 2.0139746 | 0.8490225 | 0.0438764 | 2.9759458 | 1.8345709 | 3.1571644 | 4.0631357 | 3.5593007 | 2.8184293 | 2.5576895 | 2.6939419 | 3.6409651 | 1.7281765 |
| ENSG00000088538 | 1.1576220 | 0.0741137 | 4.214153 | 6.956118 | 0.0077524 | 0.4297146 | ENSG00000088538 | DOCK3 | dedicator of cytokinesis 3 | 3 | 50674927 | 51384198 | protein_coding | HGNC:2989 | 1.3946722 | 0.7016378 | 1.2269000 | 0.5380057 | 0.7408352 | 0.7473324 | 2.3285668 | 1.6636680 | 1.9460919 | 1.4595874 | 0.3941695 | 1.0230715 | 2.0053479 | 0.9257549 |
| ENSG00000204176 | 1.5370010 | 2.1312308 | 5.779967 | 6.940318 | 0.0077850 | 0.4297146 | ENSG00000204176 | SYT15 | synaptotagmin 15 | 10 | 46578217 | 46594173 | protein_coding | HGNC:17167 | 4.4213444 | 2.9687497 | 1.5387264 | 4.4117573 | 3.2310233 | 1.7038834 | 1.3300736 | 4.6438890 | 5.8073863 | 3.9808410 | 6.6747113 | 5.8820399 | 4.7990173 | 3.4614578 |
| ENSG00000232804 | 1.8094490 | -6.9208076 | 4.038745 | 7.111525 | 0.0078276 | 0.4297146 | ENSG00000232804 | HSPA1B | heat shock protein family A (Hsp70) member 1B | HSCHR6_MHC_APD_CTG1 | 3160360 | 3162874 | protein_coding | HGNC:5233 | -13.2877124 | -13.2877124 | 4.0643262 | 3.9876457 | -13.2877124 | 3.1088101 | 3.7988398 | 5.1229264 | 4.2061499 | -13.2877124 | -13.2877124 | -13.2877124 | 4.4858867 | 2.7803145 |
| ENSG00000184349 | -5.8376322 | -5.8376322 | 1.903462 | 7.280288 | 0.0078355 | 0.4297146 | ENSG00000184349 | EFNA5 | ephrin A5 | 5 | 107376894 | 107670937 | protein_coding | HGNC:3225 | -13.2877124 | 1.7727974 | 3.4191136 | 1.2340978 | 1.4278502 | 0.8563898 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 1.8051137 |
| ENSG00000168077 | 1.2153284 | -0.0786396 | 6.645360 | 6.908020 | 0.0078681 | 0.4297146 | ENSG00000168077 | SCARA3 | scavenger receptor class A member 3 | 8 | 27633868 | 27676776 | protein_coding | HGNC:19000 | 4.6229395 | 4.3765041 | 5.0751678 | 5.5006291 | 4.5837596 | 4.6210150 | 6.3497622 | 4.5580906 | 6.2131651 | 5.2089651 | 4.0186700 | 4.7332426 | 5.9013190 | 4.8495370 |
| ENSG00000276068 | 1.0994517 | 0.7453094 | 6.894284 | 6.888715 | 0.0079442 | 0.4297146 | ENSG00000276068 | NAIP | NLR family apoptosis inhibitory protein | HSCHR5_1_CTG1_1 | 516878 | 573494 | protein_coding | HGNC:7634 | 4.4581066 | 4.6942930 | 4.6359366 | 4.2502647 | 3.3339197 | 3.9676921 | 4.4675501 | 5.8417520 | 5.1507333 | 4.9632512 | 5.0863200 | 5.0260976 | 5.2605229 | 4.2914606 |
| ENSG00000248769 | -2.6133438 | -6.4230709 | 2.337213 | 6.539563 | 0.0079845 | 0.4297146 | ENSG00000248769 | 5 | 69653248 | 69654334 | unprocessed_pseudogene | 4.2113713 | 4.0095048 | 3.1960178 | 1.7113460 | 3.6150424 | -13.2877124 | -13.2877124 | 2.2831860 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 0.6982825 | 3.3055379 | |||
| ENSG00000278839 | -3.6659388 | -0.3425032 | 2.148773 | 6.555619 | 0.0080072 | 0.4297146 | ENSG00000278839 | SERF1B | small EDRK-rich factor 1A | HSCHR5_2_CTG1_1 | 492256 | 510143 | protein_coding | HGNC:10756 | 4.1278113 | 4.3821706 | 3.0488315 | 2.5677365 | 3.6457702 | 4.2909249 | -13.2877124 | -13.2877124 | -0.5820908 | 3.0700765 | 3.7466132 | 3.4476436 | -2.1666212 | 3.8181443 |
| ENSG00000196843 | -1.7075895 | -1.7696459 | 2.997252 | 6.747973 | 0.0080483 | 0.4297146 | ENSG00000196843 | ARID5A | AT-rich interaction domain 5A | 2 | 96536743 | 96552638 | protein_coding | HGNC:17361 | 3.0625148 | 2.2890341 | 3.2133255 | 3.2999056 | 1.7201138 | 2.8416093 | 1.4122244 | -0.4212390 | 0.1787771 | 0.9380253 | 1.1127622 | 1.0280379 | 0.5977867 | 2.8355116 |
| ENSG00000196611 | -4.2092645 | -1.2505617 | 3.073717 | 6.402907 | 0.0080950 | 0.4297146 | ENSG00000196611 | MMP1 | matrix metallopeptidase 1 | 11 | 102789401 | 102798160 | protein_coding | HGNC:7155 | 4.6635526 | 3.8688952 | 2.0647311 | 1.6980384 | 1.2066463 | -13.2877124 | -1.3239096 | -0.2537354 | -13.2877124 | -0.2162014 | 2.8657880 | 2.0268298 | -1.2766330 | 3.0499219 |
| ENSG00000100890 | -1.2852944 | -1.5760294 | 3.535559 | 6.867049 | 0.0080994 | 0.4297146 | ENSG00000100890 | PRORP | protein only RNase P catalytic subunit | 14 | 35121846 | 35277622 | protein_coding | HGNC:19958 | 4.2765649 | 3.4232419 | 3.9731890 | 3.3428173 | 4.7637235 | 4.8451790 | 3.1797333 | 3.0368170 | 1.2722090 | 2.1186322 | 2.2439597 | 2.1826564 | 2.7139518 | 4.2207084 |
| ENSG00000141448 | 2.2595272 | 1.9728584 | 3.345818 | 6.493790 | 0.0081182 | 0.4297146 | ENSG00000141448 | GATA6 | GATA binding protein 6 | 18 | 22169589 | 22202528 | protein_coding | HGNC:4174 | 1.7530615 | 1.7533829 | -0.7357807 | -13.2877124 | -0.8561390 | -13.2877124 | 1.7847561 | 1.7737462 | 3.4019077 | 1.8933447 | 2.7036268 | 2.3546397 | 2.5389553 | 0.3960378 |
| ENSG00000004059 | -1.0613968 | -0.3278007 | 5.112347 | 6.836693 | 0.0081945 | 0.4297146 | ENSG00000004059 | ARF5 | ADP ribosylation factor 5 | 7 | 127588386 | 127591700 | protein_coding | HGNC:658 | 5.9995508 | 6.3404334 | 5.7271510 | 6.8018590 | 6.1751679 | 6.1188511 | 4.8567331 | 5.4545045 | 4.5036015 | 5.9060071 | 5.6738497 | 5.7945931 | 4.9926008 | 6.2330333 |
| ENSG00000134697 | -1.0897969 | -1.2488784 | 3.783674 | 6.845893 | 0.0082577 | 0.4297146 | ENSG00000134697 | GNL2 | G protein nucleolar 2 | 1 | 37566816 | 37595937 | protein_coding | HGNC:29925 | 3.7475118 | 4.4633435 | 4.3171119 | 3.8202301 | 3.1639271 | 3.6068515 | 1.8389421 | 4.6788015 | 2.1719856 | 1.6639575 | 5.2242487 | 4.3416385 | 3.4895802 | 3.9180026 |
| ENSG00000118596 | -1.4865194 | -0.7578093 | 4.384714 | 6.835321 | 0.0082660 | 0.4297146 | ENSG00000118596 | SLC16A7 | solute carrier family 16 member 7 | 12 | 59596029 | 59789855 | protein_coding | HGNC:10928 | 3.6042107 | 2.2946846 | 2.0901488 | 1.8022768 | 2.9654605 | 4.0031194 | 2.1713148 | 1.8912177 | -0.4104282 | 2.6962431 | 3.0701257 | 2.8952623 | 1.5795374 | 3.0196617 |
| ENSG00000075945 | -0.2953874 | -2.2605063 | 2.822423 | 6.605228 | 0.0082838 | 0.4297146 | ENSG00000075945 | KIFAP3 | kinesin associated protein 3 | 1 | 169921326 | 170085208 | protein_coding | HGNC:17060 | 1.7050078 | 1.8266534 | 2.1709195 | 2.2914155 | 2.6384826 | 1.7866566 | 1.6105158 | 1.4114723 | 1.4259029 | -0.8729875 | 0.0183023 | -0.3595808 | 1.4855165 | 2.1089600 |
| ENSG00000137571 | 2.7218199 | 1.3123445 | 4.370948 | 6.728323 | 0.0083510 | 0.4297146 | ENSG00000137571 | SLCO5A1 | solute carrier organic anion transporter family member 5A1 | 8 | 69667046 | 69834978 | protein_coding | HGNC:19046 | 0.6370398 | 0.3734689 | -13.2877124 | -13.2877124 | 0.6541541 | 0.9528151 | 3.3077125 | 2.3452842 | 2.0482006 | 2.3349009 | -13.2877124 | 1.3349292 | 2.6720068 | 0.0840956 |
| ENSG00000166979 | -3.0865057 | -0.6921047 | 2.597265 | 6.277644 | 0.0083555 | 0.4297146 | ENSG00000166979 | EVA1C | eva-1 homolog C | 21 | 32412006 | 32515397 | protein_coding | HGNC:13239 | 3.8107568 | 0.0241452 | 5.0346228 | 3.4722298 | 3.3141818 | 3.8594475 | 0.9873784 | -0.6382631 | -13.2877124 | 1.8348443 | 2.9737082 | 2.5138515 | -0.1925544 | 3.7967775 |
| ENSG00000080298 | -4.0495830 | 0.3214288 | 2.244722 | 6.636071 | 0.0083570 | 0.4297146 | ENSG00000080298 | RFX3 | regulatory factor X3 | 9 | 3218297 | 3526004 | protein_coding | HGNC:9984 | -0.3231206 | 2.4631453 | -0.4908879 | -1.2990064 | -1.4609415 | 2.3243628 | -13.2877124 | -13.2877124 | -3.6365889 | -1.2924222 | 3.7503192 | 2.7934367 | -5.2179673 | 1.0934709 |
| ENSG00000183770 | -4.0509378 | -1.2202556 | 2.613313 | 6.454229 | 0.0083939 | 0.4297146 | ENSG00000183770 | FOXL2 | forkhead box L2 | 3 | 138944224 | 138947137 | protein_coding | HGNC:1092 | 1.9723250 | 1.8886692 | 0.1052570 | -13.2877124 | 2.3768449 | 3.5822974 | -1.9594302 | -1.8883490 | -13.2877124 | -0.2664825 | 1.3220585 | 0.7362022 | -2.5081407 | 2.1085004 |
| ENSG00000124785 | -2.1437235 | -2.0273713 | 5.637982 | 6.786870 | 0.0084011 | 0.4297146 | ENSG00000124785 | NRN1 | neuritin 1 | 6 | 5997999 | 6007605 | protein_coding | HGNC:17972 | 3.1905736 | 6.6449925 | 7.2378266 | 7.2981275 | 5.0737074 | 5.5945300 | 3.1177482 | 4.9645718 | 2.7923577 | 3.9122379 | 4.4783131 | 4.2228633 | 3.9644504 | 6.3794560 |
| ENSG00000159200 | 1.3916113 | 1.1483917 | 4.753124 | 6.796569 | 0.0084058 | 0.4297146 | ENSG00000159200 | RCAN1 | regulator of calcineurin 1 | 21 | 34513142 | 34615113 | protein_coding | HGNC:3040 | 2.7484567 | 3.3762252 | 3.7428261 | 4.1731254 | 2.6836340 | 3.6166260 | 5.2350902 | 2.8986758 | 4.5755076 | 4.0982412 | 4.6779384 | 4.4170126 | 4.5228090 | 3.4859008 |
| ENSG00000232859 | -1.0219039 | 2.0298841 | 2.121655 | 5.914388 | 0.0085147 | 0.4311871 | ENSG00000232859 | LYRM9 | LYR motif containing 9 | 17 | 27878314 | 27894752 | protein_coding | HGNC:27314 | -0.8252357 | 1.6750585 | -13.2877124 | 2.7034644 | 0.0272447 | 3.4049067 | 0.5260227 | 2.5931185 | -13.2877124 | 4.2384652 | 3.8049179 | 4.0379164 | 1.3169318 | 1.8667462 |
| ENSG00000173992 | -1.1717090 | -1.2815638 | 3.940267 | 6.783377 | 0.0085256 | 0.4311871 | ENSG00000173992 | CCS | copper chaperone for superoxide dismutase | 11 | 66593153 | 66606019 | protein_coding | HGNC:1613 | 4.5006228 | 4.2123988 | 5.4826471 | 5.6172938 | 4.8895913 | 5.3879755 | 3.6762055 | 3.7016969 | 3.7626643 | 4.1943359 | 3.6895621 | 3.9639133 | 3.7139795 | 5.1049853 |
| ENSG00000228299 | 7.9673835 | 6.4707930 | 3.093787 | 8.260000 | 0.0085367 | 0.4311871 | ENSG00000228299 | HLA-C | major histocompatibility complex, class I, C | HSCHR6_MHC_DBB_CTG1 | 2526549 | 2529920 | protein_coding | HGNC:4933 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 1.3659187 | 3.9110389 | 5.5684673 | 4.7066754 | -13.2877124 | 3.7066808 | 4.4390672 | -13.2877124 |
| ENSG00000274744 | 2.7418128 | 2.5370733 | 2.131324 | 6.011494 | 0.0085721 | 0.4312593 | ENSG00000274744 | NA | NA | NA | NA | NA | NA | NA | -13.2877124 | -0.0794780 | -13.2877124 | 0.8708949 | -1.2641347 | 1.9257917 | 1.9440038 | 2.4002218 | 2.5883229 | 1.1891800 | 2.8955254 | 2.2811611 | 2.3353838 | 0.2205776 |
| ENSG00000223620 | -1.6952726 | -5.5516343 | 3.572557 | 6.681333 | 0.0086387 | 0.4328896 | ENSG00000223620 | RBM48P1 | 4 | 126563509 | 126564776 | processed_pseudogene | HGNC:44054 | 0.9418448 | 4.3796761 | 6.1706506 | 5.0667125 | 3.9410547 | 4.6681579 | 2.7056705 | 4.0957716 | -13.2877124 | -13.2877124 | -0.0076724 | -1.0075274 | 2.9770905 | 4.8165366 | |
| ENSG00000179886 | 0.8200205 | -0.5188313 | 4.652804 | 6.730484 | 0.0087002 | 0.4329466 | ENSG00000179886 | TIGD5 | tigger transposable element derived 5 | 8 | 143597831 | 143603224 | protein_coding | HGNC:18336 | 1.7774892 | 3.0161796 | 2.7051722 | 2.8356731 | 1.8633256 | 2.0433235 | 3.2769647 | 3.3086460 | 2.7872346 | 2.1028358 | 1.6900827 | 1.9111704 | 3.1432060 | 2.4567633 |
| ENSG00000197429 | 1.8946705 | 1.7744062 | 2.786084 | 6.203762 | 0.0087091 | 0.4329466 | ENSG00000197429 | IPP | intracisternal A particle-promoted polypeptide | 1 | 45694324 | 45750653 | protein_coding | HGNC:6108 | 0.4891277 | 0.0836396 | 1.2727190 | 2.0477998 | 1.2720859 | -13.2877124 | 3.7188070 | 1.5916067 | 2.3428884 | 3.4335540 | 1.6062939 | 2.7917243 | 2.8246717 | 0.9297153 |
| ENSG00000214279 | 4.3109479 | 4.6220837 | 1.810990 | 7.455389 | 0.0087643 | 0.4329466 | ENSG00000214279 | SCART1 | scavenger receptor family member expressed on T cells 1 | 10 | 133453928 | 133523558 | protein_coding | HGNC:32411 | -13.2877124 | -2.0779483 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 0.9314660 | -0.5805733 | -0.6214218 | 0.3200075 | 1.0409724 | 0.7250653 | 0.1047576 | -4.6598685 |
| ENSG00000157456 | 1.1506576 | 1.2409512 | 6.519573 | 6.693693 | 0.0087901 | 0.4329466 | ENSG00000157456 | CCNB2 | cyclin B2 | 15 | 59105126 | 59125045 | protein_coding | HGNC:1580 | 4.8952731 | 4.9065017 | 4.4982895 | 5.2181243 | 5.6589538 | 5.7773506 | 4.9290461 | 6.4831820 | 6.5087305 | 6.3474777 | 6.4176689 | 6.3830001 | 6.1360273 | 5.2284874 |
| ENSG00000127329 | 2.8656975 | 0.1416554 | 2.731353 | 5.998134 | 0.0088373 | 0.4329466 | ENSG00000127329 | PTPRB | protein tyrosine phosphatase receptor type B | 12 | 70515870 | 70637440 | protein_coding | HGNC:9665 | 0.9041288 | -13.2877124 | -13.2877124 | -13.2877124 | -2.0157534 | -13.2877124 | 1.7732541 | -2.0741160 | 1.6971853 | -1.9247330 | -0.0999923 | -0.7412676 | 1.2012991 | -1.5015114 |
| ENSG00000285154 | 2.4495613 | 0.7894529 | 3.383309 | 6.386980 | 0.0088902 | 0.4329466 | ENSG00000285154 | olfactory receptor 2A1/2A42 | HSCHR7_3_CTG4_4 | 369356 | 370276 | protein_coding | 4.3055199 | 3.1005683 | -13.2877124 | -13.2877124 | 1.2870591 | 4.0417712 | 4.8985301 | 5.8542872 | 4.9175237 | 4.6181635 | 0.2650948 | 3.6870851 | 5.2964607 | 2.9776439 | ||
| ENSG00000276886 | -1.0882100 | -0.7206627 | 9.733247 | 6.656731 | 0.0089482 | 0.4329466 | ENSG00000276886 | GREM1 | gremlin 1, DAN family BMP antagonist | HSCHR15_4_CTG8 | 4932598 | 4949251 | protein_coding | HGNC:2001 | 8.3535434 | 7.5572568 | 8.4493017 | 8.8000496 | 8.7423221 | 9.1366310 | 7.7905205 | 7.0875386 | 7.0271949 | 7.4665295 | 8.1268415 | 7.8341379 | 7.3453139 | 8.5836003 |
| ENSG00000204348 | 2.5944632 | 0.5781839 | 3.879435 | 6.514783 | 0.0089597 | 0.4329466 | ENSG00000204348 | DXO | decapping exoribonuclease | 6 | 31969810 | 31972290 | protein_coding | HGNC:2992 | -13.2877124 | 1.7974978 | 1.1851923 | -13.2877124 | 3.7066805 | 4.1682134 | 5.5595614 | 5.4598965 | 2.8097980 | 3.4409932 | 1.8276134 | 2.8489788 | 5.0325170 | 2.6160958 |
| ENSG00000220884 | 1.4185573 | 1.8155706 | 3.694329 | 6.562666 | 0.0089750 | 0.4329466 | ENSG00000220884 | MESTP1 | 6 | 128928995 | 128929988 | processed_pseudogene | HGNC:29660 | 1.7277571 | 4.1441358 | 4.0675018 | 2.9497854 | 3.2492232 | 3.1323921 | 4.6061557 | 5.3655521 | 4.0797717 | 4.0118320 | 6.0005754 | 5.3247620 | 4.7812333 | 3.4096937 | |
| ENSG00000120875 | -4.2879240 | -0.7022859 | 2.256824 | 6.544114 | 0.0089813 | 0.4329466 | ENSG00000120875 | DUSP4 | dual specificity phosphatase 4 | 8 | 29333064 | 29350684 | protein_coding | HGNC:3070 | 1.2556790 | -0.0029114 | -2.8936142 | 0.7903767 | 1.6765274 | 1.2611493 | -13.2877124 | -1.9126458 | -13.2877124 | 0.4893343 | -0.3550067 | 0.1280710 | -3.4965223 | 0.8537712 |
| ENSG00000180340 | 0.4463139 | 1.6530780 | 5.224977 | 6.649921 | 0.0090446 | 0.4343440 | ENSG00000180340 | FZD2 | frizzled class receptor 2 | 17 | 44557484 | 44561262 | protein_coding | HGNC:4040 | 3.5485681 | 4.5425058 | 4.7975281 | 4.3893683 | 3.8464234 | 2.5193492 | 3.5151803 | 5.0744422 | 4.4280710 | 4.8784330 | 6.3752554 | 5.8128378 | 4.4736752 | 4.1139455 |
| ENSG00000142794 | 0.4609106 | -5.7259693 | 2.363369 | 6.540052 | 0.0091294 | 0.4350072 | ENSG00000142794 | NBPF3 | NBPF member 3 | 1 | 21440128 | 21485005 | protein_coding | HGNC:25076 | 0.7502206 | 1.2000077 | 1.4432496 | 2.1355533 | -0.0746629 | -13.2877124 | 2.8674913 | 1.8055814 | -0.2030086 | -13.2877124 | -13.2877124 | -13.2877124 | 1.9588286 | 1.0051010 |
| ENSG00000270728 | -1.8661523 | -2.0992212 | 2.447685 | 6.215864 | 0.0091624 | 0.4350072 | ENSG00000270728 | 1 | 19297080 | 19297903 | transcribed_processed_pseudogene | 5.9686025 | 4.8779778 | 3.8173691 | 3.9216520 | 4.9512447 | 5.8583326 | 2.3982168 | 3.4571552 | 3.0737233 | 3.0848878 | 2.7000006 | 2.9052415 | 3.0399339 | 5.1308590 | |||
| ENSG00000165617 | 2.1225213 | 1.5324289 | 4.910288 | 6.623001 | 0.0091756 | 0.4350072 | ENSG00000165617 | DACT1 | dishevelled binding antagonist of beta catenin 1 | 14 | 58633967 | 58648321 | protein_coding | HGNC:17748 | 3.8161296 | 3.5651274 | 1.1743431 | 0.0798307 | 2.5717533 | 1.2854371 | 4.4726891 | 3.3944207 | 4.8653166 | 2.1506357 | 4.6599804 | 3.8934210 | 4.3661182 | 2.6483973 |
| ENSG00000235176 | -0.0743097 | -7.0578021 | 3.293692 | 6.800589 | 0.0092081 | 0.4350072 | ENSG00000235176 | POLR1H | RNA polymerase I subunit H | HSCHR6_MHC_MANN_CTG1 | 1319656 | 1325658 | protein_coding | HGNC:13182 | 2.8634875 | 2.2008919 | 1.4096462 | 2.1620611 | 1.9039958 | 1.0268985 | 2.3424617 | 2.6150393 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 1.9002288 | 2.0465923 |
| ENSG00000100439 | 1.5065226 | 1.6118923 | 4.954499 | 6.615113 | 0.0092299 | 0.4350072 | ENSG00000100439 | ABHD4 | abhydrolase domain containing 4, N-acyl phospholipase B | 14 | 22598290 | 22612963 | protein_coding | HGNC:20154 | 2.7445023 | 2.6609797 | 2.1250556 | 3.6533416 | 2.7339120 | 3.7694652 | 4.2211065 | 3.5250380 | 5.0375517 | 3.3575368 | 5.0010708 | 4.4016868 | 4.3924472 | 3.0663917 |
| ENSG00000077380 | -0.5075927 | -1.7084999 | 4.878919 | 6.603404 | 0.0092650 | 0.4350446 | ENSG00000077380 | DYNC1I2 | dynein cytoplasmic 1 intermediate chain 2 | 2 | 171687409 | 171750158 | protein_coding | HGNC:2964 | 4.7098365 | 4.0831105 | 4.4452131 | 4.0544206 | 3.7626745 | 5.2583633 | 4.0956684 | 3.3051019 | 4.6650798 | 2.6067397 | 4.6946058 | 3.9993840 | 4.1251965 | 4.4742946 |
| ENSG00000107731 | 2.0552159 | 2.3300445 | 6.015326 | 6.580191 | 0.0093728 | 0.4384054 | ENSG00000107731 | UNC5B | unc-5 netrin receptor B | 10 | 71212570 | 71302864 | protein_coding | HGNC:12568 | 2.4174081 | 4.0347209 | 0.7904067 | 1.4746909 | 0.1510223 | 0.4496575 | 3.1196173 | 3.7878912 | 5.1089029 | 3.4943912 | 5.3123192 | 4.6725464 | 4.2482570 | 2.2588566 |
| ENSG00000184254 | 1.0587094 | 0.0549403 | 5.714488 | 6.567032 | 0.0094058 | 0.4384054 | ENSG00000184254 | ALDH1A3 | aldehyde dehydrogenase 1 family member A3 | 15 | 100861924 | 100916626 | protein_coding | HGNC:409 | 4.3615055 | 4.3804640 | 4.3447037 | 4.3243831 | 3.9611124 | 3.5752044 | 4.9953968 | 5.2220407 | 5.3026993 | 4.6940087 | 3.7946072 | 4.3132894 | 5.1791487 | 4.1862668 |
| ENSG00000105664 | 3.7548329 | -0.0893030 | 9.108648 | 6.544556 | 0.0094904 | 0.4404622 | ENSG00000105664 | COMP | cartilage oligomeric matrix protein | 19 | 18782773 | 18791305 | protein_coding | HGNC:2227 | 8.3310115 | 5.4621615 | 2.0974608 | 2.5579847 | 4.5747586 | 5.0820215 | 8.3376355 | 5.0838820 | 11.2511981 | 4.4322155 | 7.0330404 | 6.2531773 | 9.8636383 | 6.1765079 |
| ENSG00000270890 | 1.2663808 | 0.5741130 | 3.604248 | 6.500097 | 0.0095205 | 0.4404622 | ENSG00000270890 | 6 | 143858062 | 143858689 | processed_pseudogene | 4.7459005 | 4.2410782 | 5.0913668 | 5.2214209 | 4.2696355 | 5.1512496 | 5.3087861 | 6.1085017 | 6.1340795 | 5.1070197 | 5.5338753 | 5.3361773 | 5.8977995 | 4.8410316 | |||
| ENSG00000151881 | 0.1016252 | 1.8183292 | 2.368624 | 5.994369 | 0.0095770 | 0.4404622 | ENSG00000151881 | TMEM267 | transmembrane protein 267 | 5 | 43444252 | 43483893 | protein_coding | HGNC:26139 | -1.3730544 | 0.1277521 | 2.6550383 | 1.4136520 | 1.2463302 | 3.1846748 | 1.6093725 | 0.0500182 | 1.4799072 | 4.6783222 | 2.5836714 | 3.9818104 | 1.1965605 | 1.8683087 |
| ENSG00000164430 | 1.6838870 | 1.9064305 | 2.521153 | 5.935403 | 0.0096233 | 0.4404622 | ENSG00000164430 | CGAS | cyclic GMP-AMP synthase | 6 | 73413515 | 73452297 | protein_coding | HGNC:21367 | -0.2917668 | 0.4560975 | 1.1114260 | 1.1601089 | -0.7465601 | 1.3591000 | 1.4697927 | 0.5477469 | 2.5488913 | 1.4150896 | 3.9737124 | 3.1998972 | 1.7489571 | 0.6997497 |
| ENSG00000161939 | 1.8815562 | 1.4797328 | 3.362836 | 6.312090 | 0.0096236 | 0.4404622 | ENSG00000161939 | RNASEK-C17orf49 | 17 | 7012635 | 7017520 | protein_coding | HGNC:44419 | 2.6434450 | 4.1542855 | 2.6399323 | 2.2352764 | -13.2877124 | 1.0364583 | 5.0235664 | 4.3345953 | 3.7621801 | 4.0669045 | 4.1872840 | 4.1283495 | 4.4653608 | 2.6263216 | |
| ENSG00000100568 | 0.7681081 | 0.5119051 | 6.511402 | 6.499674 | 0.0097227 | 0.4433952 | ENSG00000100568 | VTI1B | vesicle transport through interaction with t-SNAREs 1B | 14 | 67647085 | 67674820 | protein_coding | HGNC:17793 | 4.6934637 | 4.7718484 | 4.2596535 | 4.1401925 | 4.5199214 | 4.6498552 | 5.0884348 | 4.7313740 | 5.0706671 | 4.8488303 | 5.1819919 | 5.0250071 | 4.9725838 | 4.5238542 |
| ENSG00000172830 | -1.2220678 | -0.0194071 | 3.848018 | 6.500748 | 0.0098490 | 0.4438855 | ENSG00000172830 | SSH3 | slingshot protein phosphatase 3 | 11 | 67303478 | 67312607 | protein_coding | HGNC:30581 | 2.9313990 | 4.7945852 | 3.1459396 | 3.9933349 | 4.6588532 | 3.4556509 | 2.7513116 | 1.2402862 | 2.4531072 | 2.6150787 | 3.7255803 | 3.2746411 | 2.2801335 | 4.0058799 |
| ENSG00000253485 | 1.2261646 | 2.8620085 | 2.515819 | 5.822519 | 0.0098549 | 0.4438855 | ENSG00000253485 | PCDHGA5 | protocadherin gamma subfamily A, 5 | 5 | 141364162 | 141512975 | protein_coding | HGNC:8703 | -13.2877124 | -0.0827623 | -0.8536550 | -13.2877124 | 0.1487897 | -13.2877124 | -13.2877124 | 1.7997824 | -0.2697905 | 2.4282290 | 1.7104430 | 2.1135232 | 0.5231323 | -1.2028110 |
| ENSG00000118849 | 2.0322881 | 1.9929030 | 2.930983 | 6.012887 | 0.0098745 | 0.4438855 | ENSG00000118849 | RARRES1 | retinoic acid receptor responder 1 | 3 | 158696892 | 158732489 | protein_coding | HGNC:9867 | -13.2877124 | 0.0619227 | 3.0374428 | -13.2877124 | 2.8540381 | 1.8957071 | 2.9127501 | 3.6047749 | 3.6055982 | 4.7097562 | 3.1544205 | 4.1322577 | 3.4091343 | 1.7517251 |
| ENSG00000113916 | -1.2271612 | -1.0450295 | 4.470514 | 6.488708 | 0.0098795 | 0.4438855 | ENSG00000113916 | BCL6 | BCL6 transcription repressor | 3 | 187721377 | 187745725 | protein_coding | HGNC:1001 | 3.6224312 | 3.5908294 | 4.3426859 | 5.3493021 | 3.1247344 | 3.5191833 | 2.7420849 | 2.7699860 | 1.5633300 | 2.9870860 | 2.8063022 | 2.8995241 | 2.4565197 | 4.1376170 |
| ENSG00000196739 | 0.3134777 | 1.4409239 | 3.948477 | 6.471226 | 0.0099085 | 0.4438855 | ENSG00000196739 | COL27A1 | collagen type XXVII alpha 1 chain | 9 | 114155537 | 114312511 | protein_coding | HGNC:22986 | 2.1147681 | 1.2011433 | 1.0748267 | 1.5420391 | 0.9764282 | 0.7472043 | 2.1431357 | 1.8482658 | 2.3130113 | 2.9243802 | 2.2756463 | 2.6361745 | 2.1140421 | 1.3500327 |
We can also make each comparison individually
outPath = "output/fibroblast/DEG"
Test = "FB.SCN2A.vs.WT"
qlf = glmQLFTest(fit, coef=2)
sig.gene.summary(qlf)
## q0.005 q0.01 q0.05 q0.2 p0.01
## Down 0 0 0 19 159
## NotSig 12675 12675 12671 12614 12276
## Up 3 3 7 45 243
deg = attach_annotations_by_p(qlf, 0.01)
maxAveTPM = data.frame(maxAveTPM = apply(deg[,c("SCN2A", "WT")], 1, max))
deg = cbind(deg, maxAveTPM)
# deg %>%
# kbl() %>%
# kable_styling(bootstrap_options = c("striped", "hover", "condensed")) %>%
# scroll_box(width = "100%", height = "300px")
write.table(deg, file=paste(outPath,ExperimentName,Test,"txt", sep="."), quote=FALSE, row.names=TRUE, col.names=TRUE, sep="\t")
#MvsA plot
ggplot(data = as.data.frame(topTags(qlf, n=NULL)) %>% arrange(desc(PValue)), aes(x=logCPM, y=logFC)) +
geom_point(aes(color=PValue<0.01)) +
scale_color_manual(values = xgfs_normal12[c(13,2)]) +
theme_minimal()
#Volcano plot
ggplot(data = as.data.frame(topTags(qlf, n=NULL)) %>% arrange(desc(PValue)), aes(x=logFC, y=-log10(PValue))) +
geom_point(aes(color=PValue<0.01)) +
scale_color_manual(values = xgfs_normal12[c(13,2)]) +
theme_minimal()
SCN2AUp = row.names(deg[deg[,"logFC"] > 0 & deg[,"maxAveTPM"] > log2(0.1),])
SCN2ADown = row.names(deg[deg[,"logFC"] < 0 & deg[,"maxAveTPM"] > log2(0.1),])
Test = "FB.CHD2.vs.WT"
qlf = glmQLFTest(fit, coef=3)
sig.gene.summary(qlf)
## q0.005 q0.01 q0.05 q0.2 p0.01
## Down 0 0 0 1 53
## NotSig 12677 12676 12674 12668 12483
## Up 1 2 4 9 142
deg = attach_annotations_by_p(qlf, 0.01)
maxAveTPM = data.frame(maxAveTPM = apply(deg[,c("CHD2", "WT")], 1, max))
deg = cbind(deg, maxAveTPM)
# deg %>%
# kbl() %>%
# kable_styling(bootstrap_options = c("striped", "hover", "condensed")) %>%
# scroll_box(width = "100%", height = "300px")
write.table(deg, file=paste(outPath,ExperimentName,Test,"txt", sep="."), quote=FALSE, row.names=TRUE, col.names=TRUE, sep="\t")
#MvsA plot
ggplot(data = as.data.frame(topTags(qlf, n=NULL)) %>% arrange(desc(PValue)), aes(x=logCPM, y=logFC)) +
geom_point(aes(color=PValue<0.01)) +
scale_color_manual(values = xgfs_normal12[c(13,2)]) +
theme_minimal()
#Volcano plot
ggplot(data = as.data.frame(topTags(qlf, n=NULL)) %>% arrange(desc(PValue)), aes(x=logFC, y=-log10(PValue))) +
geom_point(aes(color=PValue<0.01)) +
scale_color_manual(values = xgfs_normal12[c(13,2)]) +
theme_minimal()
CHD2Up = row.names(deg[deg[,"logFC"] > 0 & deg[,"maxAveTPM"] > log2(0.1),])
CHD2Down = row.names(deg[deg[,"logFC"] < 0 & deg[,"maxAveTPM"] > log2(0.1),])
Test = "FB"
venn.diagram(list(CHD2 = CHD2Up, SCN2A = SCN2AUp), filename = paste(outPath,ExperimentName,Test,"up.png", sep="."), imagetype = "png", main = paste(Test, "up regulated", sep = " "), col = xgfs_normal12[1:2])
## [1] 1
venn.diagram(list(CHD2 = CHD2Down, SCN2A = SCN2ADown), filename = paste(outPath,ExperimentName,Test,"down.png", sep="."), imagetype = "png", main = paste(Test, "down regulated", sep = " "), col = xgfs_normal12[1:2])
## [1] 1
SCN2AUp.FB = SCN2AUp
SCN2ADown.FB = SCN2ADown
CHD2Up.FB = CHD2Up
CHD2Down.FB = CHD2Down
Note:
Test the differences between WT, SCN2A and CHD2 at day 10 of transdifferentiation
fit = test_a_diff_state(diffState = "day_10", countTable = counts.current)
qlf = glmQLFTest(fit, coef=2:3)
sig.gene.summary(qlf)
## q0.005 q0.01 q0.05 q0.2 p0.01
## NotSig 13417 13416 13416 13406 13190
## Sig 0 1 1 11 227
d10.genes.expressed = rownames(qlf$table)
attach_annotations_by_p(qlf, 0.01) %>%
kbl() %>%
kable_styling(bootstrap_options = c("striped", "hover", "condensed")) %>%
scroll_box(width = "100%", height = "300px")
| logFC.fSCN2A | logFC.fCHD2 | logCPM | F | PValue | FDR | ensembl_gene_id | hgnc_symbol | entrezgene_description | chromosome_name | start_position | end_position | gene_biotype | hgnc_id | CON_1_d10 | CON_2_d10 | CON_3_d10 | CON_4_d10 | SCN2A_1_d10 | SCN2A_2_d10 | SCN2A_3_d10 | CHD2_1_d10 | CHD2_2_d10 | CHD2 | SCN2A | WT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000205670 | 1.1109690 | -2.8670979 | 5.111151 | 56.216825 | 0.0000007 | 0.0096303 | ENSG00000205670 | SMIM11 | small integral membrane protein 11 | 21 | 34375480 | 34416961 | protein_coding | HGNC:1293 | 1.7279004 | 1.8757907 | 2.3472333 | 2.6248601 | 3.4989420 | 3.2143996 | 3.1711564 | -0.2125826 | -0.9589814 | -0.5380409 | 3.3023126 | 2.1889706 |
| ENSG00000145423 | 1.6377410 | -3.9650408 | 4.829294 | 30.689430 | 0.0000113 | 0.0744249 | ENSG00000145423 | SFRP2 | secreted frizzled related protein 2 | 4 | 153780591 | 153789083 | protein_coding | HGNC:10777 | 2.8385954 | 1.9235029 | 3.3462642 | 3.5103637 | 4.8870347 | 3.7472545 | 5.2329475 | -0.3310041 | -2.5659723 | -1.0531075 | 4.7482138 | 3.0229027 |
| ENSG00000167654 | -1.8586439 | -4.4124957 | 3.351054 | 27.201655 | 0.0000166 | 0.0744249 | ENSG00000167654 | ATCAY | ATCAY kinesin light chain interacting caytaxin | 19 | 3879864 | 3928082 | protein_coding | HGNC:779 | 1.2929837 | 1.5053285 | 1.7844562 | 1.0400269 | -0.2760868 | -0.2171520 | 0.0090848 | -2.6193858 | -2.4218631 | -2.5172467 | -0.1560660 | 1.4316748 |
| ENSG00000274803 | -4.7279520 | -8.5497244 | 3.297805 | 22.596314 | 0.0000329 | 0.1102878 | ENSG00000274803 | BDP1 | B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB | HSCHR5_1_CTG1_1 | 985599 | 1097795 | protein_coding | HGNC:13652 | 0.8649211 | -0.2879325 | 1.9532470 | -0.1561801 | -13.2877124 | -0.7935493 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -2.3780120 | 0.8895055 |
| ENSG00000168280 | -1.6429411 | -3.1411079 | 4.864263 | 24.751557 | 0.0000532 | 0.1427689 | ENSG00000168280 | KIF5C | kinesin family member 5C | 2 | 148875227 | 149026759 | protein_coding | HGNC:6325 | 2.5084451 | 2.4759292 | 2.9638224 | 2.1493872 | 1.6612128 | -0.0883897 | 0.7404112 | 0.0756805 | 1.6581863 | 1.0738381 | 0.9446201 | 2.5540728 |
| ENSG00000228299 | 9.2721868 | 7.0535966 | 5.991991 | 21.269655 | 0.0000892 | 0.1824389 | ENSG00000228299 | HLA-C | major histocompatibility complex, class I, C | HSCHR6_MHC_DBB_CTG1 | 2526549 | 2529920 | protein_coding | HGNC:4933 | -13.2877124 | -13.2877124 | -0.7530836 | -13.2877124 | 5.2226331 | 7.0679616 | 7.6151456 | 6.1786337 | -13.2877124 | 5.1786357 | 6.9369237 | -2.7523544 |
| ENSG00000254245 | -0.8293449 | 1.8080382 | 4.565303 | 21.912353 | 0.0000969 | 0.1824389 | ENSG00000254245 | PCDHGA3 | protocadherin gamma subfamily A, 3 | 5 | 141343829 | 141512975 | protein_coding | HGNC:8701 | 2.0890106 | 2.2563788 | 2.0353779 | 0.6936560 | 2.0619932 | 0.5106885 | 1.1658566 | 3.6409081 | 2.6946877 | 3.2440209 | 1.3866311 | 1.8825597 |
| ENSG00000242265 | 1.0532422 | -2.0926882 | 5.210991 | 21.284756 | 0.0001088 | 0.1824389 | ENSG00000242265 | PEG10 | paternally expressed 10 | 7 | 94656325 | 94669695 | protein_coding | HGNC:14005 | 4.0088744 | 2.0018033 | 2.2697546 | 3.5097194 | 4.5132524 | 3.6865599 | 4.3025930 | 0.3319734 | -0.6381957 | -0.0730518 | 4.2080361 | 3.1825463 |
| ENSG00000104332 | -1.0134353 | -3.1659616 | 5.700179 | 20.487815 | 0.0001296 | 0.1932381 | ENSG00000104332 | SFRP1 | secreted frizzled related protein 1 | 8 | 41261962 | 41309473 | protein_coding | HGNC:10776 | 3.9264478 | 3.4237250 | 3.4913146 | 4.3097311 | 2.3617981 | 2.7371009 | 3.4832480 | 1.2789363 | -0.3836743 | 0.6749505 | 2.9380032 | 3.8332253 |
| ENSG00000169432 | -1.9965164 | -4.1318240 | 2.730590 | 17.197044 | 0.0001503 | 0.1953724 | ENSG00000169432 | SCN9A | sodium voltage-gated channel alpha subunit 9 | 2 | 166195185 | 166376001 | protein_coding | HGNC:10597 | 0.8072428 | 0.9149257 | 0.8664364 | -0.4965332 | -0.9351668 | -1.0184629 | 0.2491565 | -2.8731434 | -0.1636670 | -0.9584178 | -0.4440949 | 0.6246386 |
| ENSG00000165507 | 0.9894895 | 2.1080638 | 6.627775 | 19.536910 | 0.0001602 | 0.1953724 | ENSG00000165507 | DEPP1 | DEPP autophagy regulator 1 | 10 | 44970981 | 44978809 | protein_coding | HGNC:23355 | 5.3448830 | 4.6217167 | 4.3611750 | 5.1185411 | 6.3556513 | 5.9077408 | 6.6080715 | 7.6372956 | 6.5798852 | 7.2033740 | 6.3187839 | 4.9135204 |
| ENSG00000115648 | 0.6637055 | 2.8296577 | 4.787978 | 19.148913 | 0.0001816 | 0.2030415 | ENSG00000115648 | MLPH | melanophilin | 2 | 237485428 | 237555322 | protein_coding | HGNC:29643 | 2.7780062 | 1.7881357 | 0.1319937 | 3.8152768 | 3.2319968 | 3.4589770 | 2.2336810 | 5.6774482 | 4.7123012 | 5.2741222 | 3.0643962 | 2.6716111 |
| ENSG00000283589 | 4.2431217 | 1.1638787 | 2.686979 | 13.899336 | 0.0002423 | 0.2500604 | ENSG00000283589 | GOLGA8N | golgin A8 family member N | HSCHR15_6_CTG8 | 2111786 | 2125658 | protein_coding | HGNC:44405 | -1.7461172 | -13.2877124 | -13.2877124 | -2.7816429 | 1.5893800 | -0.4985191 | 1.8194708 | -1.3659793 | -1.4289970 | -1.3971441 | 1.2723318 | -3.1722486 |
| ENSG00000204469 | -8.1719015 | -10.3683092 | 4.991044 | 18.617891 | 0.0003142 | 0.3011576 | ENSG00000204469 | PRRC2A | proline rich coiled-coil 2A | 6 | 31620715 | 31637771 | protein_coding | HGNC:13918 | 4.1279226 | 3.4733313 | -2.1966473 | 2.8831107 | -1.0479587 | -13.2877124 | -3.0299121 | -13.2877124 | -13.2877124 | -13.2877124 | -2.3071279 | 3.1773411 |
| ENSG00000137801 | 0.0262683 | -2.5596675 | 7.996566 | 16.415296 | 0.0003523 | 0.3150825 | ENSG00000137801 | THBS1 | thrombospondin 1 | 15 | 39581079 | 39599466 | protein_coding | HGNC:11785 | 5.6404140 | 4.9126265 | 5.6298109 | 5.8846672 | 6.1183209 | 5.6366534 | 5.5489828 | 4.2539723 | 3.5298584 | 3.9368772 | 5.7904144 | 5.5591767 |
| ENSG00000115596 | 0.8455571 | 4.1873444 | 1.683187 | 11.552663 | 0.0004815 | 0.4037877 | ENSG00000115596 | WNT6 | Wnt family member 6 | 2 | 218859805 | 218874233 | protein_coding | HGNC:12785 | -13.2877124 | -1.6824875 | -1.0461373 | -13.2877124 | -13.2877124 | -0.1101169 | -1.8813426 | 2.5981708 | 1.3846074 | 2.1153985 | -1.3242816 | -2.3291452 |
| ENSG00000165973 | 0.8718048 | 4.7395410 | 2.035979 | 11.162162 | 0.0005796 | 0.4314633 | ENSG00000165973 | NELL1 | neural EGFL like 1 | 11 | 20669551 | 21575686 | protein_coding | HGNC:7750 | -13.2877124 | -1.2367924 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -0.5197742 | 1.4369406 | 2.1892252 | 1.8615715 | -2.1043233 | -3.2357721 |
| ENSG00000205213 | -0.6779152 | -3.0626138 | 3.798560 | 14.422854 | 0.0005923 | 0.4314633 | ENSG00000205213 | LGR4 | leucine rich repeat containing G protein-coupled receptor 4 | 11 | 27365961 | 27472790 | protein_coding | HGNC:13299 | 4.5831596 | 2.9476684 | 1.4511721 | 1.1961544 | 1.2998448 | -0.0778052 | 1.3663502 | -1.3449047 | -1.7428300 | -1.5301911 | 0.9970387 | 3.1981256 |
| ENSG00000017483 | 0.8104196 | 3.0098249 | 4.234887 | 14.561185 | 0.0006110 | 0.4314633 | ENSG00000017483 | SLC38A5 | solute carrier family 38 member 5 | X | 48458537 | 48470260 | protein_coding | HGNC:18070 | 3.5926969 | 1.1643023 | 0.0294656 | 2.7056367 | 3.8544549 | 4.5717265 | 2.2958934 | 5.1962599 | 5.8797335 | 5.5780980 | 3.8465268 | 2.4495511 |
| ENSG00000118971 | 0.1210536 | -1.9403977 | 6.479976 | 14.218537 | 0.0006583 | 0.4416314 | ENSG00000118971 | CCND2 | cyclin D2 | 12 | 4269771 | 4305353 | protein_coding | HGNC:1583 | 3.4159502 | 3.1812467 | 3.1329181 | 4.3220903 | 3.8280078 | 3.6640953 | 4.0309842 | 1.4934665 | 1.8364025 | 1.6751001 | 3.8488581 | 3.6004674 |
| ENSG00000160111 | 0.3052606 | 3.0614858 | 2.354876 | 11.832118 | 0.0007427 | 0.4425982 | ENSG00000160111 | CPAMD8 | C3 and PZP like alpha-2-macroglobulin domain containing 8 | 19 | 16892951 | 17026815 | protein_coding | HGNC:23228 | 0.4516052 | -1.8298698 | -2.1918605 | -13.2877124 | -0.3429875 | 0.5032999 | -2.0285046 | 2.2223038 | 1.8132374 | 2.0322208 | -0.2916109 | -1.0986446 |
| ENSG00000197467 | -0.9520930 | 1.5497010 | 3.663131 | 13.800174 | 0.0007505 | 0.4425982 | ENSG00000197467 | COL13A1 | collagen type XIII alpha 1 chain | 10 | 69801880 | 69964275 | protein_coding | HGNC:2190 | 1.8695990 | 1.3102214 | -0.0271442 | 2.1972864 | 2.1202998 | 0.3796786 | 0.9394523 | 3.5343155 | 3.1617760 | 3.3600374 | 1.3347010 | 1.5486374 |
| ENSG00000105825 | 1.3037831 | -1.6871851 | 6.079915 | 13.357398 | 0.0008589 | 0.4425982 | ENSG00000105825 | TFPI2 | tissue factor pathway inhibitor 2 | 7 | 93885396 | 93890753 | protein_coding | HGNC:11761 | 5.1378723 | 4.1513688 | 3.2912051 | 5.3712959 | 6.2995564 | 5.5501518 | 6.5037886 | 2.6405834 | 3.4846938 | 3.1235131 | 6.1724099 | 4.7026674 |
| ENSG00000168237 | 0.3335141 | -3.7780785 | 6.694987 | 13.137480 | 0.0009231 | 0.4425982 | ENSG00000168237 | GLYCTK | glycerate kinase | 3 | 52287089 | 52295257 | protein_coding | HGNC:24247 | 5.1591939 | 3.3703807 | 6.8853731 | 5.5198300 | 5.2560339 | 6.2449395 | 6.6139252 | 2.4300960 | 2.0284599 | 2.2432096 | 6.1429824 | 5.7154777 |
| ENSG00000154258 | -0.0559019 | -7.6200980 | 3.139800 | 13.885999 | 0.0009744 | 0.4425982 | ENSG00000154258 | ABCA9 | ATP binding cassette subfamily A member 9 | 17 | 68974488 | 69060949 | protein_coding | HGNC:39 | 2.4871804 | -0.0475367 | 1.0178934 | 1.4121230 | 0.2108464 | 0.3432964 | 0.7537688 | -13.2877124 | -13.2877124 | -13.2877124 | 0.4549518 | 1.4932174 |
| ENSG00000008394 | 0.6284339 | -5.4315692 | 3.442209 | 12.893930 | 0.0009859 | 0.4425982 | ENSG00000008394 | MGST1 | microsomal glutathione S-transferase 1 | 12 | 16347142 | 16609259 | protein_coding | HGNC:7061 | 3.7723263 | 1.4563178 | 4.5962984 | 3.7300340 | 5.1762131 | 3.6014976 | 4.2881949 | -1.2645887 | -13.2877124 | -2.2642422 | 4.4989605 | 3.7513296 |
| ENSG00000234046 | 0.0000000 | 8.4968005 | 2.379406 | 21.237015 | 0.0009883 | 0.4425982 | ENSG00000234046 | TRIM26 | tripartite motif containing 26 | HSCHR6_MHC_SSTO_CTG1 | 1483342 | 1512318 | protein_coding | HGNC:12962 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 2.9744884 | 2.4452105 | 2.7339864 | -13.2877124 | -13.2877124 |
| ENSG00000007384 | 0.2192033 | 1.8962821 | 5.188225 | 12.871332 | 0.0010067 | 0.4425982 | ENSG00000007384 | RHBDF1 | rhomboid 5 homolog 1 | 16 | 58059 | 76355 | protein_coding | HGNC:20561 | 4.9570674 | 3.7113923 | 2.5766701 | 2.4842116 | 4.2122701 | 3.2420682 | 3.4755852 | 4.7677630 | 4.9206257 | 4.8462180 | 3.7049273 | 3.8001679 |
| ENSG00000160200 | 1.9484898 | -0.9846753 | 3.615289 | 12.758616 | 0.0010308 | 0.4425982 | ENSG00000160200 | CBS | cystathionine beta-synthase | 21 | 43053191 | 43076943 | protein_coding | HGNC:1550 | 3.9703794 | 2.3958385 | 0.0652359 | 2.2395700 | 2.9207704 | 3.2374290 | 3.7355614 | 2.4681800 | 2.0895490 | 2.2912505 | 3.3374250 | 2.7391188 |
| ENSG00000188833 | 0.6340263 | 2.4783781 | 3.419000 | 12.679238 | 0.0010528 | 0.4425982 | ENSG00000188833 | ENTPD8 | ectonucleoside triphosphate diphosphohydrolase 8 | 9 | 137434364 | 137441816 | protein_coding | HGNC:24860 | 0.2863785 | 1.4036086 | 0.7689346 | -0.3079800 | 1.9039938 | 1.6627073 | 0.8143765 | 2.6349011 | 3.9332913 | 3.4254825 | 1.5305897 | 0.6728743 |
| ENSG00000132821 | -2.3442558 | -1.5482852 | 2.992106 | 12.153052 | 0.0010832 | 0.4425982 | ENSG00000132821 | VSTM2L | V-set and transmembrane domain containing 2 like | 20 | 37903111 | 37945350 | protein_coding | HGNC:16096 | 2.7550230 | 2.8443157 | 3.6772428 | 2.2900186 | 1.7292386 | 0.0115772 | 1.5976041 | 2.0208172 | 1.2625089 | 1.6909226 | 1.2927794 | 2.9825627 |
| ENSG00000183311 | -3.6059940 | -3.9556202 | 2.433442 | 10.300078 | 0.0011152 | 0.4425982 | ENSG00000183311 | TUBB | tubulin beta class I | HSCHR6_MHC_QBL_CTG1 | 1975313 | 1980539 | protein_coding | HGNC:20778 | 2.1071793 | 1.7161279 | 0.7357301 | 1.0468032 | -13.2877124 | -0.6001464 | -13.2877124 | -1.5406313 | -13.2877124 | -2.5402117 | -2.1846718 | 1.5014649 |
| ENSG00000232653 | -2.5575513 | -0.0982507 | 3.450142 | 11.940580 | 0.0011666 | 0.4425982 | ENSG00000232653 | GOLGA8N | golgin A8 family member N | 15 | 32593456 | 32607310 | protein_coding | HGNC:44405 | 1.7567492 | 0.7788982 | 1.9097074 | 3.4515226 | 1.4031597 | -0.1496838 | 0.3535480 | 2.6452172 | 2.6542463 | 2.6497389 | 0.6852522 | 2.3068723 |
| ENSG00000158270 | -0.6127930 | -1.7261682 | 5.876244 | 12.374673 | 0.0011751 | 0.4425982 | ENSG00000158270 | COLEC12 | collectin subfamily member 12 | 18 | 316737 | 500722 | protein_coding | HGNC:16016 | 3.0665532 | 3.1031770 | 4.0745003 | 3.8280717 | 3.5029646 | 2.5243757 | 3.3274172 | 2.0994544 | 1.7926309 | 1.9541840 | 3.1767667 | 3.5855999 |
| ENSG00000233564 | -1.6094214 | -4.8442323 | 4.305777 | 11.791539 | 0.0011838 | 0.4425982 | ENSG00000233564 | PRR3 | proline rich 3 | HSCHR6_MHC_MCF_CTG1 | 1900932 | 1907769 | protein_coding | HGNC:21149 | 3.0561978 | 4.1797210 | 3.8454717 | 3.6660564 | -13.2877124 | 3.6966496 | 2.4390385 | 2.5500651 | 2.6242862 | 2.5876530 | 2.6157925 | 3.7417115 |
| ENSG00000206406 | -2.2030896 | 3.3228046 | 2.682846 | 10.606853 | 0.0012292 | 0.4425982 | ENSG00000206406 | CSNK2B | casein kinase 2 beta | HSCHR6_MHC_QBL_CTG1 | 2921060 | 2929370 | protein_coding | HGNC:2460 | -13.2877124 | -13.2877124 | 3.2513866 | -13.2877124 | -0.1222212 | -0.4761530 | -13.2877124 | 3.6229141 | 4.9455371 | 4.4307654 | -0.8732351 | 1.2514321 |
| ENSG00000179431 | -0.7258902 | -2.0518807 | 4.075301 | 12.209142 | 0.0012620 | 0.4425982 | ENSG00000179431 | FJX1 | four-jointed box kinase 1 | 11 | 35618460 | 35620865 | protein_coding | HGNC:17166 | 2.6575611 | 3.0514170 | 2.6887616 | 3.2933334 | 2.4390912 | 2.4732648 | 2.7955542 | 0.9181702 | 0.9052746 | 0.9117368 | 2.5784531 | 2.9472575 |
| ENSG00000225164 | 0.0000000 | 9.5098889 | 3.256448 | 19.124772 | 0.0013538 | 0.4425982 | ENSG00000225164 | PRRC2A | proline rich coiled-coil 2A | HSCHR6_MHC_COX_CTG1 | 3098008 | 3115058 | protein_coding | HGNC:13918 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -0.9577843 | 3.0201178 | 2.1088897 | -13.2877124 | -13.2877124 |
| ENSG00000131969 | 3.4620508 | 2.9384847 | 2.212305 | 9.908798 | 0.0013759 | 0.4425982 | ENSG00000131969 | ABHD12B | abhydrolase domain containing 12B | 14 | 50872053 | 50904970 | protein_coding | HGNC:19837 | -13.2877124 | -0.5487546 | -1.6944146 | -0.3734338 | -0.0329332 | 2.1736900 | 3.3812698 | 1.4594122 | 0.9845456 | 1.2414293 | 2.4068171 | -1.1806320 |
| ENSG00000111203 | 2.0252827 | 1.0617995 | 3.849232 | 11.889978 | 0.0014008 | 0.4425982 | ENSG00000111203 | ITFG2 | integrin alpha FG-GAP repeat containing 2 | 12 | 2812622 | 2859791 | protein_coding | HGNC:30879 | 2.7923000 | 1.6070239 | 2.6607938 | 1.0588665 | 3.0775479 | 4.2321180 | 4.5872816 | 3.0355227 | 2.5246913 | 2.8025994 | 4.0951740 | 2.2001170 |
| ENSG00000138080 | -0.3085759 | 0.9234370 | 6.803911 | 11.835285 | 0.0014050 | 0.4425982 | ENSG00000138080 | EMILIN1 | elastin microfibril interfacer 1 | 2 | 27078615 | 27086403 | protein_coding | HGNC:19880 | 4.3117245 | 4.5669276 | 4.2886445 | 3.9048330 | 4.2237666 | 4.0446854 | 4.3756133 | 5.3180839 | 5.2273308 | 5.2734208 | 4.2210016 | 4.2869440 |
| ENSG00000104903 | -3.3250628 | -1.1489643 | 2.511549 | 10.305493 | 0.0014055 | 0.4425982 | ENSG00000104903 | LYL1 | LYL1 basic helix-loop-helix family member | 19 | 13099033 | 13103161 | protein_coding | HGNC:6734 | 2.9827813 | 0.8206773 | 2.3196176 | 2.3912148 | -0.5989048 | -0.9288442 | -1.6342716 | 1.6997897 | 0.2398159 | 1.1471041 | -0.9926446 | 2.3153713 |
| ENSG00000137959 | -3.7493182 | 0.2584196 | 3.807364 | 10.692692 | 0.0014185 | 0.4425982 | ENSG00000137959 | IFI44L | interferon induced protein 44 like | 1 | 78619902 | 78646145 | protein_coding | HGNC:17817 | 1.7298025 | 2.2748130 | 2.9152723 | 2.6758629 | -2.5287147 | -3.8546069 | -1.4952840 | -1.1490630 | 2.9017418 | 1.9862651 | -2.3288429 | 2.4653268 |
| ENSG00000284254 | -7.4811554 | -0.5334848 | 2.701008 | 13.242396 | 0.0015294 | 0.4458292 | ENSG00000284254 | HNRNPH1 | heterogeneous nuclear ribonucleoprotein H1 | HG30_PATCH | 380457 | 401011 | protein_coding | HGNC:5041 | 3.0319109 | 1.1206134 | 3.3655159 | 2.0891293 | -13.2877124 | -13.2877124 | -13.2877124 | 2.2586082 | 1.8542909 | 2.0705672 | -13.2877124 | 2.6389408 |
| ENSG00000176788 | 0.1613143 | -1.3599672 | 7.307437 | 11.566388 | 0.0015398 | 0.4458292 | ENSG00000176788 | BASP1 | brain abundant membrane attached signal protein 1 | 5 | 17065598 | 17276843 | protein_coding | HGNC:957 | 5.8035074 | 6.0800619 | 6.7326703 | 6.8156881 | 6.7469077 | 6.4201068 | 6.9583196 | 4.9973049 | 5.1343036 | 5.0674296 | 6.7251635 | 6.4199656 |
| ENSG00000092969 | -0.2834416 | -1.4033315 | 6.371103 | 11.542649 | 0.0015533 | 0.4458292 | ENSG00000092969 | TGFB2 | transforming growth factor beta 2 | 1 | 218345336 | 218444619 | protein_coding | HGNC:11768 | 3.7968237 | 3.6734049 | 3.5328547 | 3.9740996 | 3.4259394 | 3.5007973 | 3.8386479 | 2.6646917 | 2.0077222 | 2.3732843 | 3.5998940 | 3.7534566 |
| ENSG00000179862 | 2.2349505 | 3.7131524 | 2.067125 | 9.538592 | 0.0015626 | 0.4458292 | ENSG00000179862 | CITED4 | Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4 | 1 | 40861054 | 40862363 | protein_coding | HGNC:18696 | -1.8995767 | -1.2143842 | -13.2877124 | 0.2570867 | 0.2725548 | 1.5266017 | 1.5862527 | 1.7661346 | 3.1952569 | 2.6508608 | 1.2411676 | -1.0784555 |
| ENSG00000138744 | 0.7233345 | 2.3220666 | 2.700407 | 10.969078 | 0.0016308 | 0.4458292 | ENSG00000138744 | NAAA | N-acylethanolamine acid amidase | 4 | 75910655 | 75941013 | protein_coding | HGNC:736 | 0.9577222 | 0.9774074 | -0.5936549 | 0.2790754 | 1.6219862 | 3.3412615 | 2.3761467 | 3.2666170 | 2.9703849 | 3.1260909 | 2.6170147 | 0.5328765 |
| ENSG00000112246 | 1.1429846 | 1.6317212 | 5.093223 | 11.403473 | 0.0016422 | 0.4458292 | ENSG00000112246 | SIM1 | SIM bHLH transcription factor 1 | 6 | 100385009 | 100464921 | protein_coding | HGNC:10882 | 0.6727892 | 1.4008822 | 1.3227911 | 2.3554956 | 2.6243665 | 2.2124710 | 2.9492342 | 2.9156320 | 3.1835241 | 3.0557872 | 2.6263775 | 1.5672991 |
| ENSG00000168497 | -0.3204066 | 3.0347842 | 2.927116 | 10.483066 | 0.0016614 | 0.4458292 | ENSG00000168497 | CAVIN2 | caveolae associated protein 2 | 2 | 191834310 | 191847088 | protein_coding | HGNC:10690 | -13.2877124 | -0.3005248 | 0.4745991 | -0.7300237 | -0.3982655 | -2.0476903 | -0.2362366 | 3.3873086 | 0.3313819 | 2.5511255 | -0.6977507 | -0.5122651 |
| ENSG00000101445 | 1.5181257 | 2.0209976 | 5.213237 | 11.244765 | 0.0017377 | 0.4537567 | ENSG00000101445 | PPP1R16B | protein phosphatase 1 regulatory subunit 16B | 20 | 38805697 | 38923024 | protein_coding | HGNC:15850 | 1.0125823 | 1.7832249 | 0.0368943 | -0.1315835 | 2.3051992 | 2.6870761 | 2.7892600 | 3.0319066 | 2.9835163 | 3.0079143 | 2.6084289 | 0.8871735 |
| ENSG00000147488 | -1.8282392 | -3.6916631 | 4.236861 | 11.114090 | 0.0017586 | 0.4537567 | ENSG00000147488 | ST18 | ST18 C2H2C-type zinc finger transcription factor | 8 | 52110838 | 52460959 | protein_coding | HGNC:18695 | 2.3873545 | 2.1949229 | 3.8728472 | 2.6590788 | 2.3814310 | -0.2480205 | 2.1797910 | 0.2758748 | -0.6232540 | -0.1047493 | 1.8187774 | 2.9437857 |
| ENSG00000172803 | 1.0927335 | -0.3294587 | 5.663963 | 11.068735 | 0.0018360 | 0.4571760 | ENSG00000172803 | SNX32 | sorting nexin 32 | 11 | 65833834 | 65856896 | protein_coding | HGNC:26423 | 3.1856533 | 4.0130983 | 4.0857160 | 3.9391584 | 4.9308100 | 5.0048908 | 5.1543785 | 3.8681000 | 2.9787991 | 3.4909141 | 5.0330463 | 3.8470769 |
| ENSG00000224552 | -5.2752805 | -7.8924466 | 2.709324 | 11.232758 | 0.0018602 | 0.4571760 | ENSG00000224552 | ABHD16A | abhydrolase domain containing 16A, phospholipase | HSCHR6_MHC_MANN_CTG1 | 2991996 | 3008464 | protein_coding | HGNC:13921 | 3.2971644 | 3.6871195 | -13.2877124 | 3.2751315 | -13.2877124 | -0.1601113 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -1.7447516 | 3.0175334 |
| ENSG00000109610 | 2.4180852 | -1.6293247 | 2.353499 | 9.677085 | 0.0018741 | 0.4571760 | ENSG00000109610 | SOD3 | superoxide dismutase 3 | 4 | 24789912 | 24800842 | protein_coding | HGNC:11181 | 0.5536200 | -0.0237610 | 0.2901519 | 0.1267681 | 2.7263129 | 0.8109744 | 3.7405501 | 0.4679044 | -13.2877124 | -0.5319913 | 2.8572193 | 0.2527919 |
| ENSG00000127533 | -0.8207226 | 2.4328472 | 2.812399 | 10.019559 | 0.0020695 | 0.4746968 | ENSG00000127533 | F2RL3 | F2R like thrombin or trypsin receptor 3 | 19 | 16888999 | 16892606 | protein_coding | HGNC:3540 | -1.9260537 | 0.9304126 | -1.6012863 | -2.9306333 | -1.9217509 | -0.4424184 | -1.4379085 | 1.6670819 | 2.4273203 | 2.0967088 | -1.1319075 | -0.6050967 |
| ENSG00000196497 | -0.8173209 | -3.9896520 | 3.696830 | 10.251188 | 0.0021108 | 0.4746968 | ENSG00000196497 | IPO4 | importin 4 | 14 | 24180219 | 24188869 | protein_coding | HGNC:19426 | 3.3215385 | 2.5277064 | 1.8369700 | 3.6895111 | 3.2471125 | 4.2075146 | 4.0326916 | 0.6515665 | 1.8076958 | 1.3424694 | 3.8854603 | 3.0107050 |
| ENSG00000100156 | 0.1492725 | 2.2287968 | 2.448703 | 10.007818 | 0.0021143 | 0.4746968 | ENSG00000100156 | SLC16A8 | solute carrier family 16 member 8 | 22 | 38078134 | 38084184 | protein_coding | HGNC:16270 | 0.0662049 | 0.2544223 | 0.7898511 | 1.0572832 | 1.1994299 | 0.3254371 | 1.5524051 | 2.7696482 | 2.7009164 | 2.7356916 | 1.1116076 | 0.5968693 |
| ENSG00000085365 | 1.1029400 | 0.6018600 | 5.719130 | 10.672264 | 0.0021160 | 0.4746968 | ENSG00000085365 | SCAMP1 | secretory carrier membrane protein 1 | 5 | 78360611 | 78480739 | protein_coding | HGNC:10563 | 2.9002686 | 2.5603853 | 2.1300429 | 2.0289061 | 3.5616442 | 3.1990570 | 3.2831090 | 2.8789803 | 2.7692362 | 2.8251516 | 3.3564115 | 2.4477487 |
| ENSG00000134864 | 0.1187021 | 1.2949094 | 6.972478 | 10.649097 | 0.0021302 | 0.4746968 | ENSG00000134864 | GGACT | gamma-glutamylamine cyclotransferase | 13 | 100530164 | 100589528 | protein_coding | HGNC:25100 | 4.7324255 | 4.5462905 | 5.2670380 | 5.0913667 | 5.1820154 | 4.9741292 | 5.0385688 | 6.7495348 | 5.4892656 | 6.2528490 | 5.0675424 | 4.9371904 |
| ENSG00000156299 | 2.0587175 | -0.4450971 | 2.695254 | 10.202559 | 0.0021582 | 0.4746968 | ENSG00000156299 | TIAM1 | TIAM Rac1 associated GEF 1 | 21 | 31118416 | 31559977 | protein_coding | HGNC:11805 | -0.2541311 | -2.1038723 | -1.0897033 | -1.4186623 | 0.1355716 | 2.1644899 | 2.3621495 | -1.4454799 | -1.7387460 | -1.5846740 | 1.8376695 | -1.0626240 |
| ENSG00000144355 | -4.0365073 | -4.9222596 | 3.267762 | 9.033314 | 0.0021966 | 0.4753542 | ENSG00000144355 | DLX1 | distal-less homeobox 1 | 2 | 172084740 | 172089677 | protein_coding | HGNC:2914 | 3.0216403 | -0.5274207 | 5.1540587 | 2.0795672 | -13.2877124 | 2.2421506 | -13.2877124 | 0.7277436 | -13.2877124 | -0.2721693 | 0.6572492 | 3.6043013 |
| ENSG00000157087 | -0.5043753 | -2.2337715 | 4.715261 | 10.509342 | 0.0022629 | 0.4819212 | ENSG00000157087 | ATP2B2 | ATPase plasma membrane Ca2+ transporting 2 | 3 | 10324023 | 10708007 | protein_coding | HGNC:815 | 1.0712272 | 2.5572912 | 2.4194588 | 2.5081817 | 1.4092302 | 1.9020002 | 2.4501922 | -0.5940512 | 1.3197069 | 0.6593008 | 1.9828450 | 2.2498976 |
| ENSG00000185567 | -0.7401934 | 0.4010970 | 7.041804 | 10.314589 | 0.0024082 | 0.4847097 | ENSG00000185567 | AHNAK2 | AHNAK nucleoprotein 2 | 14 | 104937244 | 104978374 | protein_coding | HGNC:20125 | 4.8392513 | 4.3175386 | 4.4160214 | 3.3841410 | 3.6880512 | 3.3047937 | 3.8281415 | 4.9904458 | 4.5429871 | 4.7839951 | 3.6234748 | 4.3282929 |
| ENSG00000156535 | -0.3727370 | -1.4097313 | 4.924772 | 10.306773 | 0.0024282 | 0.4847097 | ENSG00000156535 | CD109 | CD109 molecule | 6 | 73695785 | 73828316 | protein_coding | HGNC:21685 | 1.8103933 | 1.3090621 | 1.8251954 | 1.5185986 | 1.6410040 | 1.1888313 | 1.2870768 | 0.4033528 | 0.0647711 | 0.2439725 | 1.3856773 | 1.6315537 |
| ENSG00000106070 | -0.0556769 | -2.0774939 | 3.930836 | 10.311762 | 0.0024344 | 0.4847097 | ENSG00000106070 | GRB10 | growth factor receptor bound protein 10 | 7 | 50590063 | 50793462 | protein_coding | HGNC:4564 | 2.0080691 | 2.9010731 | 1.1806348 | 2.4004267 | 1.0886023 | 2.5079593 | 1.5374238 | 0.1787758 | 0.4167241 | 0.3026501 | 1.8369453 | 2.2508564 |
| ENSG00000070182 | 1.0047520 | 0.4675623 | 7.701029 | 10.272457 | 0.0024458 | 0.4847097 | ENSG00000070182 | SPTB | spectrin beta, erythrocytic | 14 | 64746283 | 64879907 | protein_coding | HGNC:11274 | 3.4098104 | 3.8632184 | 4.0110886 | 3.9612146 | 5.1080568 | 4.7535721 | 5.0061456 | 4.4226294 | 4.2329124 | 4.3308875 | 4.9634866 | 3.8298465 |
| ENSG00000185008 | -4.0504021 | -2.3216673 | 3.194014 | 9.115677 | 0.0024566 | 0.4847097 | ENSG00000185008 | ROBO2 | roundabout guidance receptor 2 | 3 | 75906695 | 77649964 | protein_coding | HGNC:10250 | -0.0104468 | 0.2729488 | 3.7566430 | -0.3918645 | -13.2877124 | -1.2811444 | -1.5631090 | -0.6933388 | -1.1282100 | -0.8944506 | -2.0000190 | 2.0426129 |
| ENSG00000187244 | -1.3307511 | 0.9282443 | 4.471305 | 10.218380 | 0.0025337 | 0.4876006 | ENSG00000187244 | BCAM | basal cell adhesion molecule (Lutheran blood group) | 19 | 44809071 | 44821421 | protein_coding | HGNC:6722 | 2.8482223 | 3.2440472 | 3.1977398 | 1.2039453 | 1.5366706 | 1.7608120 | 2.5502304 | 4.3361799 | 4.5188857 | 4.4304231 | 2.0176141 | 2.8152934 |
| ENSG00000095303 | -1.3151250 | 1.2854696 | 3.827693 | 10.171468 | 0.0025439 | 0.4876006 | ENSG00000095303 | PTGS1 | prostaglandin-endoperoxide synthase 1 | 9 | 122370530 | 122395703 | protein_coding | HGNC:9604 | 1.6795526 | 2.7398511 | 0.8898504 | -0.9132923 | 1.2919477 | -0.5378890 | 1.1850997 | 3.0977101 | 3.1968844 | 3.1481493 | 0.8509738 | 1.6167407 |
| ENSG00000225972 | 5.3153463 | 0.4829493 | 7.173928 | 10.037479 | 0.0027120 | 0.4920083 | ENSG00000225972 | MTND1P23 | 1 | 629062 | 629433 | unprocessed_pseudogene | HGNC:42092 | 6.5295148 | 3.8804919 | 5.7801248 | 6.4314709 | 6.5267854 | 4.8917045 | 12.9285377 | 6.6509177 | 6.1047169 | 6.4035132 | 11.3659572 | 5.9563604 | |
| ENSG00000161981 | 0.3981785 | 1.3846059 | 4.422801 | 10.012696 | 0.0027327 | 0.4920083 | ENSG00000161981 | SNRNP25 | small nuclear ribonucleoprotein U11/U12 subunit 25 | 16 | 53828 | 57669 | protein_coding | HGNC:14161 | 3.4204968 | 3.3191257 | 2.8046236 | 2.8251779 | 3.5071650 | 3.5444692 | 4.5905626 | 4.7168409 | 4.3163367 | 4.5304423 | 3.9736495 | 3.1194174 |
| ENSG00000276561 | -4.2075758 | -1.7310106 | 2.543450 | 8.998290 | 0.0027345 | 0.4920083 | ENSG00000276561 | IRF7 | interferon regulatory factor 7 | HSCHR11_1_CTG8 | 142446 | 145898 | protein_coding | HGNC:6122 | 3.4605077 | 0.8661404 | 3.4017038 | 3.4440725 | -13.2877124 | -0.8070004 | -0.1140852 | 1.7661198 | -0.0409703 | 1.1287487 | -1.0042023 | 3.0994231 |
| ENSG00000250492 | -0.7464510 | 2.0473500 | 2.895811 | 9.575361 | 0.0027882 | 0.4920083 | ENSG00000250492 | INTS6P1 | 5 | 39718984 | 39721513 | processed_pseudogene | HGNC:43921 | 0.6914413 | 0.5845825 | 0.1224806 | 0.1542643 | -2.4193914 | 0.9520346 | -1.5207736 | 1.8663027 | 2.9768147 | 2.5258723 | -0.2804322 | 0.4103302 | |
| ENSG00000171532 | -0.9919058 | -2.3233557 | 3.913187 | 9.953453 | 0.0027930 | 0.4920083 | ENSG00000171532 | NEUROD2 | neuronal differentiation 2 | 17 | 39603536 | 39609777 | protein_coding | HGNC:7763 | 1.7029966 | 2.9472135 | 2.6185474 | 1.7324203 | 1.5400615 | 1.8806409 | 1.3806203 | 0.4962547 | -1.5444810 | -0.1898728 | 1.6157708 | 2.3527944 |
| ENSG00000067798 | 0.4207731 | -2.7030185 | 3.642499 | 9.718523 | 0.0028685 | 0.4920083 | ENSG00000067798 | NAV3 | neuron navigator 3 | 12 | 77324641 | 78213010 | protein_coding | HGNC:15998 | 2.3957053 | -0.2215929 | 3.4456540 | 0.4742024 | 2.6657614 | 1.3733943 | 3.0778210 | 0.0151807 | -2.2821299 | -0.7176527 | 2.5343769 | 2.2019914 |
| ENSG00000133110 | 0.5475309 | -2.2669504 | 9.136463 | 9.843072 | 0.0028748 | 0.4920083 | ENSG00000133110 | POSTN | periostin | 13 | 37562583 | 37598844 | protein_coding | HGNC:16953 | 8.2441975 | 6.0771403 | 7.1872100 | 6.1845473 | 7.1009990 | 7.7770051 | 8.4469458 | 4.8067055 | 5.0540050 | 4.9356479 | 7.8777151 | 7.2026121 |
| ENSG00000118600 | 2.3848362 | 1.7562353 | 4.223217 | 9.856881 | 0.0028887 | 0.4920083 | ENSG00000118600 | RXYLT1 | ribitol xylosyltransferase 1 | 12 | 63779833 | 63809792 | protein_coding | HGNC:13530 | -1.6005904 | 0.1208111 | 1.0284539 | 2.2227072 | 3.4675183 | 2.7594405 | 3.0567474 | 2.1847208 | 1.9152880 | 2.0562849 | 3.1240033 | 1.0222982 |
| ENSG00000229698 | -6.3792969 | -8.0533180 | 2.827400 | 11.114953 | 0.0029021 | 0.4920083 | ENSG00000229698 | HLA-F | major histocompatibility complex, class I, F | HSCHR6_MHC_SSTO_CTG1 | 1029074 | 1044770 | protein_coding | HGNC:4963 | 4.7204271 | 2.8689165 | 4.8083125 | 2.9912127 | -13.2877124 | -13.2877124 | -0.8301263 | -13.2877124 | -13.2877124 | -13.2877124 | -2.4145759 | 4.1218004 |
| ENSG00000117632 | -1.1964385 | -1.1382124 | 5.132757 | 9.770912 | 0.0029693 | 0.4920083 | ENSG00000117632 | STMN1 | stathmin 1 | 1 | 25884181 | 25906991 | protein_coding | HGNC:6510 | 4.5398392 | 5.2389894 | 5.8830056 | 4.5151527 | 4.3844593 | 4.5556683 | 4.5047247 | 4.5870400 | 4.1475646 | 4.3839724 | 4.4833895 | 5.1589372 |
| ENSG00000188959 | 1.8122832 | -1.3958757 | 2.588106 | 9.216033 | 0.0029703 | 0.4920083 | ENSG00000188959 | C9orf152 | chromosome 9 open reading frame 152 | 9 | 110190048 | 110208159 | protein_coding | HGNC:31455 | 0.7833577 | -0.6292688 | -0.7990789 | -0.5447399 | 2.5528821 | 1.8921730 | 0.3644985 | -1.5695863 | -1.4828271 | -1.5255546 | 1.8569760 | -0.1408785 |
| ENSG00000205238 | 0.5352818 | 1.6226752 | 6.963199 | 9.677022 | 0.0030648 | 0.5014728 | ENSG00000205238 | SPDYE2 | speedy/RINGO cell cycle regulator family member E2 | 7 | 102551226 | 102563538 | protein_coding | HGNC:33841 | 4.5433748 | 5.7064702 | 5.7419624 | 6.3931621 | 5.9596885 | 6.4205380 | 6.5347108 | 7.4670022 | 7.1053811 | 7.2974924 | 6.3255872 | 5.7354101 |
| ENSG00000239264 | 0.9125045 | 1.3682418 | 8.548598 | 9.577159 | 0.0031846 | 0.5139604 | ENSG00000239264 | TXNDC5 | thioredoxin domain containing 5 | 6 | 7881517 | 7910788 | protein_coding | HGNC:21073 | 5.9344914 | 6.0599583 | 6.2432239 | 5.7586038 | 7.3654176 | 6.9762465 | 6.9499431 | 8.0296820 | 6.5409019 | 7.4693729 | 7.1100616 | 6.0099222 |
| ENSG00000163082 | 1.0538527 | -0.4800094 | 5.263301 | 9.539274 | 0.0032431 | 0.5139604 | ENSG00000163082 | SGPP2 | sphingosine-1-phosphate phosphatase 2 | 2 | 222424543 | 222562621 | protein_coding | HGNC:19953 | 1.9541025 | 2.6413516 | 1.5051587 | 2.2676437 | 3.6607836 | 3.2920929 | 3.1068232 | 1.7343025 | 1.7166938 | 1.7255248 | 3.3719159 | 2.1511954 |
| ENSG00000131669 | -0.6279472 | 0.9560262 | 4.975060 | 9.535509 | 0.0032585 | 0.5139604 | ENSG00000131669 | NINJ1 | ninjurin 1 | 9 | 93121496 | 93134251 | protein_coding | HGNC:7824 | 4.1197016 | 4.9307277 | 3.9037187 | 4.4123536 | 3.8445953 | 4.1690807 | 3.6271190 | 5.5107593 | 5.3032582 | 5.4107363 | 3.8976073 | 4.3948002 |
| ENSG00000157181 | -1.7276614 | 1.3939180 | 3.115654 | 9.071319 | 0.0033459 | 0.5139604 | ENSG00000157181 | ODR4 | odr-4 GPCR localization factor homolog | 1 | 186375838 | 186421378 | protein_coding | HGNC:24299 | 1.3718220 | 2.4911173 | 2.5189513 | 0.3998022 | -2.0698637 | -0.3977978 | -1.5589968 | 0.3366307 | 2.6634612 | 1.9256797 | -1.1664110 | 1.9317855 |
| ENSG00000178078 | 1.9959017 | 3.1771130 | 2.062120 | 8.077858 | 0.0034094 | 0.5139604 | ENSG00000178078 | STAP2 | signal transducing adaptor family member 2 | 19 | 4324043 | 4342786 | protein_coding | HGNC:30430 | -13.2877124 | 1.5077840 | -2.3354735 | 0.1143617 | 3.1331803 | 2.4951479 | 1.6544264 | 3.9628433 | 3.2312223 | 3.6429217 | 2.5492182 | 0.0442038 |
| ENSG00000164941 | 1.2777231 | 0.9082054 | 4.213074 | 9.428562 | 0.0034259 | 0.5139604 | ENSG00000164941 | INTS8 | integrator complex subunit 8 | 8 | 94813311 | 94881746 | protein_coding | HGNC:26048 | 2.4322659 | 2.0592085 | 2.5969809 | 2.4523456 | 2.9897955 | 2.1278640 | 3.4292551 | 2.2234578 | 3.7387651 | 3.1715342 | 2.9440224 | 2.3983657 |
| ENSG00000196361 | -1.1827544 | -4.4950525 | 2.731290 | 8.858203 | 0.0034266 | 0.5139604 | ENSG00000196361 | ELAVL3 | ELAV like RNA binding protein 3 | 19 | 11451326 | 11481046 | protein_coding | HGNC:3314 | 0.0075113 | -0.7201983 | 4.0337526 | 0.2888168 | -0.3100210 | -0.1452479 | -0.0444789 | -1.8004451 | -3.9334850 | -2.5041616 | -0.1624636 | 2.2639819 |
| ENSG00000106546 | -0.0852735 | -1.6795714 | 4.435365 | 9.372289 | 0.0034849 | 0.5139604 | ENSG00000106546 | AHR | aryl hydrocarbon receptor | 7 | 16916359 | 17346152 | protein_coding | HGNC:348 | 3.3209769 | 2.0095697 | 2.9142922 | 0.9266341 | 2.1928068 | 3.2355523 | 1.7949286 | 0.0550665 | 2.2525228 | 1.5370629 | 2.5410838 | 2.5520969 |
| ENSG00000167194 | -1.5974696 | -3.4642337 | 6.339565 | 9.329618 | 0.0035201 | 0.5139604 | ENSG00000167194 | C16orf92 | chromosome 16 open reading frame 92 | 16 | 30023198 | 30027736 | protein_coding | HGNC:26346 | 5.8508152 | 7.8474885 | 8.4419269 | 4.6135044 | 5.8516024 | 5.9741456 | 5.8158357 | 4.0873582 | 3.6926846 | 3.9034760 | 5.8821341 | 7.3669032 |
| ENSG00000223532 | -0.8669204 | 1.7295439 | 8.392943 | 9.318357 | 0.0035242 | 0.5139604 | ENSG00000223532 | HLA-B | major histocompatibility complex, class I, B | HSCHR6_MHC_COX_CTG1 | 2750417 | 2837604 | protein_coding | HGNC:4932 | 8.1749199 | 7.5773357 | 7.0150189 | 8.0032282 | 7.1484330 | 7.5031525 | 6.5889410 | 7.6806503 | 9.5634826 | 8.9096180 | 7.1277406 | 7.7580559 |
| ENSG00000105127 | 0.9292669 | 1.1317474 | 6.491037 | 9.275269 | 0.0035866 | 0.5174381 | ENSG00000105127 | AKAP8 | A-kinase anchoring protein 8 | 19 | 15353385 | 15379815 | protein_coding | HGNC:378 | 2.9437126 | 3.9320767 | 3.9891495 | 3.9219189 | 4.6838653 | 5.0911419 | 4.6154873 | 4.9364418 | 4.9269037 | 4.9316807 | 4.8125501 | 3.7547603 |
| ENSG00000171867 | -0.5475833 | -1.3226216 | 6.679954 | 9.212241 | 0.0036763 | 0.5226530 | ENSG00000171867 | PRNP | prion protein (Kanno blood group) | 20 | 4686350 | 4701590 | protein_coding | HGNC:9449 | 5.8844539 | 4.8228052 | 5.6393247 | 5.1918105 | 5.1107890 | 5.1538890 | 4.7019150 | 4.7520858 | 3.8085427 | 4.3561135 | 5.0027453 | 5.4410273 |
| ENSG00000206353 | 3.9476144 | 3.0255689 | 3.573192 | 8.425603 | 0.0037212 | 0.5226530 | ENSG00000206353 | SKIC2 | SKI2 subunit of superkiller complex | HSCHR6_MHC_QBL_CTG1 | 3215050 | 3225721 | protein_coding | HGNC:10898 | -13.2877124 | -0.8090843 | -1.6356338 | -13.2877124 | 1.9583958 | 2.7039625 | 2.3438288 | 2.3493791 | -13.2877124 | 1.3494075 | 2.3672469 | -2.1636344 |
| ENSG00000159307 | 0.0128445 | 2.5996387 | 4.378316 | 9.215278 | 0.0037531 | 0.5226530 | ENSG00000159307 | SCUBE1 | signal peptide, CUB domain and EGF like domain containing 1 | 22 | 43197280 | 43343372 | protein_coding | HGNC:13441 | 2.5770640 | 0.5589680 | -1.4344067 | -2.9144883 | -2.4922409 | 2.0911088 | -1.4236075 | 3.2945824 | 2.9665023 | 3.1398483 | 0.6814529 | 0.9897000 |
| ENSG00000105894 | -3.4351865 | -2.5099604 | 3.313532 | 8.552458 | 0.0037962 | 0.5226530 | ENSG00000105894 | PTN | pleiotrophin | 7 | 137227341 | 137343774 | protein_coding | HGNC:9630 | 0.7393375 | 2.8175162 | 4.7339339 | 2.3139290 | 0.9285591 | -0.4011718 | -1.7732843 | -0.2936931 | 1.3769566 | 0.7710446 | -0.0227035 | 3.3327769 |
| ENSG00000282725 | -2.9035895 | -2.3105444 | 3.216272 | 8.734605 | 0.0038175 | 0.5226530 | ENSG00000282725 | CORO7 | coronin 7 | HSCHR16_3_CTG1 | 56867 | 128028 | protein_coding | HGNC:26161 | 3.4578020 | 3.5934337 | 3.3461760 | 4.2193872 | 2.8012899 | -13.2877124 | 3.2201310 | 2.0972963 | 2.8013795 | 2.4918703 | 2.4409033 | 3.6964270 |
| ENSG00000120093 | 1.2162365 | 1.0671698 | 6.786901 | 9.037559 | 0.0039425 | 0.5306809 | ENSG00000120093 | HOXB3 | homeobox B3 | 17 | 48548870 | 48604912 | protein_coding | HGNC:5114 | 3.5191350 | 3.9816905 | 3.2680882 | 4.6094607 | 5.3652871 | 5.3842117 | 5.6260476 | 5.0830301 | 5.1895936 | 5.1372957 | 5.4634884 | 3.9379959 |
| ENSG00000110092 | -0.4897887 | -1.1322686 | 6.476408 | 8.977775 | 0.0040387 | 0.5306809 | ENSG00000110092 | CCND1 | cyclin D1 | 11 | 69641156 | 69654474 | protein_coding | HGNC:1582 | 4.8734788 | 3.8532995 | 5.2740465 | 5.5658455 | 3.7777528 | 4.4691258 | 4.7999711 | 4.0897546 | 3.6104205 | 3.8699040 | 4.4087356 | 5.0204644 |
| ENSG00000172156 | 2.7782768 | 0.2211919 | 2.484032 | 8.216983 | 0.0040806 | 0.5306809 | ENSG00000172156 | CCL11 | C-C motif chemokine ligand 11 | 17 | 34285742 | 34288334 | protein_coding | HGNC:10610 | 1.0542414 | 1.4758859 | -13.2877124 | -13.2877124 | 2.9629844 | 3.9333188 | 3.3470059 | 1.2409340 | 0.1030007 | 0.7813681 | 3.4703204 | 0.2804718 |
| ENSG00000230456 | 3.4002493 | -3.9792615 | 2.014752 | 7.917826 | 0.0041111 | 0.5306809 | ENSG00000230456 | DDR1 | discoidin domain receptor tyrosine kinase 1 | HSCHR6_MHC_DBB_CTG1 | 2137270 | 2156466 | protein_coding | HGNC:2730 | -1.7213586 | -13.2877124 | 1.3351373 | -13.2877124 | 2.7205608 | -1.7121590 | 1.7968286 | -13.2877124 | -13.2877124 | -13.2877124 | 1.7895274 | -0.5010047 |
| ENSG00000060982 | 0.2159561 | -2.8459952 | 4.016417 | 8.835321 | 0.0041804 | 0.5306809 | ENSG00000060982 | BCAT1 | branched chain amino acid transaminase 1 | 12 | 24810024 | 24949101 | protein_coding | HGNC:976 | 3.3452773 | 1.7144816 | 3.7687979 | 3.4843186 | 2.2373551 | 1.5969866 | 1.1532839 | -1.4525620 | -1.9075598 | -1.6621976 | 1.7318526 | 3.2580343 |
| ENSG00000183160 | -0.4430935 | -2.2207671 | 4.459441 | 8.889406 | 0.0042236 | 0.5306809 | ENSG00000183160 | TMEM119 | transmembrane protein 119 | 12 | 108589851 | 108598320 | protein_coding | HGNC:27884 | 3.5530032 | 2.2963490 | 3.7451696 | 3.1315603 | 2.9899931 | 1.8704062 | 4.2838387 | 0.3372692 | 2.2913018 | 1.6225415 | 3.3729490 | 3.2788180 |
| ENSG00000135925 | -0.6605472 | 2.1370536 | 3.419350 | 8.788075 | 0.0042563 | 0.5306809 | ENSG00000135925 | WNT10A | Wnt family member 10A | 2 | 218880852 | 218899581 | protein_coding | HGNC:13829 | -13.2877124 | 1.8751525 | 1.9020767 | 1.2295818 | -0.4954732 | 1.0499653 | 1.1402741 | 3.4874674 | 3.6137604 | 3.5519954 | 0.7323526 | 1.2855508 |
| ENSG00000185274 | 1.4382495 | 1.5112903 | 5.438174 | 8.841252 | 0.0042841 | 0.5306809 | ENSG00000185274 | GALNT17 | polypeptide N-acetylgalactosaminyltransferase 17 | 7 | 71132144 | 71713600 | protein_coding | HGNC:16347 | 2.8058659 | 2.5606352 | 1.6740403 | 1.5852621 | 4.1792699 | 3.9062340 | 2.5208605 | 3.8130108 | 3.4903143 | 3.6606663 | 3.6948576 | 2.2543026 |
| ENSG00000133636 | 2.4028535 | -2.3503023 | 2.498466 | 8.064124 | 0.0043091 | 0.5306809 | ENSG00000133636 | NTS | neurotensin | 12 | 85874295 | 85882992 | protein_coding | HGNC:8038 | -13.2877124 | 1.7380808 | 1.8523109 | -1.2186151 | 2.1191875 | 2.4660327 | 4.2505179 | -13.2877124 | 0.1168531 | -0.8830138 | 3.2682278 | 0.8829339 |
| ENSG00000167244 | 1.9601216 | -2.1441333 | 5.321336 | 8.828556 | 0.0043145 | 0.5306809 | ENSG00000167244 | IGF2 | insulin like growth factor 2 | 11 | 2129112 | 2158391 | protein_coding | HGNC:5466 | 0.4004341 | 3.1863083 | -0.0111517 | 1.3030665 | 4.3198594 | 4.5680590 | 1.6589326 | 1.0153256 | -0.0300756 | 0.5853126 | 3.9650028 | 1.7951976 |
| ENSG00000067715 | -1.4425793 | -1.5782033 | 3.501353 | 8.845578 | 0.0043147 | 0.5306809 | ENSG00000067715 | SYT1 | synaptotagmin 1 | 12 | 78863993 | 79452008 | protein_coding | HGNC:11509 | 2.8693521 | 1.4987048 | 1.2027901 | 1.7701808 | 2.2100709 | 0.3188710 | 1.6409332 | 0.3109915 | -0.7535627 | -0.1252447 | 1.5838414 | 1.9860531 |
| ENSG00000139514 | 0.8592398 | 1.1491500 | 6.788696 | 8.794239 | 0.0043508 | 0.5306809 | ENSG00000139514 | SLC7A1 | solute carrier family 7 member 1 | 13 | 29509414 | 29595688 | protein_coding | HGNC:11057 | 2.9830047 | 2.9763361 | 2.8522050 | 2.7226813 | 4.1259027 | 4.1753085 | 3.1206076 | 4.2441922 | 3.8675083 | 4.0681094 | 3.8817912 | 2.8874364 |
| ENSG00000136840 | -0.5032231 | 0.8636157 | 4.901376 | 8.763910 | 0.0044305 | 0.5333368 | ENSG00000136840 | ST6GALNAC4 | ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 | 9 | 127907886 | 127917041 | protein_coding | HGNC:17846 | 3.9854092 | 4.7184420 | 4.2579444 | 3.8600890 | 3.1431411 | 3.8543598 | 3.9298137 | 5.1790448 | 4.7297382 | 4.9718125 | 3.6832597 | 4.2444883 |
| ENSG00000278823 | 6.3119476 | 7.6548383 | 2.217223 | 10.248976 | 0.0044924 | 0.5333368 | ENSG00000278823 | BMERB1 | bMERB domain containing 1 | HSCHR16_1_CTG1 | 1092272 | 1283041 | protein_coding | HGNC:19213 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 1.6617756 | -13.2877124 | 1.2586950 | 2.2111546 | 1.4784153 | 1.8908128 | 0.8893302 | -13.2877124 |
| ENSG00000186532 | 0.4962295 | 2.0078896 | 3.464643 | 8.739211 | 0.0045052 | 0.5333368 | ENSG00000186532 | SMYD4 | SET and MYND domain containing 4 | 17 | 1779485 | 1830634 | protein_coding | HGNC:21067 | 2.2614869 | 0.0658756 | -0.8470612 | 3.0647672 | 1.8739718 | 2.8439163 | 1.5278891 | 3.0188569 | 1.8074600 | 2.5367375 | 2.1941608 | 1.8840919 |
| ENSG00000115232 | 0.7133425 | -0.8096671 | 4.644826 | 8.685092 | 0.0045805 | 0.5333368 | ENSG00000115232 | ITGA4 | integrin subunit alpha 4 | 2 | 181457202 | 181538940 | protein_coding | HGNC:6140 | 2.8743791 | 2.1704068 | 1.9110776 | 1.9611051 | 2.4696886 | 2.2772707 | 3.6404407 | 1.9850843 | -0.0171645 | 1.3065632 | 2.9296196 | 2.2845793 |
| ENSG00000065911 | -0.2577847 | 0.8799845 | 5.500479 | 8.661309 | 0.0046033 | 0.5333368 | ENSG00000065911 | MTHFD2 | methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase | 2 | 74186172 | 74217565 | protein_coding | HGNC:7434 | 2.6908884 | 3.4455534 | 3.2926177 | 3.3834642 | 2.9481603 | 3.1178863 | 3.0898652 | 3.4742428 | 3.9750269 | 3.7462555 | 3.0538620 | 3.2321407 |
| ENSG00000255220 | 1.1915160 | -3.8220766 | 2.303039 | 8.479620 | 0.0046624 | 0.5333368 | ENSG00000255220 | DDX18P5 | 11 | 130295641 | 130296946 | processed_pseudogene | HGNC:33968 | -0.3011628 | 0.7991536 | 2.2419966 | 1.4931139 | 3.0232097 | 2.5403219 | 2.0594574 | -1.9200355 | -13.2877124 | -2.9194897 | 2.5941685 | 1.3358765 | |
| ENSG00000182484 | -0.4192397 | -3.1405345 | 2.658094 | 8.178289 | 0.0046996 | 0.5333368 | ENSG00000182484 | WASH6P | X | 156020826 | 156025710 | protein_coding | HGNC:31685 | 2.4356838 | 3.0032048 | 3.4875002 | 1.8661104 | 1.6614030 | 1.6455094 | 1.4731032 | -0.7158792 | -3.7637780 | -1.5511984 | 1.5958230 | 2.8221994 | |
| ENSG00000142227 | -1.3424309 | -0.9787249 | 4.772638 | 8.615105 | 0.0047164 | 0.5333368 | ENSG00000142227 | EMP3 | epithelial membrane protein 3 (MAM blood group) | 19 | 48321310 | 48330559 | protein_coding | HGNC:3335 | 6.5167830 | 5.6241548 | 6.5969985 | 5.5842303 | 4.9795830 | 4.3549652 | 5.2744397 | 5.4726872 | 4.8015878 | 5.1758128 | 4.9183605 | 6.1582082 |
| ENSG00000244257 | -8.0873902 | 0.5215113 | 3.573284 | 9.529296 | 0.0047365 | 0.5333368 | ENSG00000244257 | PKD1P1 | 16 | 16310341 | 16334190 | transcribed_unprocessed_pseudogene | HGNC:30065 | -13.2877124 | 1.1539609 | 1.0153791 | 1.1512737 | -13.2877124 | -13.2877124 | -13.2877124 | 1.0240891 | 1.4181597 | 1.2345375 | -13.2877124 | 0.6932911 | |
| ENSG00000143340 | 3.7717958 | 3.3416632 | 1.755619 | 7.863298 | 0.0047701 | 0.5333368 | ENSG00000143340 | FAM163A | family with sequence similarity 163 member A | 1 | 179743291 | 179816198 | protein_coding | HGNC:28274 | -2.2317725 | -3.5439214 | -13.2877124 | -13.2877124 | -0.3212538 | 0.4881715 | 1.1625987 | -0.2634834 | 0.2827660 | 0.0353417 | 0.5661309 | -3.7425790 |
| ENSG00000187713 | -0.1135844 | 2.6068505 | 3.655239 | 8.530467 | 0.0048489 | 0.5372711 | ENSG00000187713 | TMEM203 | transmembrane protein 203 | 9 | 137204082 | 137205648 | protein_coding | HGNC:28217 | 2.4343589 | 1.9999340 | 0.4345999 | -0.0500856 | 0.9635829 | 2.2185654 | 1.4473433 | 2.0051772 | 5.1190728 | 4.2767778 | 1.6371474 | 1.5512049 |
| ENSG00000163528 | 2.3521660 | -0.9450375 | 1.787416 | 7.332708 | 0.0049167 | 0.5372711 | ENSG00000163528 | CHCHD4 | coiled-coil-helix-coiled-coil-helix domain containing 4 | 3 | 14112077 | 14124870 | protein_coding | HGNC:26467 | 0.5324387 | -13.2877124 | -0.1459501 | -0.4791564 | 1.9946843 | 1.2049051 | 2.6819435 | -2.0857355 | -1.0005887 | -1.4434538 | 2.0826695 | -0.3828646 |
| ENSG00000273645 | -0.6002739 | -8.0828702 | 3.360492 | 8.920710 | 0.0049497 | 0.5372711 | ENSG00000273645 | KBTBD11 | kelch repeat and BTB domain containing 11 | HSCHR8_8_CTG1 | 157254 | 190312 | protein_coding | HGNC:29104 | 1.0362156 | 0.3390017 | 1.0169106 | 0.3113148 | 1.2807408 | 0.2038927 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 0.2556167 | 0.7181183 |
| ENSG00000198121 | -0.7168839 | -2.4670976 | 4.023425 | 8.485271 | 0.0049761 | 0.5372711 | ENSG00000198121 | LPAR1 | lysophosphatidic acid receptor 1 | 9 | 110873263 | 111038470 | protein_coding | HGNC:3166 | 3.8959840 | 0.9615759 | 3.2173736 | 3.3384340 | 2.2770680 | 2.6102122 | 2.1111021 | -0.4297877 | 1.3106467 | 0.6883585 | 2.3479553 | 3.1799271 |
| ENSG00000107105 | -3.3898338 | -2.0166357 | 2.223070 | 7.476537 | 0.0050623 | 0.5372711 | ENSG00000107105 | ELAVL2 | ELAV like RNA binding protein 2 | 9 | 23690104 | 23826337 | protein_coding | HGNC:3313 | -0.2843561 | 1.5128514 | 1.3358531 | 1.1809842 | -13.2877124 | -3.3432492 | -1.6506710 | -0.7396949 | -0.5498735 | -0.6416645 | -2.8464105 | 1.0817493 |
| ENSG00000126709 | -3.0532196 | 0.4621675 | 6.546245 | 8.429517 | 0.0050875 | 0.5372711 | ENSG00000126709 | IFI6 | interferon alpha inducible protein 6 | 1 | 27666064 | 27672212 | protein_coding | HGNC:4054 | 6.7649216 | 6.8999619 | 7.2060505 | 7.9885737 | 3.9509188 | 4.2481603 | 4.7646217 | 3.9354840 | 8.6913204 | 7.7437539 | 4.3610826 | 7.2987742 |
| ENSG00000225201 | -9.6771120 | -7.1202959 | 4.311897 | 8.939886 | 0.0051094 | 0.5372711 | ENSG00000225201 | HLA-E | major histocompatibility complex, class I, E | HSCHR6_MHC_MCF_CTG1 | 1833523 | 1838261 | protein_coding | HGNC:4962 | 3.0165662 | 5.3436799 | 0.6557530 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -0.2239651 | -1.2237966 | -13.2877124 | 3.6517861 |
| ENSG00000286169 | -1.6536411 | -1.4970655 | 3.871740 | 8.431268 | 0.0051275 | 0.5372711 | ENSG00000286169 | NA | NA | NA | NA | NA | NA | NA | 1.6491303 | 2.9869213 | 1.8410142 | 2.2223662 | 0.6716122 | 0.2897979 | 0.4060294 | 0.6515050 | 0.2500375 | 0.4646913 | 0.4647916 | 2.2715338 |
| ENSG00000198857 | 2.1576446 | 0.9991505 | 3.328997 | 8.307867 | 0.0052152 | 0.5372711 | ENSG00000198857 | HSD3BP5 | 1 | 119601340 | 119609250 | transcribed_unprocessed_pseudogene | HGNC:5223 | 0.3781365 | 1.7633946 | 2.2827559 | 1.9477570 | 2.9651068 | 3.6332528 | 4.8179247 | 2.7350696 | 2.7492848 | 2.7421947 | 4.0126637 | 1.7461442 | |
| ENSG00000148773 | 4.1411956 | 2.8717052 | 1.864692 | 7.629740 | 0.0052863 | 0.5372711 | ENSG00000148773 | MKI67 | marker of proliferation Ki-67 | 10 | 128096659 | 128126423 | protein_coding | HGNC:7107 | -13.2877124 | -13.2877124 | -3.9811494 | -4.7233342 | -2.1342110 | -0.7242086 | -0.9135015 | -1.7538863 | -4.2488757 | -2.5182919 | -1.1371019 | -5.3021835 |
| ENSG00000130707 | -0.3311669 | 1.1549902 | 6.153462 | 8.291608 | 0.0053647 | 0.5372711 | ENSG00000130707 | ASS1 | argininosuccinate synthase 1 | 9 | 130444961 | 130501274 | protein_coding | HGNC:758 | 4.2200809 | 5.5895701 | 5.2451732 | 5.1509275 | 5.1928725 | 5.2957688 | 4.9156257 | 6.0974921 | 6.9932696 | 6.6138161 | 5.1435110 | 5.1318253 |
| ENSG00000276886 | -2.6899556 | -2.5870446 | 4.290872 | 8.294713 | 0.0053714 | 0.5372711 | ENSG00000276886 | GREM1 | gremlin 1, DAN family BMP antagonist | HSCHR15_4_CTG8 | 4932598 | 4949251 | protein_coding | HGNC:2001 | 3.0661596 | 0.9912140 | 2.0376939 | 3.6722940 | 1.0539315 | -13.2877124 | 0.5124535 | 0.7583586 | -0.9191868 | 0.1508014 | 0.2235276 | 2.7664887 |
| ENSG00000115271 | -2.9701193 | -7.6220459 | 2.572808 | 7.919253 | 0.0053820 | 0.5372711 | ENSG00000115271 | GCA | grancalcin | 2 | 162318840 | 162371595 | protein_coding | HGNC:15990 | -13.2877124 | 2.0720965 | 4.1108016 | 3.6581202 | 1.2981574 | -13.2877124 | 1.5997529 | -13.2877124 | -13.2877124 | -13.2877124 | 0.8718854 | 3.0919758 |
| ENSG00000185885 | -3.2153979 | -1.2902141 | 2.620727 | 7.471327 | 0.0054806 | 0.5372711 | ENSG00000185885 | IFITM1 | interferon induced transmembrane protein 1 | 11 | 310041 | 315272 | protein_coding | HGNC:5412 | 4.7452723 | 3.4459628 | 3.8770148 | 3.9463917 | 2.2042497 | -0.7872613 | -13.2877124 | 2.8010442 | 2.3317127 | 2.5853801 | 0.7901857 | 4.0837958 |
| ENSG00000124194 | -0.7197857 | 1.0659331 | 3.399741 | 8.240237 | 0.0055321 | 0.5372711 | ENSG00000124194 | GDAP1L1 | ganglioside induced differentiation associated protein 1 like 1 | 20 | 44247099 | 44280947 | protein_coding | HGNC:4213 | 1.6167012 | 1.2494775 | 2.6281276 | 1.9437417 | 0.7152371 | 0.5389880 | 1.2516197 | 2.7336450 | 2.4341908 | 2.5916737 | 0.8681051 | 1.9517310 |
| ENSG00000115461 | -0.3440946 | -2.2802282 | 9.502659 | 8.198192 | 0.0055765 | 0.5372711 | ENSG00000115461 | IGFBP5 | insulin like growth factor binding protein 5 | 2 | 216672105 | 216695549 | protein_coding | HGNC:5474 | 6.9579387 | 5.8913154 | 8.0459362 | 5.5989031 | 6.3705350 | 6.7711289 | 6.8488277 | 4.9294871 | 4.2850987 | 4.6429753 | 6.6782142 | 6.9554354 |
| ENSG00000224299 | 3.3112178 | 3.0643511 | 2.810768 | 7.322954 | 0.0055898 | 0.5372711 | ENSG00000224299 | MTATP6P16 | 2 | 201550524 | 201551049 | unprocessed_pseudogene | HGNC:52061 | 2.4318572 | -13.2877124 | -13.2877124 | 2.9712443 | 5.7786154 | 5.2040057 | 3.1741801 | 4.1495422 | 5.0932975 | 4.6972528 | 5.0701403 | 1.7266351 | |
| ENSG00000157227 | -0.3499503 | -1.4960093 | 8.501829 | 8.177798 | 0.0056252 | 0.5372711 | ENSG00000157227 | MMP14 | matrix metallopeptidase 14 | 14 | 22836560 | 22849041 | protein_coding | HGNC:7160 | 8.7053744 | 7.2502256 | 8.2216321 | 7.6390031 | 8.2898170 | 7.6362851 | 7.6695244 | 6.9158467 | 6.1210504 | 6.5725029 | 7.8978446 | 8.0600275 |
| ENSG00000166428 | -0.1576446 | 0.7080543 | 7.265780 | 8.168691 | 0.0056476 | 0.5372711 | ENSG00000166428 | PLD4 | phospholipase D family member 4 | 14 | 104924713 | 104937761 | protein_coding | HGNC:23792 | 5.4874368 | 5.3792278 | 5.6161975 | 5.2143918 | 5.5328461 | 4.9082426 | 5.3011944 | 6.0656408 | 6.1470666 | 6.1069280 | 5.2699600 | 5.4317944 |
| ENSG00000168874 | 0.5826446 | 2.6004981 | 3.887231 | 8.200696 | 0.0056535 | 0.5372711 | ENSG00000168874 | ATOH8 | atonal bHLH transcription factor 8 | 2 | 85751344 | 85791383 | protein_coding | HGNC:24126 | -3.2598893 | 0.3330561 | -1.9350840 | 0.8615799 | 0.4157003 | -0.9984398 | 1.4134560 | 2.4142863 | 2.8833764 | 2.6678135 | 0.5843956 | -0.2164989 |
| ENSG00000111325 | 0.7150853 | -0.4538740 | 6.732948 | 8.139272 | 0.0057198 | 0.5372711 | ENSG00000111325 | OGFOD2 | 2-oxoglutarate and iron dependent oxygenase domain containing 2 | 12 | 122974580 | 122980043 | protein_coding | HGNC:25823 | 6.0191137 | 4.9373515 | 5.8474802 | 5.9192992 | 6.5929843 | 6.2837616 | 6.6718406 | 5.6030428 | 4.9581748 | 5.3163438 | 6.5256790 | 5.7387095 |
| ENSG00000115325 | 1.9038516 | 1.8435781 | 2.731614 | 7.854917 | 0.0057296 | 0.5372711 | ENSG00000115325 | DOK1 | docking protein 1 | 2 | 74549026 | 74557551 | protein_coding | HGNC:2990 | 1.0880059 | -0.5306766 | 0.1066632 | 0.5253473 | 1.9598744 | 2.6416306 | 2.4500948 | 2.2614273 | 2.5954669 | 2.4380935 | 2.3780646 | 0.4152297 |
| ENSG00000116127 | -1.5533523 | -0.3369005 | 3.597220 | 8.147531 | 0.0057311 | 0.5372711 | ENSG00000116127 | ALMS1 | ALMS1 centrosome and basal body associated protein | 2 | 73385758 | 73625166 | protein_coding | HGNC:428 | 4.2684268 | 0.7660311 | 0.0418051 | 1.0185188 | 0.6615772 | -1.6057976 | -0.3094256 | -0.5770738 | -0.0020703 | -0.2611129 | -0.1427738 | 2.5866281 |
| ENSG00000183426 | 0.9995875 | 1.8865266 | 4.187808 | 8.155409 | 0.0057663 | 0.5372711 | ENSG00000183426 | NPIPA1 | nuclear pore complex interacting protein family member A1 | 16 | 14922802 | 14952060 | protein_coding | HGNC:7909 | 0.7604432 | 1.0847011 | 0.8036139 | 2.9398987 | 2.6861520 | 2.1317037 | 3.3285952 | 2.2888083 | 4.3073312 | 3.6255737 | 2.7980238 | 1.7261760 |
| ENSG00000153132 | -0.9154202 | -7.8468824 | 3.051841 | 8.484347 | 0.0058523 | 0.5386197 | ENSG00000153132 | CLGN | calmegin | 4 | 140388453 | 140427661 | protein_coding | HGNC:2060 | 2.9160938 | -0.8563245 | 2.1502045 | 1.2577776 | 0.0457980 | 1.4545349 | 1.2666384 | -13.2877124 | -13.2877124 | -13.2877124 | 1.0423964 | 1.9001937 |
| ENSG00000174989 | 1.0338996 | 0.6027263 | 5.141332 | 8.089743 | 0.0058611 | 0.5386197 | ENSG00000174989 | FBXW8 | F-box and WD repeat domain containing 8 | 12 | 116910950 | 117032498 | protein_coding | HGNC:13597 | 1.7929220 | 2.1681908 | 2.0913312 | 1.8283200 | 2.8563127 | 3.3794470 | 3.3043901 | 2.7490678 | 2.7447805 | 2.7469256 | 3.1978412 | 1.9793299 |
| ENSG00000162981 | -2.2723692 | -2.1291087 | 2.598383 | 7.650263 | 0.0059172 | 0.5400730 | ENSG00000162981 | LRATD1 | LRAT domain containing 1 | 2 | 14632700 | 14650814 | protein_coding | HGNC:20743 | -0.4671804 | 0.0142839 | 1.3068210 | 0.6321630 | -2.0473802 | -0.9297756 | -2.1482825 | -1.6503992 | -1.5804482 | -1.6149998 | -1.5959048 | 0.5253603 |
| ENSG00000213995 | 1.0323194 | 1.0440025 | 4.495407 | 8.031560 | 0.0060439 | 0.5469301 | ENSG00000213995 | NAXD | NAD(P)HX dehydratase | 13 | 110615545 | 110639996 | protein_coding | HGNC:25576 | 2.0919601 | 2.0151536 | 2.7094726 | 2.2390127 | 3.4966269 | 3.6249922 | 3.1173526 | 3.2710726 | 3.4160448 | 3.3453789 | 3.4286270 | 2.2903557 |
| ENSG00000272670 | 1.8272329 | 3.6870417 | 2.850757 | 7.327093 | 0.0060738 | 0.5469301 | ENSG00000272670 | DOC2B | double C2 domain beta | HSCHR17_1_CTG1 | 82789 | 120568 | protein_coding | HGNC:2986 | -13.2877124 | -0.5757250 | -1.0360229 | -2.7795512 | -13.2877124 | -3.0981596 | 0.9847446 | 2.5152414 | 0.5533929 | 1.8448809 | -0.5174332 | -1.6166623 |
| ENSG00000120129 | -0.4606345 | 0.6218394 | 5.853472 | 7.980226 | 0.0061299 | 0.5483027 | ENSG00000120129 | DUSP1 | dual specificity phosphatase 1 | 5 | 172768096 | 172771195 | protein_coding | HGNC:3064 | 4.7913006 | 4.2313018 | 4.5085005 | 4.6282234 | 4.3111723 | 4.3389016 | 3.9610596 | 5.0470521 | 5.3139277 | 5.1866519 | 4.2136599 | 4.5540387 |
| ENSG00000122783 | -0.3216866 | 1.7337195 | 6.397365 | 7.927586 | 0.0062697 | 0.5570907 | ENSG00000122783 | CYREN | cell cycle regulator of NHEJ | 7 | 135092363 | 135170795 | protein_coding | HGNC:22432 | 5.8935846 | 4.6357275 | 4.1962949 | 6.5871268 | 5.1863497 | 4.6546591 | 6.0358283 | 7.6912957 | 7.2691254 | 7.4955980 | 5.4060989 | 5.6350639 |
| ENSG00000281900 | 0.2852229 | -8.3000437 | 3.902583 | 8.267255 | 0.0063424 | 0.5593817 | ENSG00000281900 | KLHL5P1 | HSCHR22_1_CTG7 | 163262 | 165936 | processed_pseudogene | HGNC:56977 | 2.7578735 | 3.3825789 | -13.2877124 | 3.8913937 | 3.7909802 | 3.4615448 | 2.9820360 | -13.2877124 | -13.2877124 | -13.2877124 | 3.4488624 | 3.0014953 | |
| ENSG00000103888 | -0.1287963 | 1.2392526 | 4.229058 | 7.872498 | 0.0065015 | 0.5593817 | ENSG00000103888 | CEMIP | cell migration inducing hyaluronidase 1 | 15 | 80779343 | 80951776 | protein_coding | HGNC:29213 | 2.9108894 | 2.9589445 | 3.7822173 | 3.2826603 | 2.5088751 | 1.7801887 | 3.7416322 | 3.2015006 | 2.6469483 | 2.9507073 | 2.9070831 | 3.2774651 |
| ENSG00000064205 | -2.8685572 | -4.3726243 | 3.710801 | 7.497684 | 0.0065068 | 0.5593817 | ENSG00000064205 | CCN5 | cellular communication network factor 5 | 20 | 44714844 | 44728509 | protein_coding | HGNC:12770 | 5.3744710 | -2.3287247 | 3.5286054 | 1.8792086 | 0.3142870 | -0.3020803 | 0.9658678 | -1.1872012 | -0.7763204 | -0.9671826 | 0.4178185 | 3.8304003 |
| ENSG00000152049 | -0.4907763 | -3.5285367 | 4.588616 | 7.786008 | 0.0065747 | 0.5593817 | ENSG00000152049 | KCNE4 | potassium voltage-gated channel subfamily E regulatory subunit 4 | 2 | 223052190 | 223198399 | protein_coding | HGNC:6244 | 4.4882856 | 0.9602225 | 1.6524374 | 3.4377591 | 2.4473872 | 2.4489311 | 2.9917424 | -0.1361218 | -1.0489703 | -0.5215200 | 2.6529628 | 3.2618946 |
| ENSG00000168140 | 0.4957420 | 1.3128497 | 6.340351 | 7.808569 | 0.0066015 | 0.5593817 | ENSG00000168140 | VASN | vasorin | 16 | 4371848 | 4383538 | protein_coding | HGNC:18517 | 4.0384187 | 3.9736650 | 3.8440748 | 4.0563182 | 4.0665144 | 4.9871198 | 4.6110800 | 5.8158716 | 4.5959001 | 5.3311713 | 4.6030613 | 3.9804878 |
| ENSG00000163840 | -1.6317844 | 0.0871460 | 4.180782 | 7.799149 | 0.0066920 | 0.5593817 | ENSG00000163840 | DTX3L | deltex E3 ubiquitin ligase 3L | 3 | 122564338 | 122575203 | protein_coding | HGNC:30323 | 1.6165200 | 1.7892806 | 1.5588603 | 1.0983980 | -0.0002308 | -1.2201503 | 1.6459091 | 1.3233274 | 1.9368249 | 1.6624443 | 0.6036052 | 1.5373145 |
| ENSG00000138161 | 0.1048698 | 2.3166313 | 3.478085 | 7.773815 | 0.0067270 | 0.5593817 | ENSG00000138161 | CUZD1 | CUB and zona pellucida like domains 1 | 10 | 122832158 | 122846175 | protein_coding | HGNC:17937 | 1.4895881 | 2.4687175 | 1.0563671 | -1.3968553 | -0.3819982 | 2.4255901 | 1.0686302 | 3.4214639 | 3.7306883 | 3.5843451 | 1.4572092 | 1.4333665 |
| ENSG00000198108 | 0.2281801 | -2.3076672 | 4.104989 | 7.762610 | 0.0067477 | 0.5593817 | ENSG00000198108 | CHSY3 | chondroitin sulfate synthase 3 | 5 | 129904465 | 130186634 | protein_coding | HGNC:24293 | 2.7003063 | 0.7128678 | 2.2049420 | 1.5493769 | 2.4064749 | 2.0465560 | 2.4283844 | 0.3821393 | -2.0327133 | -0.3699040 | 2.3041083 | 1.9704786 |
| ENSG00000136960 | -0.1887162 | -2.6366862 | 6.907648 | 7.754885 | 0.0067590 | 0.5593817 | ENSG00000136960 | ENPP2 | ectonucleotide pyrophosphatase/phosphodiesterase 2 | 8 | 119557086 | 119673453 | protein_coding | HGNC:3357 | 6.4658854 | 3.6619388 | 6.0863053 | 5.2411649 | 5.6054766 | 5.9783241 | 4.7249055 | 3.6217326 | 1.9339446 | 3.0117427 | 5.5254184 | 5.6922316 |
| ENSG00000138771 | 1.4678320 | -0.1744853 | 4.104861 | 7.779515 | 0.0067780 | 0.5593817 | ENSG00000138771 | SHROOM3 | shroom family member 3 | 4 | 76435229 | 76783253 | protein_coding | HGNC:30422 | 3.2855031 | 0.1454688 | 0.8938623 | 0.3201473 | 2.3324785 | 2.7770205 | 0.5931692 | 0.5478249 | 0.2087208 | 0.3882127 | 2.1591564 | 1.8035755 |
| ENSG00000184058 | -5.0189108 | -1.1756132 | 2.866165 | 7.434795 | 0.0067887 | 0.5593817 | ENSG00000184058 | TBX1 | T-box transcription factor 1 | 22 | 19756703 | 19783593 | protein_coding | HGNC:11592 | 2.6998763 | 3.1837880 | -0.7697355 | 1.1900724 | -1.5033638 | -1.8335211 | -13.2877124 | 1.7855413 | 0.0124700 | 1.1558007 | -2.2437535 | 2.2057466 |
| ENSG00000111358 | -1.4253807 | -6.3784012 | 1.718656 | 7.526601 | 0.0067958 | 0.5593817 | ENSG00000111358 | GTF2H3 | general transcription factor IIH subunit 3 | 12 | 123633739 | 123662604 | protein_coding | HGNC:4657 | 3.1168255 | 1.3015736 | 1.9421470 | 1.0753019 | 2.0157480 | -1.5617242 | 1.4401331 | -13.2877124 | -13.2877124 | -13.2877124 | 1.2420653 | 2.0950535 |
| ENSG00000088930 | -0.4650165 | -1.2297874 | 4.855927 | 7.717612 | 0.0068952 | 0.5632039 | ENSG00000088930 | XRN2 | 5’-3’ exoribonuclease 2 | 20 | 21303331 | 21389825 | protein_coding | HGNC:12836 | 3.0878577 | 3.0251770 | 2.9721208 | 3.2270306 | 2.4291858 | 2.7337463 | 3.0062833 | 1.8446885 | 1.8961118 | 1.8706295 | 2.7421945 | 3.0812305 |
| ENSG00000181333 | -7.4737324 | -1.4482006 | 2.536125 | 8.443966 | 0.0069546 | 0.5632039 | ENSG00000181333 | HEPHL1 | hephaestin like 1 | 11 | 94021354 | 94114208 | protein_coding | HGNC:30477 | -0.8528027 | -0.7870024 | 1.9319806 | -0.2716789 | -13.2877124 | -13.2877124 | -13.2877124 | -0.6200553 | -1.5324576 | -1.0052986 | -13.2877124 | 0.5304194 |
| ENSG00000085117 | -0.2662758 | 1.3667669 | 5.215825 | 7.673936 | 0.0070270 | 0.5632039 | ENSG00000085117 | CD82 | CD82 molecule | 11 | 44564427 | 44620363 | protein_coding | HGNC:6210 | 4.2258897 | 4.5837379 | 3.6867431 | 4.0516440 | 4.0630159 | 4.7317019 | 4.3473892 | 5.7061602 | 5.6353995 | 5.6712135 | 4.4068999 | 4.1729651 |
| ENSG00000145819 | -0.0118569 | 1.5655213 | 4.261982 | 7.691794 | 0.0070410 | 0.5632039 | ENSG00000145819 | ARHGAP26 | Rho GTPase activating protein 26 | 5 | 142770377 | 143229011 | protein_coding | HGNC:17073 | 1.7146623 | 2.9278113 | 0.4501001 | 1.9413452 | 2.4672028 | 1.7574317 | 0.8702653 | 4.1726519 | 4.5046871 | 4.3482007 | 1.8397798 | 2.0088562 |
| ENSG00000113083 | -0.2856976 | -1.2573430 | 5.530297 | 7.660545 | 0.0070521 | 0.5632039 | ENSG00000113083 | LOX | lysyl oxidase | 5 | 122063195 | 122078413 | protein_coding | HGNC:6664 | 3.9319778 | 2.8331888 | 3.4763376 | 4.1512684 | 3.5757846 | 2.8712286 | 3.5829729 | 2.5180977 | 1.8351221 | 2.2166535 | 3.3796321 | 3.6805494 |
| ENSG00000169071 | 0.3176487 | -1.9344958 | 3.742487 | 7.648259 | 0.0071141 | 0.5635069 | ENSG00000169071 | ROR2 | receptor tyrosine kinase like orphan receptor 2 | 9 | 91563091 | 91950228 | protein_coding | HGNC:10257 | 1.6988337 | 1.4198641 | 0.5877596 | 1.6867358 | 1.6565312 | 2.1715777 | 1.5555978 | 0.0855593 | -1.2215021 | -0.4247506 | 1.8206608 | 1.4119919 |
| ENSG00000186994 | 0.8607001 | -0.9450879 | 3.513874 | 7.664364 | 0.0071399 | 0.5635069 | ENSG00000186994 | KANK3 | KN motif and ankyrin repeat domains 3 | 19 | 8322584 | 8343262 | protein_coding | HGNC:24796 | 2.0711150 | 1.1719677 | 1.2557044 | 1.8264138 | 2.1279092 | 2.6282447 | 2.4278244 | 0.8131101 | 0.0837498 | 0.4940387 | 2.4091088 | 1.6310670 |
| ENSG00000148341 | 0.5797894 | 1.3760901 | 4.522438 | 7.634612 | 0.0071856 | 0.5637960 | ENSG00000148341 | SH3GLB2 | SH3 domain containing GRB2 like, endophilin B2 | 9 | 129007036 | 129028331 | protein_coding | HGNC:10834 | 2.0881820 | 3.1133111 | 2.2803577 | 2.5744673 | 4.0683938 | 3.3462966 | 3.1754815 | 4.2468183 | 4.6832958 | 4.4815011 | 3.5842351 | 2.5680489 |
| ENSG00000236353 | 2.3896927 | -5.1446425 | 2.251736 | 7.393004 | 0.0073659 | 0.5666778 | ENSG00000236353 | PBX2 | PBX homeobox 2 | HSCHR6_MHC_MCF_CTG1 | 3526760 | 3532202 | protein_coding | HGNC:8633 | 1.0070239 | 1.2627735 | -13.2877124 | 1.0144196 | -13.2877124 | 2.2347941 | 2.8372417 | -13.2877124 | -13.2877124 | -13.2877124 | 1.9822883 | 0.6847101 |
| ENSG00000284626 | 5.6627008 | 7.0272404 | 1.718214 | 8.467498 | 0.0074065 | 0.5666778 | ENSG00000284626 | 15 | 90234200 | 90265462 | protein_coding | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 0.6772160 | -1.5404341 | -2.7559313 | 0.3177255 | 0.9860381 | 0.6902392 | -0.5208564 | -13.2877124 | |||
| ENSG00000168477 | 1.2421822 | 3.0253597 | 4.338109 | 7.569967 | 0.0074162 | 0.5666778 | ENSG00000168477 | TNXB | tenascin XB | 6 | 32041153 | 32115334 | protein_coding | HGNC:11976 | -0.9290969 | -13.2877124 | -2.0955120 | 1.0927757 | 1.0459454 | -0.6638309 | 1.5035167 | 2.5003771 | 1.6540725 | 2.1384118 | 0.8826430 | -0.4678766 |
| ENSG00000120885 | 1.2729240 | 2.9034457 | 8.477550 | 7.542020 | 0.0074227 | 0.5666778 | ENSG00000120885 | CLU | clusterin | 8 | 27596917 | 27614700 | protein_coding | HGNC:2095 | 5.2806434 | 7.6297861 | 7.3328299 | 6.2688756 | 9.1745225 | 7.4243549 | 6.0269502 | 10.6997899 | 8.1442305 | 9.9264196 | 8.0853710 | 6.8925598 |
| ENSG00000116132 | -0.2354759 | -1.1758957 | 6.891664 | 7.524387 | 0.0074819 | 0.5666778 | ENSG00000116132 | PRRX1 | paired related homeobox 1 | 1 | 170662728 | 170739421 | protein_coding | HGNC:9142 | 6.0077724 | 5.1924534 | 5.9695439 | 5.5491122 | 5.5268206 | 5.4325861 | 5.9436542 | 4.0842232 | 4.8706118 | 4.5303480 | 5.6519265 | 5.7169725 |
| ENSG00000099994 | -0.9475672 | 1.1018035 | 3.564876 | 7.539386 | 0.0074875 | 0.5666778 | ENSG00000099994 | SUSD2 | sushi domain containing 2 | 22 | 24181487 | 24189106 | protein_coding | HGNC:30667 | 1.8786249 | 1.7099496 | 0.1253919 | 0.7951394 | 0.3898718 | 0.5925408 | 0.5783871 | 2.6440503 | 2.3013450 | 2.4828498 | 0.5231795 | 1.2890654 |
| ENSG00000182463 | -0.0395205 | -1.7342619 | 4.053687 | 7.536275 | 0.0075180 | 0.5666778 | ENSG00000182463 | TSHZ2 | teashirt zinc finger homeobox 2 | 20 | 52972358 | 53495330 | protein_coding | HGNC:13010 | 1.9170116 | 0.1087038 | 0.3067942 | -0.3697101 | 0.6876457 | 1.6286840 | 1.8567603 | 0.4563825 | -1.5460432 | -0.2221742 | 1.4724696 | 0.7793760 |
| ENSG00000148600 | -3.4847304 | -3.7704684 | 1.893208 | 6.646002 | 0.0076842 | 0.5730870 | ENSG00000148600 | CDHR1 | cadherin related family member 1 | 10 | 84194537 | 84219621 | protein_coding | HGNC:14550 | -1.6335552 | 0.4013334 | 1.4929945 | 0.4876006 | -13.2877124 | -13.2877124 | -1.5602343 | -13.2877124 | -2.5767166 | -3.5758562 | -3.1443457 | 0.5508657 |
| ENSG00000174804 | 0.8467582 | -0.3748851 | 6.296850 | 7.449599 | 0.0077390 | 0.5730870 | ENSG00000174804 | FZD4 | frizzled class receptor 4 | 11 | 86945679 | 86955395 | protein_coding | HGNC:4042 | 3.0447957 | 1.9197188 | 3.3144048 | 2.3787707 | 3.3534083 | 3.8903389 | 3.8149436 | 2.4973186 | 2.2530498 | 2.3803479 | 3.7049948 | 2.7647236 |
| ENSG00000149600 | -0.0296234 | -1.7710309 | 3.543483 | 7.464984 | 0.0077541 | 0.5730870 | ENSG00000149600 | COMMD7 | COMM domain containing 7 | 20 | 32702699 | 32743467 | protein_coding | HGNC:16223 | 2.7834889 | 2.8468258 | 3.2423424 | 2.2077064 | 2.9828662 | 3.0428042 | 2.1968720 | 0.7511166 | 0.8372998 | 0.7948517 | 2.7887767 | 2.8156783 |
| ENSG00000241738 | 0.3466591 | 1.6514403 | 3.417989 | 7.471086 | 0.0077739 | 0.5730870 | ENSG00000241738 | ZNF90P1 | 3 | 101357292 | 101359242 | processed_pseudogene | HGNC:12888 | 0.7391966 | 0.8040056 | 1.9103013 | 2.0811115 | 2.1756661 | 1.9986050 | 1.4896257 | 3.0287161 | 3.1990210 | 3.1163801 | 1.9161246 | 1.5116446 | |
| ENSG00000176595 | 5.7089764 | 7.8073620 | 2.152631 | 8.336455 | 0.0078233 | 0.5735833 | ENSG00000176595 | KBTBD11 | kelch repeat and BTB domain containing 11 | 8 | 1973677 | 2006936 | protein_coding | HGNC:29104 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 0.0136438 | 0.2653361 | 0.5392690 | 0.4087945 | -1.5710331 | -13.2877124 |
| ENSG00000117133 | 1.2562230 | 0.5743687 | 4.212904 | 7.433114 | 0.0078807 | 0.5746490 | ENSG00000117133 | RPF1 | ribosome production factor 1 homolog | 1 | 84479259 | 84498352 | protein_coding | HGNC:30350 | 1.6677264 | 2.2760070 | 2.4433695 | 2.6966358 | 3.9390250 | 3.6099536 | 3.4921558 | 3.0878652 | 2.6831238 | 2.8996418 | 3.6930185 | 2.3177729 |
| ENSG00000233615 | 3.9108124 | 0.7378548 | 1.168468 | 6.895699 | 0.0081355 | 0.5884943 | ENSG00000233615 | HNRNPA1P42 | 1 | 240919653 | 240920609 | processed_pseudogene | HGNC:48771 | -1.2957619 | -1.6115702 | -13.2877124 | -13.2877124 | 2.4600296 | 0.5419905 | 2.7737362 | -1.3326110 | -1.2488722 | -1.2901342 | 2.2013230 | -2.4446495 | |
| ENSG00000276358 | -0.6713265 | 2.2822227 | 2.918111 | 7.079487 | 0.0081838 | 0.5884943 | ENSG00000276358 | PLEKHM1 | pleckstrin homology and RUN domain containing M1 | HSCHR17_2_CTG5 | 126405 | 180904 | protein_coding | HGNC:29017 | 3.7249306 | 2.0068456 | 1.5016694 | 0.7211705 | 3.9579764 | -13.2877124 | -1.9910886 | 3.5393239 | 0.7244075 | 2.7310259 | 2.3961883 | 2.4410728 |
| ENSG00000242110 | 0.6443532 | -2.7466661 | 2.307401 | 6.882848 | 0.0082439 | 0.5884943 | ENSG00000242110 | AMACR | alpha-methylacyl-CoA racemase | 5 | 33986165 | 34008104 | protein_coding | HGNC:451 | 0.3332806 | 1.6593739 | 1.5986834 | 1.7905010 | 2.0398799 | 2.1899118 | 0.9400547 | -1.9337937 | -1.3860422 | -1.6340768 | 1.8201435 | 1.4471410 |
| ENSG00000135473 | 0.7413400 | -0.4665344 | 4.619879 | 7.306240 | 0.0082992 | 0.5884943 | ENSG00000135473 | PAN2 | poly(A) specific ribonuclease subunit PAN2 | 12 | 56316223 | 56334053 | protein_coding | HGNC:20074 | 2.8658778 | 1.5308698 | 4.4103383 | 3.0131340 | 4.3655344 | 3.7795463 | 3.6575666 | 1.4343341 | 1.1426970 | 1.2958723 | 3.9685770 | 3.3043839 |
| ENSG00000100814 | -1.2922471 | -2.3866970 | 2.555359 | 7.070550 | 0.0083603 | 0.5884943 | ENSG00000100814 | CCNB1IP1 | cyclin B1 interacting protein 1 | 14 | 20311368 | 20333312 | protein_coding | HGNC:19437 | 2.9730855 | 2.4917433 | 2.2965059 | 1.6458746 | 1.2876720 | 1.1600502 | 1.4087863 | 0.4451164 | 1.3543173 | 0.9701851 | 1.2890725 | 2.4275222 |
| ENSG00000230341 | 0.5829501 | -8.3045222 | 4.042281 | 7.577137 | 0.0084180 | 0.5884943 | ENSG00000230341 | PPP1R18 | protein phosphatase 1 regulatory subunit 18 | HSCHR6_MHC_APD_CTG1 | 2005896 | 2017402 | protein_coding | HGNC:29413 | 1.3503434 | 2.2350058 | 1.0821371 | 1.9633513 | 2.8501209 | 2.7480073 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 2.2150153 | 1.7305543 |
| ENSG00000150991 | 0.2108766 | 1.4590739 | 12.489862 | 7.247929 | 0.0084747 | 0.5884943 | ENSG00000150991 | UBC | ubiquitin C | 12 | 124911604 | 124917368 | protein_coding | HGNC:12468 | 10.2352385 | 10.5555261 | 9.2145549 | 9.9623885 | 10.0631843 | 10.3107676 | 10.8312878 | 10.9278933 | 11.9616603 | 11.5354548 | 10.4380829 | 10.0708174 |
| ENSG00000071575 | -1.3347322 | -1.4383612 | 4.442150 | 7.246612 | 0.0085573 | 0.5884943 | ENSG00000071575 | TRIB2 | tribbles pseudokinase 2 | 2 | 12716910 | 12742734 | protein_coding | HGNC:30809 | 4.3849395 | 2.1699724 | 3.3051929 | 1.5638932 | 0.6216304 | 2.7329182 | 2.4490508 | 1.6183223 | 0.8214270 | 1.2742116 | 2.1855675 | 3.2567921 |
| ENSG00000169075 | 0.0156712 | 1.0692688 | 5.011863 | 7.225551 | 0.0085944 | 0.5884943 | ENSG00000169075 | BRD7P3 | 6 | 118501430 | 118502906 | processed_pseudogene | HGNC:24171 | 3.4175281 | 3.9547172 | 3.9436232 | 4.3004905 | 4.0668448 | 4.2601860 | 3.8725285 | 4.8376744 | 5.1843618 | 5.0214069 | 4.0751860 | 3.9374037 | |
| ENSG00000275079 | -5.4223671 | -1.1823953 | 3.663118 | 6.675194 | 0.0086267 | 0.5884943 | ENSG00000275079 | LPCAT1 | lysophosphatidylcholine acyltransferase 1 | HSCHR5_3_CTG1 | 8170 | 53293 | protein_coding | HGNC:25718 | 2.9993959 | 0.9075898 | 3.3968385 | 2.6994897 | -13.2877124 | -13.2877124 | -1.6225719 | -13.2877124 | 1.7716131 | 0.7716553 | -3.2066458 | 2.7496006 |
| ENSG00000137124 | 0.5728062 | -2.0592410 | 3.276617 | 7.145527 | 0.0086958 | 0.5884943 | ENSG00000137124 | ALDH1B1 | aldehyde dehydrogenase 1 family member B1 | 9 | 38392702 | 38398661 | protein_coding | HGNC:407 | 1.7484338 | 0.0914561 | 1.4880471 | 1.3707345 | 2.2000501 | 1.8721381 | 1.7771461 | -2.3264002 | 1.3571652 | 0.4652923 | 1.9613981 | 1.2952076 |
| ENSG00000069702 | -0.6224464 | -1.6063350 | 4.444606 | 7.197499 | 0.0087390 | 0.5884943 | ENSG00000069702 | TGFBR3 | transforming growth factor beta receptor 3 | 1 | 91680343 | 91906335 | protein_coding | HGNC:11774 | 3.3014627 | 2.3152662 | 2.0014445 | 3.4725891 | 1.6486587 | 1.6790765 | 2.0320857 | -0.0033900 | 1.8292517 | 1.1862406 | 1.7973737 | 2.9040455 |
| ENSG00000186153 | 2.9629213 | 2.2039184 | 2.982529 | 6.776429 | 0.0087950 | 0.5884943 | ENSG00000186153 | WWOX | WW domain containing oxidoreductase | 16 | 78099400 | 79212667 | protein_coding | HGNC:12799 | -1.2388339 | 1.8820964 | -13.2877124 | 1.0896358 | 4.3575246 | 4.4632187 | 2.6559114 | 1.9427202 | 2.9009054 | 2.4999413 | 4.0256159 | 0.6411113 |
| ENSG00000184640 | -0.1610854 | -0.8881888 | 7.193330 | 7.159427 | 0.0088257 | 0.5884943 | ENSG00000184640 | SEPTIN9 | septin 9 | 17 | 77280569 | 77500596 | protein_coding | HGNC:7323 | 6.0925383 | 5.9049617 | 5.6021455 | 5.6680377 | 5.8864682 | 5.8416447 | 5.8115393 | 4.6962536 | 4.5974220 | 4.6476841 | 5.8468796 | 5.8302282 |
| ENSG00000233076 | 0.6882284 | 2.9667323 | 1.496304 | 6.060016 | 0.0088316 | 0.5884943 | ENSG00000233076 | DDAH2 | DDAH family member 2, ADMA-independent | HSCHR6_MHC_MANN_CTG1 | 3032085 | 3035664 | protein_coding | HGNC:2716 | -1.3011770 | -1.5798960 | -0.3858367 | -13.2877124 | -13.2877124 | -0.2374930 | 1.3759925 | 2.2945549 | 1.6051956 | 1.9906638 | 0.1990309 | -1.4095312 |
| ENSG00000140937 | -0.2942599 | -1.5852983 | 6.566138 | 7.139637 | 0.0089084 | 0.5884943 | ENSG00000140937 | CDH11 | cadherin 11 | 16 | 64943753 | 65126112 | protein_coding | HGNC:1750 | 7.4490000 | 4.8816712 | 6.2176202 | 6.2180805 | 6.2038309 | 6.0041133 | 5.4640444 | 4.0959707 | 4.0540981 | 4.0751860 | 5.9231159 | 6.4638351 |
| ENSG00000172548 | 1.9521692 | 0.3151388 | 2.666956 | 6.979942 | 0.0089115 | 0.5884943 | ENSG00000172548 | NIPAL4 | NIPA like domain containing 4 | 5 | 157460213 | 157474722 | protein_coding | HGNC:28018 | -0.0970404 | -0.7319226 | 0.2827600 | -1.6706628 | 2.2397768 | 1.2346914 | 2.0357625 | -0.2355197 | 0.3374748 | 0.0792395 | 1.8974914 | -0.3828524 |
| ENSG00000116095 | -1.1580188 | 0.3743697 | 4.251520 | 7.155983 | 0.0089329 | 0.5884943 | ENSG00000116095 | PLEKHA3 | pleckstrin homology domain containing A3 | 2 | 178480457 | 178516463 | protein_coding | HGNC:14338 | -0.0751415 | 0.4811780 | 0.3125525 | -0.2610938 | 2.4691194 | -0.5278928 | 0.6183561 | 0.3940257 | 0.7073304 | 0.5591658 | 1.3721626 | 0.1445320 |
| ENSG00000038427 | -0.2370914 | -1.8523390 | 9.410725 | 7.126759 | 0.0089584 | 0.5884943 | ENSG00000038427 | VCAN | versican | 5 | 83471618 | 83582303 | protein_coding | HGNC:2464 | 7.1721094 | 6.1334552 | 7.1373699 | 6.0701876 | 6.6494630 | 6.3694099 | 6.7097658 | 5.3919531 | 3.9689731 | 4.8492227 | 6.5836626 | 6.7224608 |
| ENSG00000143624 | -5.4634770 | 2.9857313 | 2.646556 | 7.375555 | 0.0090489 | 0.5884943 | ENSG00000143624 | INTS3 | integrator complex subunit 3 | 1 | 153728050 | 153774808 | protein_coding | HGNC:26153 | -13.2877124 | -13.2877124 | -13.2877124 | 0.7808174 | -13.2877124 | -13.2877124 | -13.2877124 | 1.2986953 | 1.6157713 | 1.4659269 | -13.2877124 | -1.2189307 |
| ENSG00000018510 | 0.2853358 | -1.6173226 | 3.830401 | 7.112462 | 0.0091092 | 0.5884943 | ENSG00000018510 | AGPS | alkylglycerone phosphate synthase | 2 | 177392746 | 177567024 | protein_coding | HGNC:327 | 2.3371031 | 2.3585701 | 0.6529747 | 1.0982754 | 3.1736732 | 2.1516143 | 2.8896363 | 1.6676238 | 1.6832383 | 1.6754524 | 2.7989142 | 1.7964815 |
| ENSG00000203685 | 0.7817217 | -1.1749436 | 3.612009 | 7.114037 | 0.0091249 | 0.5884943 | ENSG00000203685 | STUM | stum, mechanosensory transduction mediator homolog | 1 | 226548764 | 226609230 | protein_coding | HGNC:30491 | 0.2186547 | -0.2931397 | 0.1139911 | 0.0163779 | 0.2465017 | 0.7368179 | 1.5081233 | -0.7653344 | -1.6775272 | -1.1505051 | 0.9252959 | 0.0262359 |
| ENSG00000146221 | -2.0009615 | -3.2222598 | 4.860779 | 7.080989 | 0.0092278 | 0.5884943 | ENSG00000146221 | TCTE1 | t-complex-associated-testis-expressed 1 | 6 | 44278734 | 44297698 | protein_coding | HGNC:11693 | 1.9219732 | 4.7184688 | 3.8441204 | 2.9257612 | -13.2877124 | 2.5791558 | 2.2496689 | 0.6430194 | 0.4304159 | 0.5406304 | 1.8388489 | 3.7025597 |
| ENSG00000163975 | 2.1719731 | 2.8203988 | 2.323652 | 6.402199 | 0.0093310 | 0.5884943 | ENSG00000163975 | MELTF | melanotransferrin | 3 | 196980590 | 197029835 | protein_coding | HGNC:7037 | -3.7152206 | -0.8061299 | -3.3904871 | -1.5514119 | 0.4220230 | -2.4544269 | 1.3839730 | 1.0166967 | 1.2272359 | 1.1258032 | 0.4619183 | -1.8828529 |
| ENSG00000278032 | -1.5466896 | 0.4910113 | 6.181801 | 7.036996 | 0.0093507 | 0.5884943 | ENSG00000278032 | LY6E | lymphocyte antigen 6 family member E | HSCHR8_4_CTG7 | 8270 | 14120 | protein_coding | HGNC:6727 | 6.6983016 | 5.8733357 | 5.5375429 | 5.9878701 | 2.4663666 | 5.3435701 | 4.7701582 | 6.2402354 | 6.8696453 | 6.5889960 | 4.6131067 | 6.0894700 |
| ENSG00000039560 | -0.3610194 | -2.2090734 | 4.007515 | 7.044207 | 0.0093708 | 0.5884943 | ENSG00000039560 | RAI14 | retinoic acid induced 14 | 5 | 34656328 | 34832612 | protein_coding | HGNC:14873 | 2.9466141 | 3.3937657 | 1.3121389 | 2.3410362 | 1.8786355 | 4.0377046 | 3.0563831 | 0.3040799 | -0.5525435 | -0.0615651 | 3.2438613 | 2.6876027 |
| ENSG00000139352 | -0.1694198 | 1.2864210 | 10.647784 | 7.028755 | 0.0093732 | 0.5884943 | ENSG00000139352 | ASCL1 | achaete-scute family bHLH transcription factor 1 | 12 | 102957674 | 102960513 | protein_coding | HGNC:738 | 8.3856973 | 9.3874892 | 8.6193121 | 7.9063225 | 8.3007718 | 8.9638218 | 8.6369101 | 9.4493564 | 10.3951113 | 9.9983831 | 8.6590929 | 8.6771685 |
| ENSG00000124875 | 0.1124585 | -3.7757284 | 4.013267 | 6.857677 | 0.0093809 | 0.5884943 | ENSG00000124875 | CXCL6 | C-X-C motif chemokine ligand 6 | 4 | 73836640 | 73849064 | protein_coding | HGNC:10643 | 3.3477265 | 2.4641868 | 5.1264853 | 2.3051791 | 3.8384480 | 1.2521322 | 5.1094313 | 2.2496377 | -2.1228997 | 1.3176572 | 4.0933523 | 3.7963143 |
| ENSG00000137819 | 1.1056821 | -1.0642149 | 3.995521 | 7.046593 | 0.0094079 | 0.5884943 | ENSG00000137819 | PAQR5 | progestin and adipoQ receptor family member 5 | 15 | 69298912 | 69407780 | protein_coding | HGNC:29645 | 1.4122992 | 0.0996803 | 0.0598841 | 1.2799389 | 2.7567161 | 1.9612447 | 1.0164478 | -0.2028010 | -0.1914782 | -0.1971285 | 2.0790050 | 0.8487613 |
| ENSG00000166233 | -0.6105329 | -0.9550025 | 5.037369 | 7.005639 | 0.0095005 | 0.5884943 | ENSG00000166233 | ARIH1 | ariadne RBR E3 ubiquitin protein ligase 1 | 15 | 72474330 | 72602987 | protein_coding | HGNC:689 | 5.2740137 | 2.9183103 | 4.3056341 | 1.5711054 | 3.3150561 | 3.2228344 | 3.9165395 | 2.5574915 | 3.0651845 | 2.8335562 | 3.5189266 | 4.1085174 |
| ENSG00000254827 | -0.5537890 | -2.3475117 | 3.716772 | 6.998194 | 0.0095349 | 0.5884943 | ENSG00000254827 | SLC22A18AS | SLC22A18 antisense RNA | 11 | 2887344 | 2903814 | lncRNA | HGNC:10965 | 3.0137995 | 2.7354149 | 4.0366282 | 2.6591306 | 2.6723961 | 2.9045866 | 2.7024838 | 1.6589043 | -1.2549193 | 0.8386622 | 2.7635616 | 3.2274460 |
| ENSG00000130649 | -5.3370105 | -6.0485205 | 4.979058 | 6.433218 | 0.0095581 | 0.5884943 | ENSG00000130649 | CYP2E1 | cytochrome P450 family 2 subfamily E member 1 | 10 | 133520406 | 133561220 | protein_coding | HGNC:2631 | -13.2877124 | 2.3469915 | -13.2877124 | 4.8516050 | -0.2063671 | -13.2877124 | 0.2873080 | -0.8308010 | 1.9601365 | 1.1548444 | -0.5234089 | 3.0857620 |
| ENSG00000120328 | -0.5963445 | -2.9680738 | 2.610206 | 6.709387 | 0.0096138 | 0.5884943 | ENSG00000120328 | PCDHB12 | protocadherin beta 12 | 5 | 141208697 | 141212571 | protein_coding | HGNC:8683 | 1.6580433 | 0.7689203 | 1.5095347 | -0.0927694 | -1.4984274 | 0.9107004 | 0.1373146 | -1.1464035 | -2.6157822 | -1.7015904 | 0.1521847 | 1.1118292 |
| ENSG00000165169 | -1.5310891 | -1.0589031 | 3.281950 | 6.975379 | 0.0096189 | 0.5884943 | ENSG00000165169 | DYNLT3 | dynein light chain Tctex-type 3 | X | 37836757 | 37847571 | protein_coding | HGNC:11694 | 2.2553361 | 2.5565003 | 2.7081510 | 1.8325368 | 1.0139939 | 0.5153421 | 1.3279506 | 2.1501697 | 1.0102363 | 1.6899790 | 0.9901765 | 2.3752972 |
| ENSG00000262246 | 1.5092221 | 2.9608211 | 4.186458 | 6.978850 | 0.0096524 | 0.5884943 | ENSG00000262246 | CORO7 | coronin 7 | 16 | 4354542 | 4425705 | protein_coding | HGNC:26161 | 0.3661381 | -13.2877124 | 2.0574811 | -13.2877124 | 2.4194957 | 1.8943948 | 1.5320371 | 3.4846736 | 3.1732309 | 3.3373402 | 1.9951154 | 0.4467030 |
| ENSG00000092820 | 0.8887046 | 1.6025700 | 4.623000 | 6.973511 | 0.0096921 | 0.5884943 | ENSG00000092820 | EZR | ezrin | 6 | 158765741 | 158819368 | protein_coding | HGNC:12691 | 1.7295336 | 2.5706640 | 1.2489786 | 1.8557709 | 2.4729114 | 3.0942626 | 3.0755167 | 3.0784375 | 3.8358304 | 3.5062759 | 2.9082809 | 1.9310415 |
| ENSG00000204033 | -3.7450467 | -4.0269528 | 2.061701 | 6.229095 | 0.0097542 | 0.5884943 | ENSG00000204033 | LRIT2 | leucine rich repeat, Ig-like and transmembrane domains 2 | 10 | 84220571 | 84225544 | protein_coding | HGNC:23443 | -13.2877124 | 1.0073986 | 2.0886742 | 0.2559913 | -13.2877124 | -1.4768034 | -13.2877124 | -2.3537783 | -13.2877124 | -3.3530411 | -3.0609630 | 0.8988099 |
| ENSG00000079785 | -0.8602744 | -0.9242179 | 4.538177 | 6.937061 | 0.0098418 | 0.5884943 | ENSG00000079785 | DDX1 | DEAD-box helicase 1 | 2 | 15591178 | 15634346 | protein_coding | HGNC:2734 | 3.1982323 | 3.9969556 | 4.6980634 | 4.0612157 | 2.3312592 | 3.8733252 | 2.3067572 | 2.3420153 | 2.5751470 | 2.4632850 | 3.0376858 | 4.0831140 |
| ENSG00000146242 | 0.4051478 | -1.6302624 | 3.846496 | 6.943328 | 0.0098433 | 0.5884943 | ENSG00000146242 | TPBG | trophoblast glycoprotein | 6 | 82363206 | 82367420 | protein_coding | HGNC:12004 | 2.3375358 | 0.4546265 | 2.1617029 | 2.2199045 | 1.7737521 | 2.0338268 | 2.8819312 | 0.1096080 | 0.0410705 | 0.0757462 | 2.3108906 | 1.9595725 |
| ENSG00000257150 | 2.0862882 | -2.9184351 | 2.061882 | 6.527021 | 0.0099590 | 0.5884943 | ENSG00000257150 | PGAM1P5 | 12 | 95672305 | 95673068 | transcribed_processed_pseudogene | HGNC:42452 | -13.2877124 | -1.4705768 | 1.2816383 | -2.1645674 | 1.6536948 | 1.8395021 | 1.6521629 | -2.7734224 | -13.2877124 | -3.7724363 | 1.7178382 | -0.4077769 | |
| ENSG00000102109 | -1.7204383 | -3.0597223 | 3.650040 | 6.861503 | 0.0099715 | 0.5884943 | ENSG00000102109 | PCSK1N | proprotein convertase subtilisin/kexin type 1 inhibitor | X | 48831096 | 48835610 | protein_coding | HGNC:17301 | 2.4753648 | 5.4427523 | 4.6349366 | 2.5956476 | 2.6145410 | 2.9923773 | 2.5130998 | 1.7022657 | 0.6165214 | 1.2592092 | 2.7217793 | 4.3209508 |
| ENSG00000172819 | -0.7150388 | -2.0528443 | 3.700240 | 6.913255 | 0.0099847 | 0.5884943 | ENSG00000172819 | RARG | retinoic acid receptor gamma | 12 | 53210567 | 53232980 | protein_coding | HGNC:9866 | 3.1758779 | 2.0386069 | 1.9351078 | 3.3048502 | 1.7212178 | 1.6426872 | 2.3409798 | 0.4760809 | 0.8768945 | 0.6903626 | 1.9368524 | 2.7469624 |
| ENSG00000013583 | -2.0788656 | 0.0234541 | 2.997251 | 6.710027 | 0.0099923 | 0.5884943 | ENSG00000013583 | HEBP1 | heme binding protein 1 | 12 | 12974870 | 13000265 | protein_coding | HGNC:17176 | 2.6556506 | 4.5422099 | 3.2386276 | 3.4362242 | 2.0061450 | 2.8555245 | -0.5959907 | 1.9990637 | 4.7010029 | 3.9072541 | 1.9899056 | 3.6399256 |
outPath = "output/day10/DEG"
Test = "day10.SCN2A.vs.WT"
qlf = glmQLFTest(fit, coef=2)
sig.gene.summary(qlf)
## q0.005 q0.01 q0.05 q0.2 p0.01
## Down 0 0 0 0 78
## NotSig 13417 13417 13417 13417 13273
## Up 0 0 0 0 66
deg = attach_annotations_by_p(qlf, 0.01)
maxAveTPM = data.frame(maxAveTPM = apply(deg[,c("SCN2A", "WT")], 1, max))
deg = cbind(deg, maxAveTPM)
# deg %>%
# kbl() %>%
# kable_styling(bootstrap_options = c("striped", "hover", "condensed")) %>%
# scroll_box(width = "100%", height = "300px")
write.table(deg, file=paste(outPath,ExperimentName,Test,"txt", sep="."), quote=FALSE, row.names=TRUE, col.names=TRUE, sep="\t")
#MvsA plot
ggplot(data = as.data.frame(topTags(qlf, n=NULL)) %>% arrange(desc(PValue)), aes(x=logCPM, y=logFC)) +
geom_point(aes(color=PValue<0.01)) +
scale_color_manual(values = xgfs_normal12[c(13,2)]) +
theme_minimal()
#Volcano plot
ggplot(data = as.data.frame(topTags(qlf, n=NULL)) %>% arrange(desc(PValue)), aes(x=logFC, y=-log10(PValue))) +
geom_point(aes(color=PValue<0.01)) +
scale_color_manual(values = xgfs_normal12[c(13,2)]) +
theme_minimal()
SCN2AUp = row.names(deg[deg[,"logFC"] > 0 & deg[,"maxAveTPM"] > log2(0.1),])
SCN2ADown = row.names(deg[deg[,"logFC"] < 0 & deg[,"maxAveTPM"] > log2(0.1),])
Test = "day10.CHD2.vs.WT"
qlf = glmQLFTest(fit, coef=3)
sig.gene.summary(qlf)
## q0.005 q0.01 q0.05 q0.2 p0.01
## Down 0 0 0 7 164
## NotSig 13417 13417 13417 13408 13146
## Up 0 0 0 2 107
deg = attach_annotations_by_p(qlf, 0.01)
maxAveTPM = data.frame(maxAveTPM = apply(deg[,c("CHD2", "WT")], 1, max))
deg = cbind(deg, maxAveTPM)
# deg %>%
# kbl() %>%
# kable_styling(bootstrap_options = c("striped", "hover", "condensed")) %>%
# scroll_box(width = "100%", height = "300px")
write.table(deg, file=paste(outPath,ExperimentName,Test,"txt", sep="."), quote=FALSE, row.names=TRUE, col.names=TRUE, sep="\t")
#MvsA plot
ggplot(data = as.data.frame(topTags(qlf, n=NULL)) %>% arrange(desc(PValue)), aes(x=logCPM, y=logFC)) +
geom_point(aes(color=PValue<0.01)) +
scale_color_manual(values = xgfs_normal12[c(13,2)]) +
theme_minimal()
#Volcano plot
ggplot(data = as.data.frame(topTags(qlf, n=NULL)) %>% arrange(desc(PValue)), aes(x=logFC, y=-log10(PValue))) +
geom_point(aes(color=PValue<0.01)) +
scale_color_manual(values = xgfs_normal12[c(13,2)]) +
theme_minimal()
CHD2Up = row.names(deg[deg[,"logFC"] > 0 & deg[,"maxAveTPM"] > log2(0.1),])
CHD2Down = row.names(deg[deg[,"logFC"] < 0 & deg[,"maxAveTPM"] > log2(0.1),])
Test = "day10"
venn.diagram(list(CHD2 = CHD2Up, SCN2A = SCN2AUp), filename = paste(outPath,ExperimentName,Test,"up.png", sep="."), imagetype = "png", main = paste(Test, "up regulated", sep = " "), col = xgfs_normal12[1:2])
## [1] 1
venn.diagram(list(CHD2 = CHD2Down, SCN2A = SCN2ADown), filename = paste(outPath,ExperimentName,Test,"down.png", sep="."), imagetype = "png", main = paste(Test, "down regulated", sep = " "), col = xgfs_normal12[1:2])
## [1] 1
SCN2AUp.d10 = SCN2AUp
SCN2ADown.d10 = SCN2ADown
CHD2Up.d10 = CHD2Up
CHD2Down.d10 = CHD2Down
Note:
Test the differences between WT, SCN2A and CHD2 at 22 days of transdifferentiation.
fit = test_a_diff_state(diffState = "day_22", countTable = counts.current)
qlf = glmQLFTest(fit, coef=2:3)
sig.gene.summary(qlf)
## q0.005 q0.01 q0.05 q0.2 p0.01
## NotSig 10620 10620 10619 10617 10398
## Sig 0 0 1 3 222
d22.genes.expressed = rownames(qlf$table)
attach_annotations_by_p(qlf, 0.01) %>%
kbl() %>%
kable_styling(bootstrap_options = c("striped", "hover", "condensed")) %>%
scroll_box(width = "100%", height = "300px")
| logFC.fSCN2A | logFC.fCHD2 | logCPM | F | PValue | FDR | ensembl_gene_id | hgnc_symbol | entrezgene_description | chromosome_name | start_position | end_position | gene_biotype | hgnc_id | CON_1_d22 | CON_2_d22 | CON_3_d22 | CON_4_d22 | SCN2A_1_d22 | SCN2A_2_d22 | SCN2A_3_d22 | CHD2_1_d22 | CHD2_2_d22 | CHD2 | SCN2A | WT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000115461 | 1.2154621 | -1.8009508 | 9.854720 | 46.875451 | 0.0000017 | 0.0177274 | ENSG00000115461 | IGFBP5 | insulin like growth factor binding protein 5 | 2 | 216672105 | 216695549 | protein_coding | HGNC:5474 | 6.7393814 | 6.4262847 | 6.6384098 | 6.8382508 | 7.2831498 | 8.0650522 | 8.0668223 | 4.9227770 | 4.7471416 | 4.8376305 | 7.8490410 | 6.6685106 |
| ENSG00000078018 | -1.3681381 | -2.3362726 | 5.580023 | 31.597306 | 0.0000141 | 0.0746568 | ENSG00000078018 | MAP2 | microtubule associated protein 2 | 2 | 209424047 | 209734147 | protein_coding | HGNC:6839 | 3.8906787 | 2.9556599 | 4.1916258 | 4.3579641 | 2.5426790 | 1.1316731 | 3.4181590 | 2.0545328 | 2.3787374 | 2.2257228 | 2.6405899 | 3.9394360 |
| ENSG00000159167 | -2.7883869 | -3.0433089 | 4.577133 | 26.156255 | 0.0000302 | 0.1069264 | ENSG00000159167 | STC1 | stanniocalcin 1 | 8 | 23841929 | 23854806 | protein_coding | HGNC:11373 | 3.2154733 | 2.4458946 | 2.9473699 | 4.0597613 | 0.5654675 | 0.8295021 | -0.1398079 | 0.6730000 | -0.5578792 | 0.1850318 | 0.4732082 | 3.2901081 |
| ENSG00000168280 | -1.0994778 | -2.5395448 | 6.223597 | 21.434091 | 0.0000960 | 0.2281226 | ENSG00000168280 | KIF5C | kinesin family member 5C | 2 | 148875227 | 149026759 | protein_coding | HGNC:6325 | 4.0712771 | 3.5658391 | 4.4124459 | 3.4232485 | 3.3610034 | 1.9651548 | 2.6938576 | 1.5036372 | 0.9857933 | 1.2678258 | 2.7830731 | 3.9230284 |
| ENSG00000168237 | -0.0847893 | -3.1458674 | 7.835647 | 20.671764 | 0.0001133 | 0.2281226 | ENSG00000168237 | GLYCTK | glycerate kinase | 3 | 52287089 | 52295257 | protein_coding | HGNC:24247 | 6.6620413 | 6.3007557 | 7.9045898 | 7.8440020 | 7.1450860 | 7.2659996 | 7.7817415 | 3.7054372 | 4.1278118 | 3.9320271 | 7.4249114 | 7.3431489 |
| ENSG00000228299 | 9.6140612 | 8.1125093 | 7.350232 | 19.372934 | 0.0001289 | 0.2281226 | ENSG00000228299 | HLA-C | major histocompatibility complex, class I, C | HSCHR6_MHC_DBB_CTG1 | 2526549 | 2529920 | protein_coding | HGNC:4933 | -0.1744309 | -13.2877124 | -13.2877124 | -13.2877124 | 7.2452907 | 8.0898783 | 8.9249143 | 8.4055414 | -13.2877124 | 7.4055418 | 8.2450971 | -2.1739422 |
| ENSG00000115648 | 0.9240299 | 2.5183624 | 5.132168 | 18.690796 | 0.0001890 | 0.2293797 | ENSG00000115648 | MLPH | melanophilin | 2 | 237485428 | 237555322 | protein_coding | HGNC:29643 | 4.9991954 | 3.4565139 | 2.8892152 | 2.8823265 | 5.1409111 | 3.3592836 | 5.0391195 | 5.1624346 | 5.9724117 | 5.6235353 | 4.7082816 | 3.8515492 |
| ENSG00000053918 | 3.2971008 | -1.5166940 | 3.230305 | 14.807817 | 0.0001897 | 0.2293797 | ENSG00000053918 | KCNQ1 | potassium voltage-gated channel subfamily Q member 1 | 11 | 2444654 | 2849105 | protein_coding | HGNC:6294 | -0.5545890 | -13.2877124 | 0.8324599 | 0.8526741 | 2.9156391 | 2.4274007 | 3.1530209 | -1.6352841 | -13.2877124 | -2.6348360 | 2.8626176 | 0.0933962 |
| ENSG00000157087 | -0.3644653 | -1.9549395 | 6.846559 | 18.416113 | 0.0001950 | 0.2293797 | ENSG00000157087 | ATP2B2 | ATPase plasma membrane Ca2+ transporting 2 | 3 | 10324023 | 10708007 | protein_coding | HGNC:815 | 4.3423509 | 3.8809880 | 4.8226802 | 4.6654509 | 4.9633393 | 3.8597498 | 4.4717238 | 2.6143916 | 3.0566014 | 2.8523736 | 4.5004434 | 4.4707689 |
| ENSG00000120885 | 1.0273489 | 3.5229411 | 9.022523 | 18.007641 | 0.0002160 | 0.2293797 | ENSG00000120885 | CLU | clusterin | 8 | 27596917 | 27614700 | protein_coding | HGNC:2095 | 5.0519783 | 7.8031300 | 7.7372493 | 6.6230351 | 8.2595315 | 7.3569004 | 7.4159242 | 11.5159320 | 9.5834901 | 10.8516272 | 7.7395612 | 7.1509181 |
| ENSG00000145423 | 2.5906621 | -1.4595409 | 6.595934 | 17.620824 | 0.0002417 | 0.2303368 | ENSG00000145423 | SFRP2 | secreted frizzled related protein 2 | 4 | 153780591 | 153789083 | protein_coding | HGNC:10777 | 1.5544361 | 3.2694131 | 4.3346798 | 5.4979958 | 6.6153372 | 5.8548595 | 7.4741362 | 3.3306617 | 1.7283951 | 2.7413926 | 6.7975332 | 4.2844641 |
| ENSG00000286140 | 0.4956782 | -6.5192024 | 3.907978 | 18.772994 | 0.0002603 | 0.2303368 | ENSG00000286140 | DERPC | DERPC proline and glycine rich nuclear protein | 16 | 69118010 | 69132588 | protein_coding | HGNC:54084 | 1.5096082 | 2.3181826 | 2.1629560 | 2.7893854 | 2.5885506 | 3.1048975 | 2.5143139 | -13.2877124 | -13.2877124 | -13.2877124 | 2.7606853 | 2.2649888 |
| ENSG00000254245 | -1.1678632 | 1.6349004 | 5.278198 | 16.646629 | 0.0003153 | 0.2443655 | ENSG00000254245 | PCDHGA3 | protocadherin gamma subfamily A, 3 | 5 | 141343829 | 141512975 | protein_coding | HGNC:8701 | 1.2392104 | 2.7642920 | 2.8836513 | 2.7971037 | 1.0871756 | 0.7963976 | 1.5495933 | 4.6210747 | 3.0932779 | 4.0506174 | 1.1781690 | 2.5536942 |
| ENSG00000080573 | 1.1414736 | -0.1581598 | 7.140399 | 16.496666 | 0.0003221 | 0.2443655 | ENSG00000080573 | COL5A3 | collagen type V alpha 3 chain | 19 | 9959561 | 10010504 | protein_coding | HGNC:14864 | 3.7698707 | 4.0858953 | 3.7245103 | 3.6761382 | 5.1070779 | 4.6573297 | 5.0921053 | 3.8839023 | 3.3807937 | 3.6541686 | 4.9667009 | 3.8233428 |
| ENSG00000204469 | -6.6745690 | -8.9709163 | 5.221519 | 15.225860 | 0.0003884 | 0.2750102 | ENSG00000204469 | PRRC2A | proline rich coiled-coil 2A | 6 | 31620715 | 31637771 | protein_coding | HGNC:13918 | 4.5172418 | 1.8884183 | -13.2877124 | 3.5887977 | -1.5316690 | 2.4126260 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 0.9184885 | 3.2717915 |
| ENSG00000197467 | -2.6202177 | 1.5028971 | 3.361000 | 13.250424 | 0.0004394 | 0.2851028 | ENSG00000197467 | COL13A1 | collagen type XIII alpha 1 chain | 10 | 69801880 | 69964275 | protein_coding | HGNC:2190 | 1.3820170 | 2.0137499 | 1.1656277 | 2.1118553 | -0.9006240 | -13.2877124 | -0.4973720 | 2.6554086 | 3.7415324 | 3.2983543 | -1.2698009 | 1.7236027 |
| ENSG00000205238 | -0.6588671 | 0.8706292 | 7.649536 | 15.254509 | 0.0004564 | 0.2851028 | ENSG00000205238 | SPDYE2 | speedy/RINGO cell cycle regulator family member E2 | 7 | 102551226 | 102563538 | protein_coding | HGNC:33841 | 6.9073837 | 7.3250263 | 7.2613138 | 6.9818674 | 6.7947191 | 6.1093909 | 6.2217217 | 8.0214949 | 7.7638554 | 7.8984187 | 6.4076743 | 7.1298064 |
| ENSG00000110076 | -0.6362181 | -4.0853868 | 4.475812 | 14.120380 | 0.0004985 | 0.2940902 | ENSG00000110076 | NRXN2 | neurexin 2 | 11 | 64606174 | 64723197 | protein_coding | HGNC:8009 | 4.8897311 | 1.5277029 | 2.1843777 | 2.9116599 | 0.4651648 | 2.4794468 | 1.2285041 | -2.6802434 | 2.6624102 | 1.6975319 | 1.6323534 | 3.4789296 |
| ENSG00000005020 | -2.7332569 | -0.6569980 | 3.945762 | 13.317089 | 0.0005909 | 0.3187422 | ENSG00000005020 | SKAP2 | src kinase associated phosphoprotein 2 | 7 | 26667068 | 26995239 | protein_coding | HGNC:15687 | 4.0150812 | 2.3796559 | 4.5114092 | 3.1291843 | 2.4240051 | -0.1586580 | 3.4127226 | 2.7428362 | 4.0446672 | 3.5358647 | 2.4950138 | 3.7259792 |
| ENSG00000183688 | 0.7962448 | 1.7178956 | 5.317373 | 14.383100 | 0.0006003 | 0.3187422 | ENSG00000183688 | RFLNB | refilin B | 17 | 439978 | 445939 | protein_coding | HGNC:28705 | 2.7973606 | 1.8863375 | 2.3141820 | 2.5081053 | 3.4765245 | 2.7401776 | 3.2859545 | 4.2358330 | 3.9822173 | 4.1145910 | 3.1998744 | 2.4134980 |
| ENSG00000122783 | 0.3252861 | 2.1095878 | 6.629929 | 13.726128 | 0.0007233 | 0.3333062 | ENSG00000122783 | CYREN | cell cycle regulator of NHEJ | 7 | 135092363 | 135170795 | protein_coding | HGNC:22432 | 6.0384450 | 4.4427601 | 4.9441931 | 6.3857980 | 6.3147225 | 5.0817779 | 6.5776380 | 8.1519752 | 7.5734805 | 7.8915314 | 6.1222693 | 5.6573733 |
| ENSG00000233151 | 4.0196391 | 6.5852888 | 4.532378 | 11.676727 | 0.0007500 | 0.3333062 | ENSG00000233151 | CYP21A2 | cytochrome P450 family 21 subfamily A member 2 | HSCHR6_MHC_COX_CTG1 | 3476620 | 3479992 | protein_coding | HGNC:2600 | -13.2877124 | -13.2877124 | -13.2877124 | 0.2051185 | 2.6383635 | -13.2877124 | 3.4533437 | -13.2877124 | 6.1168701 | 5.1168722 | 2.5176982 | -1.7945059 |
| ENSG00000166106 | 1.2195178 | -0.9392369 | 5.016466 | 13.459585 | 0.0007994 | 0.3333062 | ENSG00000166106 | ADAMTS15 | ADAM metallopeptidase with thrombospondin type 1 motif 15 | 11 | 130448645 | 130476645 | protein_coding | HGNC:16305 | 2.1075911 | 0.7778014 | 1.7117112 | 2.2984269 | 3.4064263 | 2.5612907 | 3.0042375 | 0.9569034 | 0.7285806 | 0.8472545 | 3.0314585 | 1.8297408 |
| ENSG00000170577 | 5.0094360 | 0.5934652 | 2.851396 | 12.401449 | 0.0008659 | 0.3333062 | ENSG00000170577 | SIX2 | SIX homeobox 2 | 2 | 45005182 | 45009452 | protein_coding | HGNC:10888 | -13.2877124 | -0.8984252 | -13.2877124 | -13.2877124 | 2.8518600 | 2.0545766 | 2.8857385 | -1.0073563 | -13.2877124 | -2.0070663 | 2.6449609 | -2.8976187 |
| ENSG00000107551 | 0.5758707 | 2.2845082 | 4.199452 | 13.140351 | 0.0008741 | 0.3333062 | ENSG00000107551 | RASSF4 | Ras association domain family member 4 | 10 | 44959407 | 44995891 | protein_coding | HGNC:20793 | 1.4489966 | 0.0154419 | 0.4422928 | 0.5038362 | 2.3554372 | 1.2318256 | 1.1630124 | 3.0316713 | 3.2699446 | 3.1557214 | 1.6938219 | 0.7043594 |
| ENSG00000104435 | -0.7578305 | -2.0730237 | 5.936616 | 13.084474 | 0.0008886 | 0.3333062 | ENSG00000104435 | STMN2 | stathmin 2 | 8 | 79611117 | 79666158 | protein_coding | HGNC:10577 | 4.9364823 | 5.1329160 | 4.9262776 | 5.7312044 | 4.0454245 | 4.1792688 | 4.9002866 | 3.6234135 | 2.3267694 | 3.1161097 | 4.4260799 | 5.2214575 |
| ENSG00000127241 | 0.9020888 | -1.3699098 | 8.236080 | 13.060429 | 0.0008901 | 0.3333062 | ENSG00000127241 | MASP1 | MBL associated serine protease 1 | 3 | 187217282 | 187291980 | protein_coding | HGNC:6901 | 6.6556987 | 6.4278299 | 6.2170083 | 7.6425060 | 7.3854554 | 7.2336384 | 7.3710187 | 6.4209114 | 5.4290593 | 6.0085949 | 7.3316419 | 6.8489954 |
| ENSG00000147488 | -0.5716525 | -2.4595768 | 5.647996 | 12.969826 | 0.0009259 | 0.3333062 | ENSG00000147488 | ST18 | ST18 C2H2C-type zinc finger transcription factor | 8 | 52110838 | 52460959 | protein_coding | HGNC:18695 | 4.1267364 | 3.7506849 | 5.1966399 | 4.2959017 | 4.5708094 | 3.6927304 | 5.1337380 | 1.3362857 | 1.3748603 | 1.3557019 | 4.5810432 | 4.4470027 |
| ENSG00000165973 | 1.6861953 | 3.6981998 | 3.640160 | 11.322697 | 0.0009605 | 0.3333062 | ENSG00000165973 | NELL1 | neural EGFL like 1 | 11 | 20669551 | 21575686 | protein_coding | HGNC:7750 | -1.4413679 | -1.0380004 | 0.0708921 | 0.4339721 | -13.2877124 | -0.0216096 | 3.5648224 | 2.8706754 | 3.5128021 | 3.2271731 | 2.0952354 | -0.2966627 |
| ENSG00000167614 | 1.0607496 | -4.1068808 | 3.951697 | 12.037345 | 0.0009972 | 0.3333062 | ENSG00000167614 | TTYH1 | tweety family member 1 | 19 | 54415219 | 54436904 | protein_coding | HGNC:13476 | 0.6688589 | 1.1415348 | 0.4347323 | 2.7093762 | 2.4925572 | 2.0782375 | 3.3369266 | -13.2877124 | 0.7668436 | -0.2330716 | 2.7337274 | 1.5469585 |
| ENSG00000174804 | 1.4158827 | 0.4083915 | 6.077212 | 12.629228 | 0.0010279 | 0.3333062 | ENSG00000174804 | FZD4 | frizzled class receptor 4 | 11 | 86945679 | 86955395 | protein_coding | HGNC:4042 | 2.5438225 | 1.6009315 | 2.0121145 | 2.6147902 | 3.2958636 | 3.5405964 | 3.9960637 | 2.6525914 | 2.5988654 | 2.6259783 | 3.6405419 | 2.2497320 |
| ENSG00000204033 | -2.5751957 | -6.8568055 | 3.502770 | 12.186484 | 0.0010600 | 0.3333062 | ENSG00000204033 | LRIT2 | leucine rich repeat, Ig-like and transmembrane domains 2 | 10 | 84220571 | 84225544 | protein_coding | HGNC:23443 | -1.4720049 | 2.7270088 | 2.6640547 | 3.0865470 | 0.1891427 | -0.8112598 | -0.3634028 | -13.2877124 | -13.2877124 | -13.2877124 | -0.2703825 | 2.4471838 |
| ENSG00000157005 | 0.9725873 | -1.4842086 | 8.848434 | 12.492251 | 0.0010714 | 0.3333062 | ENSG00000157005 | SST | somatostatin | 3 | 187668912 | 187670394 | protein_coding | HGNC:11329 | 9.1151141 | 9.5829116 | 9.6651642 | 11.1733260 | 10.8000239 | 11.4581409 | 10.6472385 | 8.8498269 | 8.0641648 | 8.5098296 | 11.0131259 | 10.1172461 |
| ENSG00000168802 | 1.0902952 | 4.2974119 | 3.369461 | 9.991134 | 0.0010770 | 0.3333062 | ENSG00000168802 | CHTF8 | chromosome transmission fidelity factor 8 | 16 | 69118010 | 69132588 | protein_coding | HGNC:24353 | -13.2877124 | 2.8537077 | -13.2877124 | -13.2877124 | 1.9266242 | 1.1461267 | -13.2877124 | 3.2977210 | 3.2086593 | 3.2538774 | 1.0035864 | 0.8537674 |
| ENSG00000149212 | 1.0188947 | -0.3744701 | 6.349448 | 12.345297 | 0.0011272 | 0.3333062 | ENSG00000149212 | SESN3 | sestrin 3 | 11 | 95165513 | 95232541 | protein_coding | HGNC:23060 | 2.4744207 | 2.4956547 | 1.8799222 | 2.8952359 | 3.5797290 | 5.1677911 | 3.4033315 | 2.6017227 | 1.6958544 | 2.2187499 | 4.2850029 | 2.4801030 |
| ENSG00000112365 | 1.9168884 | 2.8529782 | 3.448981 | 11.206075 | 0.0011299 | 0.3333062 | ENSG00000112365 | ZBTB24 | zinc finger and BTB domain containing 24 | 6 | 109460632 | 109483239 | protein_coding | HGNC:21143 | -2.3735067 | -0.7650720 | -1.2459643 | -1.4665563 | 0.8635603 | 0.6032852 | 0.3094510 | 0.9988519 | 1.8958583 | 1.5159753 | 0.6097332 | -1.3539565 |
| ENSG00000176788 | -0.2016400 | -1.5218051 | 6.759060 | 11.972125 | 0.0012773 | 0.3520452 | ENSG00000176788 | BASP1 | brain abundant membrane attached signal protein 1 | 5 | 17065598 | 17276843 | protein_coding | HGNC:957 | 5.7277589 | 6.1997812 | 6.3846615 | 6.4812136 | 5.5910908 | 6.0635494 | 6.2520743 | 4.3311374 | 4.8690820 | 4.6250390 | 5.9947702 | 6.2259003 |
| ENSG00000086570 | -0.7487769 | 0.4181345 | 7.231664 | 11.957446 | 0.0012833 | 0.3520452 | ENSG00000086570 | FAT2 | FAT atypical cadherin 2 | 5 | 151504092 | 151591331 | protein_coding | HGNC:3596 | 3.2703054 | 3.0854811 | 3.0188944 | 3.4243590 | 2.2667781 | 2.4491852 | 2.5778923 | 3.6076440 | 3.5879964 | 3.5978536 | 2.4368918 | 3.2085995 |
| ENSG00000018189 | -0.0985046 | -1.7409245 | 5.658187 | 11.953743 | 0.0012928 | 0.3520452 | ENSG00000018189 | RUFY3 | RUN and FYVE domain containing 3 | 4 | 70704204 | 70808619 | protein_coding | HGNC:30285 | 3.9388501 | 3.3857636 | 3.7553100 | 5.4862944 | 4.6295425 | 5.9232733 | 3.4767297 | 1.7915465 | 3.2493341 | 2.6972316 | 5.0085570 | 4.3943651 |
| ENSG00000258388 | -9.6601098 | -9.6601098 | 5.861661 | 14.340726 | 0.0014022 | 0.3722803 | ENSG00000258388 | PPT2-EGFL8 | 6 | 32153845 | 32171978 | protein_coding | HGNC:48343 | 5.9722763 | 4.4317228 | -13.2877124 | 4.1945557 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 4.6819187 | |
| ENSG00000178814 | 2.8424301 | 1.4495904 | 3.787627 | 11.011780 | 0.0014546 | 0.3767717 | ENSG00000178814 | OPLAH | 5-oxoprolinase, ATP-hydrolysing | 8 | 144051266 | 144063965 | protein_coding | HGNC:8149 | 1.9644851 | -1.8616678 | -0.1717145 | 0.3442274 | 3.8685074 | 3.9547719 | 1.7996241 | 1.8351629 | -0.6177267 | 1.0771794 | 3.4851548 | 0.6633783 |
| ENSG00000144893 | 2.9119905 | -0.3538035 | 6.189553 | 11.511148 | 0.0015155 | 0.3771598 | ENSG00000144893 | MED12L | mediator complex subunit 12L | 3 | 151085286 | 151437072 | protein_coding | HGNC:16050 | 2.6738045 | 0.1089272 | 1.5590307 | -0.1465280 | 2.4265004 | 3.1389696 | 4.7213450 | 1.7539895 | -3.6853290 | 0.7868615 | 3.7571769 | 1.4994638 |
| ENSG00000138792 | 4.4486123 | 3.4354732 | 3.291573 | 9.990191 | 0.0015271 | 0.3771598 | ENSG00000138792 | ENPEP | glutamyl aminopeptidase | 4 | 110365733 | 110565285 | protein_coding | HGNC:3355 | -1.7024540 | -13.2877124 | -13.2877124 | -13.2877124 | 1.1702898 | 1.2733279 | 0.7153443 | 0.5312592 | -0.6959867 | 0.0443780 | 1.0725927 | -3.7010461 |
| ENSG00000180611 | 2.2076921 | 0.1880024 | 3.552860 | 10.854820 | 0.0016713 | 0.3950894 | ENSG00000180611 | MB21D2 | Mab-21 domain containing 2 | 3 | 192796815 | 192917856 | protein_coding | HGNC:30438 | 0.5369759 | -0.4333855 | 0.2585141 | 0.7740748 | 2.7009390 | 2.8983005 | 2.1052982 | 0.7787855 | 0.2235869 | 0.5277300 | 2.6056991 | 0.3498714 |
| ENSG00000102109 | -0.5194391 | -1.9857637 | 5.493957 | 11.217829 | 0.0016741 | 0.3950894 | ENSG00000102109 | PCSK1N | proprotein convertase subtilisin/kexin type 1 inhibitor | X | 48831096 | 48835610 | protein_coding | HGNC:17301 | 5.9212418 | 5.6615316 | 6.5710235 | 5.9760811 | 5.5273355 | 5.5146339 | 5.8091323 | 4.5562152 | 3.2944753 | 4.0590965 | 5.6235716 | 6.0727532 |
| ENSG00000152932 | -1.3204969 | -2.2028048 | 4.690510 | 10.927621 | 0.0018733 | 0.4287718 | ENSG00000152932 | RAB3C | RAB3C, member RAS oncogene family | 5 | 58582221 | 58859394 | protein_coding | HGNC:30269 | 1.3740457 | 4.0116798 | 4.7933908 | 5.3490858 | 0.6790445 | -0.4321294 | 2.8636374 | -0.1744455 | -0.5934046 | -0.3687700 | 1.6811834 | 4.4464616 |
| ENSG00000239264 | 0.9432881 | 1.1014428 | 7.589479 | 10.725931 | 0.0019821 | 0.4287718 | ENSG00000239264 | TXNDC5 | thioredoxin domain containing 5 | 6 | 7881517 | 7910788 | protein_coding | HGNC:21073 | 5.2103216 | 5.2582689 | 5.3872643 | 5.4473387 | 6.7062434 | 5.7085592 | 6.1815991 | 6.8040277 | 6.1744205 | 6.5233008 | 6.2561154 | 5.3289578 |
| ENSG00000248329 | 3.8146640 | 2.3359904 | 3.626628 | 9.242559 | 0.0020186 | 0.4287718 | ENSG00000248329 | APELA | apelin receptor early endogenous ligand | 4 | 164877178 | 164898965 | protein_coding | HGNC:48925 | -0.0929540 | -1.0597806 | -13.2877124 | -0.1728151 | 3.6165221 | 3.0307164 | 3.8296993 | 4.6963858 | -13.2877124 | 3.6963913 | 3.5300737 | -0.7955362 |
| ENSG00000087074 | 0.1502397 | -1.4313951 | 5.407235 | 10.687758 | 0.0020248 | 0.4287718 | ENSG00000087074 | PPP1R15A | protein phosphatase 1 regulatory subunit 15A | 19 | 48872212 | 48876059 | protein_coding | HGNC:14375 | 4.0502677 | 4.0572694 | 4.6062940 | 4.3191646 | 4.5376719 | 3.7976805 | 4.5541640 | 2.9525045 | 2.8474059 | 2.9009120 | 4.3368918 | 4.2767656 |
| ENSG00000126603 | 2.8002668 | 4.8903187 | 3.499261 | 8.986899 | 0.0020566 | 0.4287718 | ENSG00000126603 | GLIS2 | GLIS family zinc finger 2 | 16 | 4314761 | 4339597 | protein_coding | HGNC:29450 | -0.3908824 | -13.2877124 | -13.2877124 | -13.2877124 | 1.8302574 | -13.2877124 | -13.2877124 | 2.8440457 | 2.5136471 | 2.6882841 | 0.2453760 | -2.3903154 |
| ENSG00000127995 | 1.6873341 | -1.9207012 | 3.213817 | 9.669144 | 0.0021320 | 0.4287718 | ENSG00000127995 | CASD1 | CAS1 domain containing 1 | 7 | 94509219 | 94557019 | protein_coding | HGNC:16014 | 0.6095857 | -0.2421541 | 0.2166808 | 0.8646137 | 1.2181848 | 2.1261578 | 1.8347104 | -1.9367511 | -2.1675134 | -2.0475233 | 1.7738655 | 0.4206743 |
| ENSG00000253953 | 2.2163484 | 0.7611827 | 3.921109 | 10.417983 | 0.0021391 | 0.4287718 | ENSG00000253953 | PCDHGB4 | protocadherin gamma subfamily B, 4 | 5 | 141387698 | 141512975 | protein_coding | HGNC:8711 | 0.0717489 | -0.4335803 | 0.8614052 | -0.6215971 | 2.6116766 | 1.3472206 | 2.5730822 | 0.6083305 | 0.9862507 | 0.8096301 | 2.2836397 | 0.0902329 |
| ENSG00000148082 | 1.3926045 | -0.7621476 | 5.025644 | 10.486639 | 0.0021991 | 0.4287718 | ENSG00000148082 | SHC3 | SHC adaptor protein 3 | 9 | 89005771 | 89178818 | protein_coding | HGNC:18181 | -0.0679524 | 0.5905599 | 0.2075918 | 1.9872212 | 2.3172030 | 1.9383118 | 2.4992275 | 2.4221843 | -0.3835538 | 1.6150316 | 2.2700352 | 0.9220661 |
| ENSG00000204520 | -7.5707900 | -7.5707900 | 3.964003 | 12.576477 | 0.0022303 | 0.4287718 | ENSG00000204520 | MICA | MHC class I polypeptide-related sequence A | 6 | 31399784 | 31415315 | protein_coding | HGNC:7090 | 4.0112845 | 4.1973296 | -13.2877124 | 4.1000571 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 3.6898571 |
| ENSG00000106070 | 1.4434900 | -0.1033140 | 4.396150 | 10.439823 | 0.0022605 | 0.4287718 | ENSG00000106070 | GRB10 | growth factor receptor bound protein 10 | 7 | 50590063 | 50793462 | protein_coding | HGNC:4564 | 3.0895668 | 1.9730466 | 1.2294218 | 1.9288312 | 2.7610176 | 3.8764508 | 2.4673470 | 1.7505379 | 0.8764686 | 1.3787103 | 3.1697020 | 2.2164986 |
| ENSG00000274944 | -1.1317878 | -0.0753593 | 5.742414 | 10.377368 | 0.0022687 | 0.4287718 | ENSG00000274944 | 1 | 38864501 | 38881617 | protein_coding | 4.2160504 | 3.8685449 | 4.3290617 | 4.9233905 | 2.9830323 | 3.1140665 | 2.9704863 | 4.0487147 | 4.0713635 | 4.0600835 | 3.0240042 | 4.3860446 | |||
| ENSG00000242265 | 0.9107498 | -2.7437944 | 6.452623 | 10.245421 | 0.0023830 | 0.4287718 | ENSG00000242265 | PEG10 | paternally expressed 10 | 7 | 94656325 | 94669695 | protein_coding | HGNC:14005 | 3.6743091 | 4.0973941 | 3.7151969 | 5.9802768 | 5.0884646 | 4.6587239 | 6.2638236 | -0.3406216 | 2.5728618 | 1.7526600 | 5.5038216 | 4.7299436 |
| ENSG00000077942 | 1.1745016 | -0.7214730 | 8.986809 | 10.213985 | 0.0023968 | 0.4287718 | ENSG00000077942 | FBLN1 | fibulin 1 | 22 | 45502238 | 45601135 | protein_coding | HGNC:3600 | 6.8146830 | 7.2713206 | 7.3152248 | 7.4175935 | 8.2491994 | 8.0676406 | 8.6975668 | 7.2025119 | 5.1578459 | 6.5156167 | 8.3630088 | 7.2222701 |
| ENSG00000110092 | -0.9467891 | -1.5242152 | 6.829618 | 10.138180 | 0.0024689 | 0.4287718 | ENSG00000110092 | CCND1 | cyclin D1 | 11 | 69641156 | 69654474 | protein_coding | HGNC:1582 | 4.1133444 | 6.1373005 | 7.0058541 | 6.7629950 | 5.2924917 | 4.6671134 | 4.5346707 | 3.0080413 | 4.2873939 | 3.7851142 | 4.8707952 | 6.3435274 |
| ENSG00000148600 | -3.8589711 | -3.3488040 | 3.787410 | 8.828474 | 0.0025336 | 0.4287718 | ENSG00000148600 | CDHR1 | cadherin related family member 1 | 10 | 84194537 | 84219621 | protein_coding | HGNC:14550 | -13.2877124 | 1.7456336 | 2.6290024 | 2.1532739 | -13.2877124 | -1.1247201 | -0.1459070 | -1.8659368 | -0.3150000 | -0.8913805 | -1.1387043 | 1.8061036 |
| ENSG00000229698 | -4.9637719 | -7.6966188 | 4.092576 | 9.320796 | 0.0025816 | 0.4287718 | ENSG00000229698 | HLA-F | major histocompatibility complex, class I, F | HSCHR6_MHC_SSTO_CTG1 | 1029074 | 1044770 | protein_coding | HGNC:4963 | 6.0894158 | -13.2877124 | 5.8315335 | 3.6022307 | -13.2877124 | 0.8091625 | 3.1156735 | -13.2877124 | -13.2877124 | -13.2877124 | 1.7963403 | 5.0999592 |
| ENSG00000124225 | 1.9116165 | 0.1199893 | 4.646295 | 10.048367 | 0.0026110 | 0.4287718 | ENSG00000124225 | PMEPA1 | prostate transmembrane protein, androgen induced 1 | 20 | 57648392 | 57711536 | protein_coding | HGNC:14107 | 4.2629126 | 0.7638076 | -0.9385722 | 3.6421898 | 4.4066973 | 4.9657224 | 5.0539404 | 3.7297281 | 5.0093581 | 4.5069972 | 4.8358921 | 3.0833693 |
| ENSG00000184347 | 1.5369432 | -0.1537926 | 7.116849 | 9.925170 | 0.0026772 | 0.4287718 | ENSG00000184347 | SLIT3 | slit guidance ligand 3 | 5 | 168661740 | 169301139 | protein_coding | HGNC:11087 | 3.8305179 | 4.0075769 | 1.9137741 | 3.9831096 | 4.8285083 | 5.6115702 | 5.6075453 | 3.9726308 | 2.9554119 | 3.5518765 | 5.3930537 | 3.6407528 |
| ENSG00000179051 | -0.2659859 | -2.3153316 | 4.386277 | 9.908050 | 0.0026944 | 0.4287718 | ENSG00000179051 | RCC2 | regulator of chromosome condensation 2 | 1 | 17406760 | 17439677 | protein_coding | HGNC:30297 | 2.5630817 | 2.6854632 | 1.8204094 | 3.0144560 | 2.8298045 | 2.4663309 | 2.5720519 | 0.7171445 | 0.3744697 | 0.5559575 | 2.6309250 | 2.5822511 |
| ENSG00000225859 | 2.1751185 | 0.6686480 | 5.453506 | 9.905518 | 0.0027305 | 0.4287718 | ENSG00000225859 | DDX39B | DExD-box helicase 39B | HSCHR6_MHC_MANN_CTG1 | 2835292 | 2851631 | protein_coding | HGNC:13917 | 2.7015832 | 2.7320028 | 5.0183083 | 2.6303915 | 5.7460551 | 4.4403019 | 5.3688545 | 3.5509483 | 4.9153308 | 4.3887551 | 5.2817364 | 3.6934747 |
| ENSG00000121898 | -1.1962186 | 3.0942561 | 3.605255 | 8.559309 | 0.0028106 | 0.4287718 | ENSG00000121898 | CPXM2 | carboxypeptidase X, M14 family member 2 | 10 | 123706207 | 123940267 | protein_coding | HGNC:26977 | -13.2877124 | 1.5012939 | -13.2877124 | 0.5420847 | -13.2877124 | 1.1032479 | -13.2877124 | 2.4913485 | 3.7864174 | 3.2795694 | -0.4815803 | 0.1000492 |
| ENSG00000182108 | -1.2319528 | -0.1356314 | 6.563218 | 9.745620 | 0.0028733 | 0.4287718 | ENSG00000182108 | DEXI | Dexi homolog | 16 | 10928891 | 10942468 | protein_coding | HGNC:13267 | 3.9600051 | 4.9673928 | 5.1199148 | 5.2017904 | 3.4832360 | 3.9204332 | 4.1104058 | 4.7352293 | 5.2750828 | 5.0302615 | 3.8611941 | 4.8878279 |
| ENSG00000164692 | 1.5532203 | 0.0013873 | 12.456120 | 9.709311 | 0.0029083 | 0.4287718 | ENSG00000164692 | COL1A2 | collagen type I alpha 2 chain | 7 | 94394895 | 94431227 | protein_coding | HGNC:2198 | 10.1259203 | 9.2642410 | 8.3903293 | 9.8505353 | 10.4972851 | 10.4693268 | 11.4974508 | 9.9110441 | 8.7649111 | 9.4489214 | 10.9054669 | 9.5464444 |
| ENSG00000139289 | -0.9508426 | -1.0289026 | 8.059266 | 9.684013 | 0.0029376 | 0.4287718 | ENSG00000139289 | PHLDA1 | pleckstrin homology like domain family A member 1 | 12 | 76025447 | 76031776 | protein_coding | HGNC:8933 | 5.6614926 | 4.6981308 | 5.1789294 | 5.4583924 | 4.5110533 | 3.9930714 | 4.4375943 | 4.5200291 | 3.8986078 | 4.2425217 | 4.3313778 | 5.2924792 |
| ENSG00000134207 | -1.3740526 | -6.7330023 | 3.549973 | 10.046641 | 0.0029461 | 0.4287718 | ENSG00000134207 | SYT6 | synaptotagmin 6 | 1 | 114089291 | 114153880 | protein_coding | HGNC:18638 | 0.6237049 | 3.1698330 | 1.9942825 | 3.5890113 | 2.0581138 | 0.2426025 | -0.3301387 | -13.2877124 | -13.2877124 | -13.2877124 | 1.0339811 | 2.7310831 |
| ENSG00000136997 | 0.9547388 | -2.1263818 | 4.739893 | 9.583090 | 0.0030477 | 0.4287718 | ENSG00000136997 | MYC | MYC proto-oncogene, bHLH transcription factor | 8 | 127735434 | 127742951 | protein_coding | HGNC:7553 | 5.4268589 | 0.9957812 | 2.9123377 | 5.5504534 | 4.6007509 | 3.8367477 | 5.3676615 | 2.4208316 | 1.1712831 | 1.9273113 | 4.7340874 | 4.6352568 |
| ENSG00000077279 | -1.0816719 | -3.8822139 | 5.019413 | 9.405814 | 0.0031414 | 0.4287718 | ENSG00000077279 | DCX | doublecortin | X | 111293779 | 111412429 | protein_coding | HGNC:2714 | 2.7783198 | 2.8259677 | 1.8965776 | 3.2427665 | 1.7313219 | 1.4074838 | 1.9974864 | -13.2877124 | -0.8656529 | -1.8653900 | 1.7320660 | 2.7623907 |
| ENSG00000185624 | 1.1165770 | 0.6098968 | 9.261682 | 9.501514 | 0.0031552 | 0.4287718 | ENSG00000185624 | P4HB | prolyl 4-hydroxylase subunit beta | 17 | 81843159 | 81860856 | protein_coding | HGNC:8548 | 7.6393985 | 7.6547997 | 7.4526223 | 8.4525255 | 8.4241572 | 8.5848563 | 8.5923619 | 8.5277992 | 7.7152658 | 8.1779950 | 8.5358508 | 7.8554852 |
| ENSG00000233935 | 0.5466009 | 2.9004409 | 6.096533 | 9.390896 | 0.0033263 | 0.4287718 | ENSG00000233935 | HSCHR6_MHC_COX_CTG1 | 1206841 | 1207831 | unprocessed_pseudogene | -13.2877124 | 5.3575830 | 6.0996609 | 3.8688770 | 6.0667744 | 5.3582563 | 4.7148631 | 7.3742830 | 8.0888554 | 7.7753655 | 5.4844936 | 4.9563852 | |||
| ENSG00000165609 | -1.0789321 | 0.5131832 | 5.288029 | 9.394920 | 0.0033263 | 0.4287718 | ENSG00000165609 | NUDT5 | nudix hydrolase 5 | 10 | 12165330 | 12195891 | protein_coding | HGNC:8052 | 4.2921533 | 4.2719533 | 5.7312933 | 3.9830484 | 3.0693084 | 3.8097975 | 3.1277057 | 4.6978888 | 4.7742901 | 4.7365951 | 3.3765627 | 4.7528513 |
| ENSG00000187244 | -1.1331906 | 1.0136080 | 5.447649 | 9.358999 | 0.0033748 | 0.4287718 | ENSG00000187244 | BCAM | basal cell adhesion molecule (Lutheran blood group) | 19 | 44809071 | 44821421 | protein_coding | HGNC:6722 | 3.2852544 | 4.2477372 | 5.4384757 | 3.0943866 | 3.9449615 | 3.4640556 | 1.7943289 | 5.1186728 | 5.0066593 | 5.0637529 | 3.3173501 | 4.3336541 |
| ENSG00000138756 | -1.0983250 | -0.7037116 | 5.353587 | 9.328570 | 0.0034071 | 0.4287718 | ENSG00000138756 | BMP2K | BMP2 inducible kinase | 4 | 78776342 | 78916365 | protein_coding | HGNC:18041 | 2.9762696 | 2.7785255 | 3.7415815 | 3.5349537 | 1.9410740 | 2.0436087 | 4.9993843 | 2.4191079 | 2.0173219 | 2.2321570 | 3.7351256 | 3.3110024 |
| ENSG00000284753 | -0.7183719 | -1.1263574 | 7.522214 | 9.304538 | 0.0034127 | 0.4287718 | ENSG00000284753 | EEF1AKMT4 | EEF1A lysine methyltransferase 4 | 3 | 184249672 | 184258759 | protein_coding | HGNC:53611 | 6.8690003 | 6.6337439 | 7.4434559 | 7.1904638 | 6.1633691 | 6.0327867 | 6.6918765 | 5.6734531 | 6.0742933 | 5.8877499 | 6.3251057 | 7.0669434 |
| ENSG00000225073 | -2.9756550 | 2.0275098 | 3.120446 | 8.968612 | 0.0034374 | 0.4287718 | ENSG00000225073 | DDX39B | DExD-box helicase 39B | HSCHR6_MHC_COX_CTG1 | 3007552 | 3023908 | protein_coding | HGNC:13917 | 2.7015832 | 1.4532410 | -13.2877124 | 1.6392868 | -0.9594750 | -13.2877124 | -13.2877124 | 2.9630318 | 1.8178708 | 2.5012116 | -2.5438768 | 1.6274431 |
| ENSG00000013297 | 1.0068560 | -0.5401569 | 7.224316 | 9.250216 | 0.0034883 | 0.4287718 | ENSG00000013297 | CLDN11 | claudin 11 | 3 | 170418868 | 170454733 | protein_coding | HGNC:8514 | 5.8625523 | 4.8299809 | 5.4294671 | 6.3573889 | 6.9904513 | 6.3607516 | 7.1728680 | 4.5441961 | 5.5239076 | 5.1156646 | 6.8811414 | 5.7259655 |
| ENSG00000129757 | 1.6442648 | -0.7193743 | 4.607129 | 9.258687 | 0.0035448 | 0.4287718 | ENSG00000129757 | CDKN1C | cyclin dependent kinase inhibitor 1C | 11 | 2883213 | 2885775 | protein_coding | HGNC:1786 | 3.3763097 | 1.7399224 | 1.7308004 | 3.6750575 | 4.7294796 | 4.7920510 | 4.0940213 | 2.8126169 | 2.1475317 | 2.5180652 | 4.5710834 | 2.8980493 |
| ENSG00000148798 | -0.4243527 | -1.7654131 | 5.847229 | 9.213513 | 0.0035527 | 0.4287718 | ENSG00000148798 | INA | internexin neuronal intermediate filament protein alpha | 10 | 103277138 | 103290346 | protein_coding | HGNC:6057 | 4.5302429 | 4.4257669 | 4.1631346 | 4.2637918 | 3.0417453 | 4.2729351 | 4.1650510 | 2.5317702 | 2.5886175 | 2.5604738 | 3.9230342 | 4.3527037 |
| ENSG00000171759 | -0.6065601 | -1.8494324 | 5.884319 | 9.201612 | 0.0035697 | 0.4287718 | ENSG00000171759 | PAH | phenylalanine hydroxylase | 12 | 102836889 | 102958410 | protein_coding | HGNC:8582 | 8.8615744 | 8.0264001 | 9.2103454 | 9.7189878 | 8.8526635 | 7.7970263 | 8.6547599 | 7.6677661 | 6.3672376 | 7.1593396 | 8.5021416 | 9.0774946 |
| ENSG00000113209 | 0.0077013 | -3.2293513 | 3.941841 | 8.842074 | 0.0035737 | 0.4287718 | ENSG00000113209 | PCDHB5 | protocadherin beta 5 | 5 | 141135206 | 141138615 | protein_coding | HGNC:8690 | 1.3686896 | 2.3037854 | 1.8251290 | 2.7414154 | 1.0281794 | 2.0283517 | 2.7971047 | -0.7127145 | 0.4630961 | -0.0081976 | 2.1231447 | 2.1497897 |
| ENSG00000131016 | 1.5815387 | 0.0096817 | 5.195991 | 9.217056 | 0.0035742 | 0.4287718 | ENSG00000131016 | AKAP12 | A-kinase anchoring protein 12 | 6 | 151239967 | 151358559 | protein_coding | HGNC:370 | 0.4420326 | 0.9111708 | 2.1448236 | 1.2619291 | 2.8650187 | 2.8657476 | 3.3117439 | 0.3649803 | 1.9951936 | 1.3990508 | 3.0299973 | 1.3305056 |
| ENSG00000158445 | -1.3186466 | -1.0829731 | 4.874255 | 9.218540 | 0.0035786 | 0.4287718 | ENSG00000158445 | KCNB1 | potassium voltage-gated channel subfamily B member 1 | 20 | 49293394 | 49484297 | protein_coding | HGNC:6231 | 2.4195874 | 2.0464020 | 2.7486592 | 2.8005355 | 1.5609194 | 0.5791145 | 1.3624834 | 0.8761637 | 1.7768982 | 1.3957138 | 1.2256087 | 2.5341137 |
| ENSG00000224501 | -0.7701764 | 2.7692727 | 4.439228 | 8.984811 | 0.0036273 | 0.4287718 | ENSG00000224501 | HSPA1B | heat shock protein family A (Hsp70) member 1B | HSCHR6_MHC_COX_CTG1 | 3304988 | 3307511 | protein_coding | HGNC:5233 | -13.2877124 | -13.2877124 | 1.8701497 | 3.4156727 | 0.8843494 | -13.2877124 | 1.7486579 | 3.9161664 | 4.8437891 | 4.4532830 | 0.7953489 | 1.8406916 |
| ENSG00000164284 | -1.2164107 | -1.1996461 | 5.215254 | 9.161019 | 0.0036509 | 0.4287718 | ENSG00000164284 | GRPEL2 | GrpE like 2, mitochondrial | 5 | 149345430 | 149354583 | protein_coding | HGNC:21060 | 3.5707510 | 2.8382699 | 3.8281328 | 3.6369077 | 3.1624292 | 2.6762112 | 1.7996241 | 2.3497242 | 2.8834601 | 2.6411351 | 2.6497233 | 3.5133966 |
| ENSG00000183718 | -1.1399504 | -0.5549888 | 6.630051 | 8.983970 | 0.0038884 | 0.4287718 | ENSG00000183718 | TRIM52 | tripartite motif containing 52 | 5 | 181254077 | 181261150 | protein_coding | HGNC:19024 | 5.7053109 | 5.5212567 | 6.0268919 | 5.6477059 | 4.7228012 | 4.5606351 | 4.7317219 | 5.0859259 | 5.3237322 | 5.2097236 | 4.6738345 | 5.7376878 |
| ENSG00000149968 | -4.9328593 | -3.8525626 | 4.674612 | 8.027462 | 0.0038952 | 0.4287718 | ENSG00000149968 | MMP3 | matrix metallopeptidase 3 | 11 | 102835801 | 102843609 | protein_coding | HGNC:7173 | 1.3861703 | -13.2877124 | 2.8594655 | 6.7411634 | -0.5219725 | 0.0565891 | -0.4868752 | 1.3169034 | 0.0753629 | 0.8257588 | -0.2921855 | 4.8685002 |
| ENSG00000101460 | 0.2070814 | 1.5555497 | 5.833240 | 8.981411 | 0.0039063 | 0.4287718 | ENSG00000101460 | MAP1LC3A | microtubule associated protein 1 light chain 3 alpha | 20 | 34546854 | 34560345 | protein_coding | HGNC:6838 | 4.9437838 | 5.8269495 | 4.9154398 | 6.0734879 | 6.3645221 | 6.0564660 | 5.4147488 | 7.7593890 | 6.7417767 | 7.3385046 | 5.9970652 | 5.5318933 |
| ENSG00000170390 | -0.9098780 | -2.4582871 | 4.038070 | 8.918845 | 0.0039142 | 0.4287718 | ENSG00000170390 | DCLK2 | doublecortin like kinase 2 | 4 | 150078445 | 150257438 | protein_coding | HGNC:19002 | 1.9972071 | 1.8171357 | 2.8232492 | 2.2616614 | 1.3318502 | 0.5521104 | 1.7783604 | 0.0067404 | -0.6387841 | -0.2802146 | 1.3052591 | 2.2771705 |
| ENSG00000100629 | 2.7069922 | 3.2800999 | 3.137887 | 7.710032 | 0.0039899 | 0.4287718 | ENSG00000100629 | CEP128 | centrosomal protein 128 | 14 | 80476983 | 80959517 | protein_coding | HGNC:20359 | -13.2877124 | 1.2425702 | -1.6574362 | 0.5367572 | 1.6040405 | 1.4529111 | -0.8107840 | 3.0590022 | 1.0054733 | 2.3703822 | 1.0812503 | 0.0475412 |
| ENSG00000011028 | 0.9103826 | 0.2508215 | 9.096854 | 8.911028 | 0.0040010 | 0.4287718 | ENSG00000011028 | MRC2 | mannose receptor C-type 2 | 17 | 62627670 | 62693597 | protein_coding | HGNC:16875 | 6.1938101 | 5.9527798 | 5.9598909 | 6.0636948 | 7.5139225 | 6.8082501 | 7.1436629 | 6.3943201 | 6.0083553 | 6.2142066 | 7.1840376 | 6.0458972 |
| ENSG00000237206 | -3.0178448 | -5.5229582 | 4.163669 | 8.217566 | 0.0040649 | 0.4287718 | ENSG00000237206 | IMPDH1P4 | X | 43278125 | 43279658 | processed_pseudogene | HGNC:33959 | 4.7274424 | 2.0490700 | -0.1577066 | 5.8086863 | 0.7826644 | -13.2877124 | 2.4040974 | -0.3804424 | -13.2877124 | -1.3802546 | 1.2251614 | 4.4524927 | |
| ENSG00000214176 | -1.5273632 | 0.3005208 | 4.635458 | 8.848042 | 0.0041092 | 0.4287718 | ENSG00000214176 | PLEKHM1P1 | 17 | 64785259 | 64829208 | transcribed_unprocessed_pseudogene | HGNC:35411 | 2.4302293 | 2.0264304 | 2.7357875 | 2.9381604 | 1.5685444 | 2.6935492 | 0.8617887 | 2.3913608 | 3.8126758 | 3.2703980 | 1.9071949 | 2.5722414 | |
| ENSG00000142552 | 1.1989766 | 1.0505510 | 6.924750 | 8.840585 | 0.0041215 | 0.4287718 | ENSG00000142552 | RCN3 | reticulocalbin 3 | 19 | 49528003 | 49546962 | protein_coding | HGNC:21145 | 5.2512972 | 6.1268831 | 5.2427169 | 5.8470691 | 6.5337028 | 6.8454212 | 7.1357517 | 7.1172814 | 6.1781525 | 6.7228211 | 6.8591107 | 5.6681651 |
| ENSG00000111799 | 1.0524832 | -0.3315360 | 6.692690 | 8.836377 | 0.0041290 | 0.4287718 | ENSG00000111799 | COL12A1 | collagen type XII alpha 1 chain | 6 | 75084326 | 75206267 | protein_coding | HGNC:2188 | 2.5654354 | 3.2379753 | 1.7698957 | 4.9416354 | 3.2056381 | 3.6199185 | 4.3947962 | 2.9180734 | 3.8585955 | 3.4636578 | 3.8263278 | 3.6292284 |
| ENSG00000091129 | -1.2609972 | -2.5766784 | 4.998171 | 8.861025 | 0.0041326 | 0.4287718 | ENSG00000091129 | NRCAM | neuronal cell adhesion molecule | 7 | 108147623 | 108456717 | protein_coding | HGNC:7994 | 3.7648677 | 4.9024440 | 2.5712975 | 4.1007887 | 3.9043890 | 3.2412149 | 3.5237407 | -1.6439599 | 0.9407095 | 0.1631445 | 3.5822083 | 4.0575062 |
| ENSG00000128699 | -2.7005699 | 0.0973517 | 3.896304 | 8.241915 | 0.0041392 | 0.4287718 | ENSG00000128699 | ORMDL1 | ORMDL sphingolipid biosynthesis regulator 1 | 2 | 189766012 | 189784364 | protein_coding | HGNC:16036 | 3.0107090 | 4.2942497 | 3.8243084 | 1.9542641 | 0.3097525 | 1.3996655 | -0.6556987 | 3.6453799 | 3.9281805 | 3.7936986 | 0.5890175 | 3.5147607 |
| ENSG00000106511 | 4.4061047 | 4.0736191 | 3.424041 | 7.881008 | 0.0041460 | 0.4287718 | ENSG00000106511 | MEOX2 | mesenchyme homeobox 2 | 7 | 15611212 | 15686683 | protein_coding | HGNC:7014 | -13.2877124 | -1.0179750 | -0.9088269 | -13.2877124 | 1.8384355 | 1.6131167 | 3.5881074 | 3.3320474 | -1.3637499 | 2.3866674 | 2.6370326 | -1.9620876 |
| ENSG00000168477 | 3.0385896 | 4.2795468 | 4.131288 | 7.927390 | 0.0042023 | 0.4287718 | ENSG00000168477 | TNXB | tenascin XB | 6 | 32041153 | 32115334 | protein_coding | HGNC:11976 | -1.1406792 | -13.2877124 | -13.2877124 | -13.2877124 | 1.8195668 | -13.2877124 | 3.0645763 | 0.4419986 | 1.7236001 | 1.2206643 | 1.9874511 | -3.1397253 |
| ENSG00000185627 | 1.3400485 | 0.2377634 | 4.689533 | 8.825606 | 0.0042160 | 0.4287718 | ENSG00000185627 | PSMD13 | proteasome 26S subunit, non-ATPase 13 | 11 | 236966 | 252984 | protein_coding | HGNC:9558 | 2.7913617 | 4.2875254 | 3.5079927 | 3.8035858 | 4.6733912 | 4.7091920 | 4.8597590 | 3.1414621 | 3.7709761 | 3.4902852 | 4.7497316 | 3.6946462 |
| ENSG00000075043 | -2.1994908 | -2.3725545 | 4.639640 | 8.750415 | 0.0042590 | 0.4287718 | ENSG00000075043 | KCNQ2 | potassium voltage-gated channel subfamily Q member 2 | 20 | 63400208 | 63472677 | protein_coding | HGNC:6296 | 3.1177097 | 0.3758190 | 1.4678987 | 4.2226695 | -0.6960451 | 1.1980088 | -0.3763241 | -0.8240756 | 1.8213661 | 1.0352720 | 0.2954832 | 2.9733405 |
| ENSG00000152580 | 1.0574497 | -0.3063813 | 5.439487 | 8.772427 | 0.0042605 | 0.4287718 | ENSG00000152580 | IGSF10 | immunoglobulin superfamily member 10 | 3 | 151425384 | 151461061 | protein_coding | HGNC:26384 | 2.5572143 | 3.3803137 | 1.5150529 | 1.7353874 | 1.8953844 | 2.2814704 | 3.1595748 | 1.2495904 | 0.5909766 | 0.9575447 | 2.5457712 | 2.4909862 |
| ENSG00000133433 | -4.3829950 | 2.6851651 | 3.139940 | 8.986392 | 0.0042796 | 0.4287718 | ENSG00000133433 | GSTT2B | glutathione S-transferase theta 2B | 22 | 23957414 | 23961195 | protein_coding | HGNC:33437 | 2.8912368 | -13.2877124 | 3.0599253 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 4.1530527 | 4.5632170 | 4.3726625 | -13.2877124 | 1.9780634 |
| ENSG00000168646 | 1.3068478 | 1.3498782 | 5.204400 | 8.706255 | 0.0044028 | 0.4313448 | ENSG00000168646 | AXIN2 | axin 2 | 17 | 65528563 | 65561648 | protein_coding | HGNC:904 | 1.8569729 | 3.3997448 | 2.5545731 | 2.1519857 | 3.5952640 | 4.3446904 | 4.0019497 | 3.9959806 | 3.1917079 | 3.6491788 | 4.0127381 | 2.6144738 |
| ENSG00000167194 | -1.2218006 | -1.5017236 | 6.838620 | 8.650680 | 0.0044600 | 0.4313448 | ENSG00000167194 | C16orf92 | chromosome 16 open reading frame 92 | 16 | 30023198 | 30027736 | protein_coding | HGNC:26346 | 7.5980307 | 7.8621361 | 8.4976735 | 7.2177287 | 6.9124641 | 6.1600109 | 6.8219465 | 5.4780698 | 6.8270342 | 6.3047879 | 6.6682228 | 7.8714786 |
| ENSG00000231945 | 3.8672056 | 2.2851958 | 3.723439 | 7.682559 | 0.0044765 | 0.4313448 | ENSG00000231945 | VARS1 | valyl-tRNA synthetase 1 | HSCHR6_MHC_SSTO_CTG1 | 3076809 | 3094270 | protein_coding | HGNC:12651 | -13.2877124 | 2.9477286 | 1.6345826 | -13.2877124 | 3.9421330 | 3.4833975 | 2.9152440 | -13.2877124 | 4.4787320 | 3.4787385 | 3.5066842 | 1.4356969 |
| ENSG00000165124 | 1.6017275 | 0.1472836 | 4.161927 | 8.666722 | 0.0045082 | 0.4313448 | ENSG00000165124 | SVEP1 | sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 | 9 | 110365248 | 110579880 | protein_coding | HGNC:15985 | 0.6463138 | 1.6491891 | 0.8977833 | 0.7009599 | 2.0161201 | 1.0922129 | 1.6648696 | 1.2182784 | 1.2962354 | 1.2577831 | 1.6396647 | 1.0339558 |
| ENSG00000087116 | 1.6381750 | 0.1899116 | 5.347694 | 8.610366 | 0.0045720 | 0.4313448 | ENSG00000087116 | ADAMTS2 | ADAM metallopeptidase with thrombospondin type 1 motif 2 | 5 | 179110853 | 179345461 | protein_coding | HGNC:218 | 2.3586857 | 0.9220540 | 1.1408271 | 1.0849643 | 2.8336928 | 3.1517827 | 3.6698233 | 2.0737013 | 1.2470410 | 1.7187877 | 3.2602024 | 1.5046504 |
| ENSG00000273579 | -2.6104231 | -0.3806555 | 4.594024 | 8.407303 | 0.0046392 | 0.4313448 | ENSG00000273579 | C22orf15 | chromosome 22 open reading frame 15 | HSCHR22_1_CTG7 | 449 | 2223 | protein_coding | HGNC:15558 | 5.3603064 | 5.2121093 | 4.6026697 | 3.2329953 | 1.5888674 | -13.2877124 | 2.4317885 | 4.0120558 | 4.6490088 | 4.3654024 | 1.4860877 | 4.8053582 |
| ENSG00000152049 | -0.1731529 | -3.4937966 | 5.137625 | 8.431988 | 0.0047669 | 0.4313448 | ENSG00000152049 | KCNE4 | potassium voltage-gated channel subfamily E regulatory subunit 4 | 2 | 223052190 | 223198399 | protein_coding | HGNC:6244 | 4.4404752 | 2.6221106 | 2.2564992 | 4.2200811 | 3.2535817 | 2.2535594 | 4.1157755 | -0.0724873 | 0.1100024 | 0.0216418 | 3.3988429 | 3.6804485 |
| ENSG00000265188 | -1.0587682 | -0.3303832 | 7.222717 | 8.486549 | 0.0047757 | 0.4313448 | ENSG00000265188 | 18 | 5240255 | 5241167 | processed_pseudogene | 7.7706445 | 7.7763960 | 8.2015755 | 8.2201507 | 6.6854408 | 6.4499758 | 7.4765019 | 7.5226118 | 7.7080427 | 7.6183040 | 6.9403406 | 8.0087194 | |||
| ENSG00000167281 | -1.2208723 | -1.5464322 | 5.206941 | 8.495641 | 0.0048024 | 0.4313448 | ENSG00000167281 | RBFOX3 | RNA binding fox-1 homolog 3 | 17 | 79089345 | 79611051 | protein_coding | HGNC:27097 | 3.5875257 | 4.7695503 | 4.8513756 | 5.0723739 | 3.0976740 | 6.2294224 | 3.5368940 | 2.6468449 | 2.9617009 | 2.8128453 | 4.9879047 | 4.6697485 |
| ENSG00000274287 | 7.4401098 | 0.0000000 | 3.427692 | 10.787199 | 0.0048491 | 0.4313448 | ENSG00000274287 | SCRIB | scribble planar cell polarity protein | HSCHR8_3_CTG7 | 267967 | 292426 | protein_coding | HGNC:30377 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 3.1013647 | 2.3669253 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 2.1954323 | -13.2877124 |
| ENSG00000285991 | 0.7139603 | -3.2688554 | 4.265035 | 8.141456 | 0.0048529 | 0.4313448 | ENSG00000285991 | 6 | 149817937 | 149896011 | protein_coding | 1.7718919 | 1.3045835 | 2.1635267 | 0.5116472 | 0.3181849 | 1.8719272 | 3.2136568 | -1.8075230 | -1.9010200 | -1.8535142 | 2.2412263 | 1.5596023 | |||
| ENSG00000100416 | 0.7234801 | 1.5370818 | 5.182004 | 8.470939 | 0.0048580 | 0.4313448 | ENSG00000100416 | TRMU | tRNA mitochondrial 2-thiouridylase | 22 | 46330875 | 46357340 | protein_coding | HGNC:25481 | 3.1865584 | 3.3053660 | 3.0463821 | 4.1410795 | 4.6679098 | 5.1275770 | 4.1490724 | 5.7445174 | 4.1845272 | 5.1658388 | 4.7026697 | 3.4884919 |
| ENSG00000116132 | 0.6799501 | -0.2830854 | 6.922411 | 8.443599 | 0.0048631 | 0.4313448 | ENSG00000116132 | PRRX1 | paired related homeobox 1 | 1 | 170662728 | 170739421 | protein_coding | HGNC:9142 | 6.0888863 | 5.0262286 | 5.2937703 | 5.3380810 | 6.1979435 | 6.4967551 | 5.8357480 | 5.0079404 | 4.3460707 | 4.7146335 | 6.2018385 | 5.4945071 |
| ENSG00000072682 | 1.0447225 | 0.4800907 | 6.911663 | 8.438557 | 0.0048740 | 0.4313448 | ENSG00000072682 | P4HA2 | prolyl 4-hydroxylase subunit alpha 2 | 5 | 132190147 | 132295315 | protein_coding | HGNC:8547 | 5.7447451 | 5.9514185 | 6.4477921 | 6.5702442 | 7.1553120 | 7.1059454 | 7.5858154 | 6.7687605 | 5.7904497 | 6.3609891 | 7.2989511 | 6.2183013 |
| ENSG00000135956 | 0.3127950 | 0.9918446 | 6.334776 | 8.407702 | 0.0049424 | 0.4318293 | ENSG00000135956 | TMEM127 | transmembrane protein 127 | 2 | 96248500 | 96266047 | protein_coding | HGNC:26038 | 5.2867790 | 2.9487186 | 4.6533015 | 3.3638649 | 3.6701692 | 5.2464254 | 5.5814047 | 5.4064141 | 4.7027115 | 5.0970499 | 5.0381482 | 4.3613655 |
| ENSG00000145604 | -0.0674108 | 2.3094997 | 3.231060 | 7.785965 | 0.0049997 | 0.4318293 | ENSG00000145604 | SKP2 | S-phase kinase associated protein 2 | 5 | 36151989 | 36196849 | protein_coding | HGNC:10901 | -1.5587375 | 0.6644583 | -0.1612354 | 2.5400870 | 0.7791345 | 1.3547788 | -0.0948478 | 3.8541506 | 3.1278861 | 3.5362447 | 0.7963353 | 1.1101828 |
| ENSG00000175595 | -1.6277830 | -2.1030738 | 3.627374 | 8.192174 | 0.0050014 | 0.4318293 | ENSG00000175595 | ERCC4 | ERCC excision repair 4, endonuclease catalytic subunit | 16 | 13920138 | 13952348 | protein_coding | HGNC:3436 | 3.3597654 | 2.4699690 | 1.6349162 | 4.0262887 | -0.2921625 | 2.6742810 | 1.2637616 | 0.0968178 | 0.4194073 | 0.2671103 | 1.6782360 | 3.1377484 |
| ENSG00000130226 | 3.0639949 | -0.1550017 | 3.100887 | 7.284152 | 0.0052204 | 0.4349949 | ENSG00000130226 | DPP6 | dipeptidyl peptidase like 6 | 7 | 153748133 | 154894285 | protein_coding | HGNC:3010 | -1.1606015 | -13.2877124 | -13.2877124 | 0.8572732 | 2.7175543 | 0.0806781 | 2.0355532 | -13.2877124 | -0.8903132 | -1.8900458 | 1.9677689 | -0.8242284 |
| ENSG00000140543 | 2.3519019 | 0.4327232 | 3.175403 | 7.754878 | 0.0052253 | 0.4349949 | ENSG00000140543 | DET1 | DET1 partner of COP1 E3 ubiquitin ligase | 15 | 88494440 | 88546681 | protein_coding | HGNC:25477 | -0.7065707 | 0.2392966 | 0.2827399 | -0.3226316 | 2.5322514 | 1.3800367 | 2.7252545 | 0.0323915 | 0.9970416 | 0.5938839 | 2.3219527 | -0.0704721 |
| ENSG00000237733 | -6.5282245 | -2.1057215 | 3.258837 | 8.962478 | 0.0052512 | 0.4349949 | ENSG00000237733 | RNF39 | ring finger protein 39 | HSCHR6_MHC_MANN_CTG1 | 1331016 | 1336637 | protein_coding | HGNC:18064 | 3.2868770 | 2.1013391 | 2.9263995 | 2.4978974 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 1.5280331 | 0.5280832 | -13.2877124 | 2.7709227 |
| ENSG00000143369 | -0.1883317 | 0.8359761 | 8.253523 | 8.232335 | 0.0053192 | 0.4349949 | ENSG00000143369 | ECM1 | extracellular matrix protein 1 | 1 | 150508062 | 150513789 | protein_coding | HGNC:3153 | 7.1287008 | 7.2200385 | 6.8412514 | 6.7307894 | 7.1248110 | 6.9069356 | 6.5760270 | 7.8116607 | 7.8603092 | 7.8361899 | 6.8866221 | 6.9940909 |
| ENSG00000151150 | -1.4795040 | -3.1532331 | 4.294317 | 8.137380 | 0.0053368 | 0.4349949 | ENSG00000151150 | ANK3 | ankyrin 3 | 10 | 60026298 | 60733490 | protein_coding | HGNC:494 | 2.1518770 | 4.0123221 | 2.9873862 | 1.8235924 | -0.0957834 | 2.4589011 | -0.1018102 | -13.2877124 | -0.1084097 | -1.1082542 | 1.2958417 | 3.0023097 |
| ENSG00000204463 | -7.4664971 | 1.6041210 | 5.071158 | 9.043889 | 0.0053494 | 0.4349949 | ENSG00000204463 | BAG6 | BAG cochaperone 6 | 6 | 31639028 | 31652705 | protein_coding | HGNC:13919 | -13.2877124 | 1.3095802 | 4.5203894 | 2.9801151 | -13.2877124 | -13.2877124 | -13.2877124 | 5.2280725 | 2.9699578 | 4.5019405 | -13.2877124 | 3.0582630 |
| ENSG00000138119 | 1.2282000 | 0.1992036 | 5.765165 | 8.216839 | 0.0053730 | 0.4349949 | ENSG00000138119 | MYOF | myoferlin | 10 | 93306429 | 93482334 | protein_coding | HGNC:3656 | 1.8822991 | 2.4482645 | 1.4233184 | 2.9032414 | 3.3631050 | 4.0441808 | 3.8811218 | 2.7731710 | 1.8801060 | 2.3946664 | 3.7908257 | 2.2710733 |
| ENSG00000146221 | -1.5177810 | -1.8557893 | 6.635486 | 8.159539 | 0.0054971 | 0.4349949 | ENSG00000146221 | TCTE1 | t-complex-associated-testis-expressed 1 | 6 | 44278734 | 44297698 | protein_coding | HGNC:11693 | 5.4675470 | 5.9553555 | 5.4558512 | 5.0694377 | 2.3019218 | 3.9407953 | 4.7835570 | 4.1452634 | 2.9664964 | 3.6730634 | 3.9948738 | 5.5217327 |
| ENSG00000143341 | 0.7724519 | -0.2244021 | 6.844883 | 8.127478 | 0.0055675 | 0.4349949 | ENSG00000143341 | HMCN1 | hemicentin 1 | 1 | 185734391 | 186190949 | protein_coding | HGNC:19194 | 2.8563396 | 3.8990044 | 2.1698285 | 2.6779885 | 3.3494404 | 4.0845814 | 4.8242772 | 3.1644233 | 2.4509024 | 2.8513317 | 4.2091667 | 3.0469850 |
| ENSG00000074181 | 0.9305804 | 0.1344988 | 6.438354 | 8.112033 | 0.0056076 | 0.4349949 | ENSG00000074181 | NOTCH3 | notch receptor 3 | 19 | 15159038 | 15200995 | protein_coding | HGNC:7883 | 2.7526687 | 2.8495614 | 2.1140105 | 3.1613148 | 3.7979116 | 3.9934409 | 3.5473405 | 3.0458525 | 3.3047095 | 3.1810789 | 3.7910221 | 2.7667444 |
| ENSG00000128050 | -1.0320997 | -0.7023855 | 6.116953 | 8.113268 | 0.0056120 | 0.4349949 | ENSG00000128050 | PAICS | phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase | 4 | 56435741 | 56464578 | protein_coding | HGNC:8587 | 4.2637672 | 3.3129377 | 3.7189388 | 3.9289901 | 2.8416473 | 3.0982592 | 2.6091599 | 3.6491169 | 3.1764286 | 3.4320458 | 2.8635230 | 3.8466673 |
| ENSG00000183049 | -2.6662782 | -0.3539371 | 3.500310 | 7.460347 | 0.0056732 | 0.4349949 | ENSG00000183049 | CAMK1D | calcium/calmodulin dependent protein kinase ID | 10 | 12349547 | 12835545 | protein_coding | HGNC:19341 | 0.4982304 | 0.2306137 | 1.1634569 | -0.4718208 | -1.8962647 | -2.3071301 | -2.8655214 | -0.0499303 | 1.0128075 | 0.5771591 | -2.3030283 | 0.4716564 |
| ENSG00000137142 | -0.4207992 | -1.0417564 | 6.250394 | 8.069050 | 0.0057149 | 0.4349949 | ENSG00000137142 | IGFBPL1 | insulin like growth factor binding protein like 1 | 9 | 38406528 | 38424454 | protein_coding | HGNC:20081 | 4.6196143 | 4.2080548 | 4.6408799 | 4.7338562 | 4.2042896 | 3.9110715 | 4.2361565 | 3.4249876 | 3.5383878 | 3.4828018 | 4.1244117 | 4.5641227 |
| ENSG00000125734 | 1.4770669 | 0.8628655 | 4.276008 | 8.100962 | 0.0057240 | 0.4349949 | ENSG00000125734 | GPR108 | G protein-coupled receptor 108 | 19 | 6729914 | 6737580 | protein_coding | HGNC:17829 | 3.5055529 | 3.2959659 | 2.4313071 | 3.1829063 | 4.6968216 | 3.6571640 | 3.8679620 | 3.5605363 | 3.9058801 | 3.7435169 | 4.1470727 | 3.1559983 |
| ENSG00000128564 | -1.6976152 | -1.3610587 | 4.975245 | 8.070837 | 0.0057633 | 0.4349949 | ENSG00000128564 | VGF | VGF nerve growth factor inducible | 7 | 101162509 | 101165569 | protein_coding | HGNC:12684 | 4.7188771 | 4.5188108 | 4.5626734 | 3.8812955 | 2.9881399 | 1.5412373 | 3.0248108 | 2.1050223 | 3.3241251 | 2.8396859 | 2.6617277 | 4.4533048 |
| ENSG00000204624 | -2.1146580 | -2.5966127 | 4.282143 | 7.954449 | 0.0058148 | 0.4349949 | ENSG00000204624 | DISP3 | dispatched RND transporter family member 3 | 1 | 11479155 | 11537551 | protein_coding | HGNC:29251 | 1.2823752 | 2.0436136 | 1.9133000 | 3.7429971 | -2.2336508 | 1.9804922 | 0.7966600 | 0.6114160 | -2.6165606 | -0.2422820 | 0.9747672 | 2.5674878 |
| ENSG00000112246 | 1.0933997 | 2.1793292 | 4.514278 | 8.046413 | 0.0058552 | 0.4349949 | ENSG00000112246 | SIM1 | SIM bHLH transcription factor 1 | 6 | 100385009 | 100464921 | protein_coding | HGNC:10882 | -3.0099833 | 0.8295411 | 0.8470925 | 2.1145213 | 0.5126567 | 1.3730440 | 2.2169105 | 2.2680022 | 3.0461991 | 2.7089469 | 1.5303719 | 1.0055063 |
| ENSG00000196352 | 1.5939106 | 0.7087874 | 5.341813 | 8.023112 | 0.0058708 | 0.4349949 | ENSG00000196352 | CD55 | CD55 molecule (Cromer blood group) | 1 | 207321519 | 207386804 | protein_coding | HGNC:2665 | 4.3989807 | 2.1397717 | 4.1632416 | 3.4452954 | 5.2359703 | 4.9959683 | 5.2091597 | 4.4569693 | 4.2626323 | 4.3630708 | 5.1509593 | 3.7632437 |
| ENSG00000106333 | 0.9577534 | 0.6803134 | 7.872098 | 8.002408 | 0.0058761 | 0.4349949 | ENSG00000106333 | PCOLCE | procollagen C-endopeptidase enhancer | 7 | 100602363 | 100608175 | protein_coding | HGNC:8738 | 6.9611863 | 6.6907630 | 6.7855181 | 6.7472407 | 7.6936402 | 7.4915330 | 8.0451573 | 7.7952536 | 7.0216313 | 7.4596882 | 7.7618211 | 6.7997789 |
| ENSG00000136999 | -2.3287477 | -2.5646982 | 4.084775 | 7.834218 | 0.0058881 | 0.4349949 | ENSG00000136999 | CCN3 | cellular communication network factor 3 | 8 | 119416446 | 119424434 | protein_coding | HGNC:7885 | 2.0562769 | 3.4228580 | 4.0279396 | 3.8505414 | 1.7754459 | -0.4493239 | 0.5864112 | 1.8099499 | -13.2877124 | 0.8099906 | 0.9151591 | 3.5116597 |
| ENSG00000113212 | -0.7743873 | -2.9250957 | 3.801585 | 7.811054 | 0.0058982 | 0.4349949 | ENSG00000113212 | PCDHB7 | protocadherin beta 7 | 5 | 141172644 | 141176383 | protein_coding | HGNC:8692 | 1.6724873 | 2.3276514 | 2.1532505 | 2.0317311 | 1.8708192 | 1.4566490 | -0.0973599 | -0.2846601 | -2.1004160 | -0.9239527 | 1.2901973 | 2.0656371 |
| ENSG00000180447 | 1.1312694 | -0.4053562 | 4.992494 | 7.980349 | 0.0059939 | 0.4371239 | ENSG00000180447 | GAS1 | growth arrest specific 1 | 9 | 86944362 | 86947506 | protein_coding | HGNC:4165 | 2.9545254 | 2.5243022 | 1.8010688 | 3.1646824 | 4.1858340 | 3.2431850 | 3.8888114 | 2.5845361 | 1.8820510 | 2.2756350 | 3.8238041 | 2.6980437 |
| ENSG00000100968 | 1.3122341 | -0.0034281 | 5.307020 | 7.966868 | 0.0060094 | 0.4371239 | ENSG00000100968 | NFATC4 | nuclear factor of activated T cells 4 | 14 | 24365673 | 24379604 | protein_coding | HGNC:7778 | 2.4096405 | 1.9739404 | 4.7088996 | 3.2605939 | 4.6613416 | 5.7011489 | 5.4589492 | 3.1869765 | 4.5262768 | 4.0067612 | 5.3376601 | 3.4911630 |
| ENSG00000206435 | 8.7713842 | 0.0000000 | 4.544569 | 9.917605 | 0.0061821 | 0.4466241 | ENSG00000206435 | HLA-C | major histocompatibility complex, class I, C | HSCHR6_MHC_SSTO_CTG1 | 2570707 | 2574099 | protein_coding | HGNC:4933 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 3.4061415 | 7.0861003 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 5.6095266 | -13.2877124 |
| ENSG00000133083 | 1.1989274 | -0.3310637 | 5.251683 | 7.863617 | 0.0062897 | 0.4502563 | ENSG00000133083 | DCLK1 | doublecortin like kinase 1 | 13 | 35768652 | 36131382 | protein_coding | HGNC:2700 | 2.4552020 | 2.7279213 | 1.4549818 | 2.5952002 | 4.0440093 | 3.4800980 | 3.2028794 | 3.0265342 | 1.0636141 | 2.3559550 | 3.6191099 | 2.3849591 |
| ENSG00000130635 | 1.4021842 | 0.2356279 | 10.688110 | 7.836971 | 0.0063176 | 0.4502563 | ENSG00000130635 | COL5A1 | collagen type V alpha 1 chain | 9 | 134641803 | 134844843 | protein_coding | HGNC:2209 | 6.9270598 | 7.2012251 | 5.8185884 | 6.6953617 | 8.1819054 | 7.7001257 | 8.4132381 | 7.5683774 | 6.0063233 | 6.9891765 | 8.1280186 | 6.7445648 |
| ENSG00000118971 | -0.3231362 | -1.3184605 | 8.048275 | 7.793588 | 0.0064405 | 0.4502563 | ENSG00000118971 | CCND2 | cyclin D2 | 12 | 4269771 | 4305353 | protein_coding | HGNC:1583 | 4.8798649 | 5.4253738 | 5.0378243 | 6.3577985 | 4.8974893 | 5.0457979 | 5.3897067 | 4.0067573 | 4.2247455 | 4.1198649 | 5.1259998 | 5.5490589 |
| ENSG00000272674 | 0.0471595 | -2.2492789 | 4.523672 | 7.794279 | 0.0064492 | 0.4502563 | ENSG00000272674 | PCDHB16 | protocadherin beta 16 | 5 | 141182387 | 141186226 | protein_coding | HGNC:14546 | 4.0376383 | 2.2135293 | 0.7611346 | 2.5590468 | 2.7026569 | 1.6019213 | 1.9976028 | 0.0877561 | -0.4350658 | -0.1501000 | 2.1740686 | 2.8404131 |
| ENSG00000205978 | 0.3759911 | -4.7604448 | 4.213784 | 7.481156 | 0.0064773 | 0.4502563 | ENSG00000205978 | NYNRIN | NYN domain and retroviral integrase containing | 14 | 24399003 | 24419283 | protein_coding | HGNC:20165 | 1.7218101 | 0.4809992 | -0.4159245 | 1.5651521 | -0.7979823 | 1.1125440 | 2.4020299 | -2.9505254 | -13.2877124 | -3.9494105 | 1.4191581 | 1.0708763 |
| ENSG00000108821 | 1.6012224 | 0.2835851 | 13.223743 | 7.777242 | 0.0064867 | 0.4502563 | ENSG00000108821 | COL1A1 | collagen type I alpha 1 chain | 17 | 50184101 | 50201632 | protein_coding | HGNC:2197 | 11.2463341 | 10.5483855 | 9.8668102 | 10.7105311 | 11.5061251 | 11.8747109 | 12.7913025 | 11.4349320 | 9.9779847 | 10.8830542 | 12.1624559 | 10.6742453 |
| ENSG00000188517 | 2.8014503 | 0.0088735 | 3.120551 | 7.016486 | 0.0065879 | 0.4543086 | ENSG00000188517 | COL25A1 | collagen type XXV alpha 1 chain | 4 | 108808725 | 109302752 | protein_coding | HGNC:18603 | -2.1057092 | -13.2877124 | -0.3257491 | -0.2075977 | 4.6972044 | 1.8051649 | 2.3571880 | -13.2877124 | 0.4407726 | -0.5591211 | 3.5260754 | -1.0768134 |
| ENSG00000272899 | -1.4148774 | -3.0807599 | 5.521882 | 7.735182 | 0.0066616 | 0.4564302 | ENSG00000272899 | SPMIP1 | sperm microtubule inner protein 1 | 7 | 128866330 | 128872047 | protein_coding | HGNC:52392 | 2.1650874 | 2.6513486 | 5.2516276 | 4.4687341 | 1.9378506 | 1.9933360 | 3.4389297 | 0.8893287 | 1.0209232 | 0.9566254 | 2.6367364 | 4.1498971 |
| ENSG00000285362 | 4.3010726 | 2.8749445 | 3.828361 | 6.791732 | 0.0067086 | 0.4566981 | ENSG00000285362 | HSCHR7_3_CTG4_4 | 253977 | 254270 | protein_coding | -13.2877124 | -0.2263581 | -13.2877124 | -0.4254102 | 4.0136770 | 3.4676455 | -13.2877124 | -13.2877124 | 3.0446323 | 2.0446498 | 3.1813841 | -1.3222737 | |||
| ENSG00000079689 | -4.9647721 | -2.3322238 | 3.623991 | 7.382232 | 0.0069470 | 0.4607281 | ENSG00000079689 | SCGN | secretagogin, EF-hand calcium binding protein | 6 | 25652201 | 25701783 | protein_coding | HGNC:16941 | -0.1571740 | 4.9354718 | 4.1699647 | 2.6985828 | -13.2877124 | -13.2877124 | -0.0152707 | 2.0206057 | 0.5339929 | 1.4608663 | -1.5999417 | 3.8070759 |
| ENSG00000135437 | -0.0961390 | 2.4257742 | 3.502740 | 7.270975 | 0.0069696 | 0.4607281 | ENSG00000135437 | RDH5 | retinol dehydrogenase 5 | 12 | 55720367 | 55724705 | protein_coding | HGNC:9940 | 2.9090309 | 4.1310014 | -13.2877124 | 4.1065705 | 3.2842387 | -13.2877124 | 3.8832700 | 5.3332289 | 4.8471695 | 5.1105729 | 3.0296679 | 3.4011780 |
| ENSG00000025039 | -0.7923951 | -2.8896603 | 3.763954 | 7.444591 | 0.0069699 | 0.4607281 | ENSG00000025039 | RRAGD | Ras related GTP binding D | 6 | 89364616 | 89412273 | protein_coding | HGNC:19903 | 2.0548735 | 1.9192329 | 0.8196772 | 2.9775913 | 0.1981056 | 3.1070998 | 1.2290944 | -0.9804546 | -1.5073408 | -1.2199772 | 2.0129114 | 2.1357813 |
| ENSG00000135185 | -1.2713751 | 0.5366262 | 4.598665 | 7.618665 | 0.0069951 | 0.4607281 | ENSG00000135185 | TMEM243 | transmembrane protein 243 | 7 | 87196160 | 87220587 | protein_coding | HGNC:21707 | 5.0952562 | 5.1947237 | 6.2304970 | 6.4652926 | 5.4429972 | 3.3361968 | 4.6524244 | 6.5138625 | 5.6006114 | 6.1283247 | 4.7142444 | 5.8719289 |
| ENSG00000085871 | -1.3954193 | -2.2220853 | 3.591343 | 7.442382 | 0.0070475 | 0.4607281 | ENSG00000085871 | MGST2 | microsomal glutathione S-transferase 2 | 4 | 139665768 | 139740745 | protein_coding | HGNC:7063 | 3.9094650 | 4.9891103 | 4.4293401 | 4.4980325 | 3.6112157 | 3.5365601 | 1.1387548 | 2.3051633 | 1.7542547 | 2.0558471 | 3.1169389 | 4.5066626 |
| ENSG00000137285 | 1.3416318 | -0.0741214 | 6.239504 | 7.536871 | 0.0072343 | 0.4607281 | ENSG00000137285 | TUBB2B | tubulin beta 2B class IIb | 6 | 3223324 | 3231730 | protein_coding | HGNC:30829 | 4.4626807 | 4.8243355 | 3.0297801 | 5.4407154 | 5.6230173 | 6.0281825 | 6.2421609 | 4.3659083 | 4.7036050 | 4.5446146 | 5.9867318 | 4.6721543 |
| ENSG00000166428 | -0.9042634 | 0.4047889 | 6.684069 | 7.524184 | 0.0072723 | 0.4607281 | ENSG00000166428 | PLD4 | phospholipase D family member 4 | 14 | 104924713 | 104937761 | protein_coding | HGNC:23792 | 4.9267799 | 4.5310843 | 5.1229968 | 4.0584620 | 4.0053876 | 3.8324228 | 3.9425315 | 4.4418486 | 5.7840372 | 5.2637041 | 3.9285418 | 4.7148802 |
| ENSG00000285938 | 0.2597741 | 1.6691961 | 4.205322 | 7.546736 | 0.0073020 | 0.4607281 | ENSG00000285938 | BCL6-AS1 | BCL6 antisense RNA 1 | 3 | 187743686 | 187793553 | lncRNA | HGNC:51843 | 2.8022331 | 3.2733106 | 2.9800094 | 3.9775184 | 3.6577735 | 3.9041508 | 3.1832323 | 5.4525560 | 4.3031177 | 4.9894052 | 3.6118062 | 3.3322181 |
| ENSG00000206466 | -3.4073422 | -3.9775927 | 3.879305 | 6.777482 | 0.0074282 | 0.4607281 | ENSG00000206466 | GABBR1 | gamma-aminobutyric acid type B receptor subunit 1 | HSCHR6_MHC_MCF_CTG1 | 821016 | 898553 | protein_coding | HGNC:4070 | -13.2877124 | 3.4642513 | 2.9129108 | 3.4304370 | -13.2877124 | -13.2877124 | 0.3307029 | 0.7571778 | -13.2877124 | -0.2427369 | -1.2540303 | 2.8752594 |
| ENSG00000188322 | -1.1349406 | -3.8716705 | 3.729095 | 7.067061 | 0.0074892 | 0.4607281 | ENSG00000188322 | SBK1 | SH3 domain binding kinase 1 | 16 | 28259246 | 28323849 | protein_coding | HGNC:17699 | 1.6872739 | 1.2645202 | -1.0903022 | 2.7330664 | -0.1505659 | 1.4366085 | -0.1195527 | -2.3045406 | -2.5335264 | -2.4144951 | 0.5939778 | 1.6714389 |
| ENSG00000061656 | -1.9387831 | -2.0836150 | 3.754607 | 7.274735 | 0.0075653 | 0.4607281 | ENSG00000061656 | SPAG4 | sperm associated antigen 4 | 20 | 35615829 | 35621094 | protein_coding | HGNC:11214 | 4.0090978 | 4.5777019 | 3.6223293 | 4.6570480 | 3.1330515 | 2.0408423 | 0.9184572 | 3.0055811 | 0.2123676 | 2.2000014 | 2.3004005 | 4.2765944 |
| ENSG00000166741 | 1.1748094 | 0.1148829 | 5.183245 | 7.441269 | 0.0075967 | 0.4607281 | ENSG00000166741 | NNMT | nicotinamide N-methyltransferase | 11 | 114257787 | 114313536 | protein_coding | HGNC:7861 | 4.5403241 | 4.3211009 | 4.2199410 | 5.9206439 | 5.1485007 | 5.9692185 | 5.7457471 | 5.2864284 | 4.3733016 | 4.9009339 | 5.6608493 | 4.9362492 |
| ENSG00000107736 | -1.3515631 | -0.5743849 | 5.912052 | 7.433514 | 0.0075971 | 0.4607281 | ENSG00000107736 | CDH23 | cadherin related 23 | 10 | 71396920 | 71815947 | protein_coding | HGNC:13733 | 3.9464344 | 4.0523215 | 3.7057716 | 3.2587812 | 1.4415531 | 1.9764700 | 2.9513565 | 3.1349155 | 2.2650678 | 2.7645795 | 2.2616494 | 3.7715587 |
| ENSG00000259192 | -2.0505017 | -3.3603133 | 3.205361 | 6.784399 | 0.0076074 | 0.4607281 | ENSG00000259192 | 15 | 38458760 | 38459540 | processed_pseudogene | 4.8027249 | 4.8863310 | 4.0242303 | 3.3104572 | 3.1583937 | 2.7093332 | -13.2877124 | 0.9767969 | 0.6961897 | 0.8433053 | 2.3663124 | 4.3867694 | |||
| ENSG00000171246 | -0.6496216 | -2.3665437 | 5.046413 | 7.437721 | 0.0076172 | 0.4607281 | ENSG00000171246 | NPTX1 | neuronal pentraxin 1 | 17 | 80466834 | 80477843 | protein_coding | HGNC:7952 | 3.2328942 | 1.8419554 | 3.4834098 | 2.1992442 | 2.5232628 | 1.6255057 | 2.3858413 | -0.8531441 | 1.0335668 | 0.3788756 | 2.2286439 | 2.8461531 |
| ENSG00000185008 | -1.3740743 | -1.5996680 | 4.790371 | 7.432890 | 0.0076593 | 0.4607281 | ENSG00000185008 | ROBO2 | roundabout guidance receptor 2 | 3 | 75906695 | 77649964 | protein_coding | HGNC:10250 | 0.3598922 | 3.5787274 | 2.6501704 | 4.1373714 | 4.0375723 | 3.0318204 | 2.4781984 | 0.1331979 | 3.4161900 | 2.5572768 | 3.3302040 | 3.2136344 |
| ENSG00000149257 | 1.1379504 | 0.1854030 | 8.802167 | 7.401552 | 0.0076800 | 0.4607281 | ENSG00000149257 | SERPINH1 | serpin family H member 1 | 11 | 75562056 | 75572783 | protein_coding | HGNC:1546 | 7.2153154 | 7.3002662 | 6.8718639 | 7.0887086 | 8.1019334 | 8.1523839 | 8.8414337 | 8.0432376 | 6.2751082 | 7.4146167 | 8.4065167 | 7.1278840 |
| ENSG00000133110 | 1.8717287 | -0.5984578 | 9.413543 | 7.398558 | 0.0076905 | 0.4607281 | ENSG00000133110 | POSTN | periostin | 13 | 37562583 | 37598844 | protein_coding | HGNC:16953 | 7.8230384 | 6.5364456 | 5.6339844 | 5.5089182 | 7.4256274 | 8.3714977 | 9.4726499 | 5.2459880 | 6.6630805 | 6.1219520 | 8.6601025 | 6.6951169 |
| ENSG00000074582 | -1.5415973 | -0.1860704 | 4.389194 | 7.379104 | 0.0077362 | 0.4607281 | ENSG00000074582 | BCS1L | BCS1 homolog, ubiquinol-cytochrome c reductase complex chaperone | 2 | 218658764 | 218663443 | protein_coding | HGNC:1020 | 4.6675779 | 5.1105113 | 5.2770522 | 4.8382321 | 3.7715193 | 2.9819626 | 3.3806810 | 5.0375593 | 4.4316407 | 4.7661790 | 3.4138093 | 4.9925722 |
| ENSG00000138161 | 1.4380528 | 3.3449402 | 4.384803 | 7.295108 | 0.0077375 | 0.4607281 | ENSG00000138161 | CUZD1 | CUB and zona pellucida like domains 1 | 10 | 122832158 | 122846175 | protein_coding | HGNC:17937 | -0.7351129 | 2.8714599 | -13.2877124 | 0.6920379 | 2.6755457 | 3.4988965 | 1.7101714 | 5.4971895 | 2.6537628 | 4.6853746 | 2.8050074 | 1.2531555 |
| ENSG00000168487 | 1.0461928 | 0.0670331 | 5.947279 | 7.388319 | 0.0077422 | 0.4607281 | ENSG00000168487 | BMP1 | bone morphogenetic protein 1 | 8 | 22165140 | 22212326 | protein_coding | HGNC:1067 | 4.5594090 | 3.8090030 | 3.5348738 | 4.8034665 | 4.9393388 | 5.3931443 | 5.6298691 | 4.4673102 | 3.8271249 | 4.1824396 | 5.3484219 | 4.2688423 |
| ENSG00000169371 | -0.0468275 | -2.8586328 | 3.950473 | 7.234619 | 0.0077564 | 0.4607281 | ENSG00000169371 | SNUPN | snurportin 1 | 15 | 75598083 | 75626469 | protein_coding | HGNC:14245 | 3.0292313 | 3.9906576 | 4.2639145 | 4.8085855 | 2.6273325 | 3.6470525 | 4.4992784 | 1.2291480 | -0.6019671 | 0.5864717 | 3.7838987 | 4.1557509 |
| ENSG00000158714 | -1.6803791 | 0.1863237 | 4.675701 | 7.374243 | 0.0077656 | 0.4607281 | ENSG00000158714 | SLAMF8 | SLAM family member 8 | 1 | 159826811 | 159837492 | protein_coding | HGNC:21391 | 3.3170901 | 2.8609884 | 3.3463845 | 2.6725417 | 2.1709422 | 0.1705955 | 0.9402675 | 2.6773161 | 3.6225254 | 3.2259836 | 1.3310516 | 3.0780175 |
| ENSG00000131503 | -0.3376403 | -1.4449974 | 6.009199 | 7.367405 | 0.0078158 | 0.4611346 | ENSG00000131503 | ANKHD1 | ankyrin repeat and KH domain containing 1 | 5 | 140401814 | 140539856 | protein_coding | HGNC:24714 | 3.3705513 | 4.9107575 | 4.8463350 | 4.7639325 | 5.0418094 | 4.5613225 | 5.1129906 | 4.6184520 | 3.1660571 | 4.0677910 | 4.9253325 | 4.5903619 |
| ENSG00000176907 | -0.9868036 | -3.7482177 | 3.655600 | 6.973074 | 0.0078631 | 0.4613609 | ENSG00000176907 | TCIM | transcriptional and immune response regulator | 8 | 40153482 | 40155310 | protein_coding | HGNC:1357 | 4.0004657 | 1.9802820 | 2.9667741 | 2.7442145 | 2.9070647 | 2.3484642 | -0.5172013 | -0.7129273 | -0.9541237 | -0.8284908 | 2.1475724 | 3.1072267 |
| ENSG00000147889 | -1.1759627 | -1.1966719 | 5.328688 | 7.340201 | 0.0079508 | 0.4639420 | ENSG00000147889 | CDKN2A | cyclin dependent kinase inhibitor 2A | 9 | 21967752 | 21995301 | protein_coding | HGNC:1787 | 4.9838344 | 5.7761367 | 6.5278007 | 6.4808989 | 5.1353811 | 4.3559766 | 4.7461473 | 4.6478971 | 4.9722561 | 4.8191731 | 4.7807090 | 6.0662754 |
| ENSG00000136237 | -2.7502697 | -1.4540787 | 3.105058 | 6.659173 | 0.0080462 | 0.4645911 | ENSG00000136237 | RAPGEF5 | Rap guanine nucleotide exchange factor 5 | 7 | 22118236 | 22357154 | protein_coding | HGNC:16862 | -0.3704895 | 0.6529582 | 1.1715681 | 3.9746726 | -2.3021266 | -1.7146712 | -2.2713219 | 1.6861809 | -1.6850924 | 0.8192676 | -2.0698031 | 2.3448311 |
| ENSG00000135083 | -1.3194078 | -1.6942553 | 4.182458 | 7.303998 | 0.0080706 | 0.4645911 | ENSG00000135083 | CCNJL | cyclin J like | 5 | 160249083 | 160345396 | protein_coding | HGNC:25876 | 2.1734722 | 2.2564213 | 3.5988506 | 3.6435064 | 0.9069252 | 3.3120844 | 1.8387784 | 0.5089661 | 0.9294638 | 0.7344812 | 2.3584072 | 3.0833058 |
| ENSG00000147642 | -1.4034123 | -1.2169558 | 5.037347 | 7.303391 | 0.0081077 | 0.4645911 | ENSG00000147642 | SYBU | syntabulin | 8 | 109573978 | 109691791 | protein_coding | HGNC:26011 | 3.6059181 | 5.8371862 | 4.7360218 | 4.8131748 | 4.4581379 | 3.0816781 | 3.7817163 | 4.5085319 | 1.8851097 | 3.7254925 | 3.8810009 | 4.9554518 |
| ENSG00000137332 | -7.0071996 | -7.0071996 | 3.505534 | 8.422030 | 0.0081369 | 0.4645911 | ENSG00000137332 | DDR1 | discoidin domain receptor tyrosine kinase 1 | HSCHR6_MHC_COX_CTG1 | 2360744 | 2379927 | protein_coding | HGNC:2730 | 2.7049408 | -13.2877124 | 1.6709590 | 4.3447735 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 2.9080395 |
| ENSG00000090539 | 1.1611039 | 1.1048124 | 5.472657 | 7.251410 | 0.0082719 | 0.4697718 | ENSG00000090539 | CHRD | chordin | 3 | 184380054 | 184390736 | protein_coding | HGNC:1949 | 4.0623576 | 2.5779861 | 2.4792099 | 3.7131615 | 4.4094721 | 4.5316202 | 3.1782769 | 4.9838789 | 3.9601096 | 4.5609619 | 4.1546772 | 3.3704726 |
| ENSG00000106571 | 1.3449568 | 0.8250032 | 5.578501 | 7.234091 | 0.0083316 | 0.4706446 | ENSG00000106571 | GLI3 | GLI family zinc finger 3 | 7 | 41960949 | 42264100 | protein_coding | HGNC:4319 | 4.7019417 | 1.6179788 | 3.3295662 | 3.4140689 | 5.0638246 | 3.2511649 | 4.1948315 | 4.2896336 | 1.8408556 | 3.5322858 | 4.3524351 | 3.6383380 |
| ENSG00000026025 | 0.9023242 | 0.0016878 | 9.888308 | 7.195352 | 0.0084421 | 0.4706926 | ENSG00000026025 | VIM | vimentin | 10 | 17228241 | 17237593 | protein_coding | HGNC:12692 | 8.9061182 | 8.4267666 | 8.3651662 | 8.9399801 | 9.7781856 | 9.4890732 | 10.1158313 | 9.0675107 | 8.5636846 | 8.8374803 | 9.8171359 | 8.6836393 |
| ENSG00000151458 | -0.2326727 | -1.5773379 | 5.226380 | 7.181575 | 0.0085500 | 0.4706926 | ENSG00000151458 | ANKRD50 | ankyrin repeat domain containing 50 | 4 | 124664048 | 124712732 | protein_coding | HGNC:29223 | 2.5453877 | 2.5656474 | 2.4859476 | 3.0405844 | 2.9722008 | 2.0448298 | 2.4273678 | 1.8748300 | 0.5490284 | 1.3591512 | 2.5321242 | 2.6774022 |
| ENSG00000120742 | 0.9093296 | 0.4544342 | 6.020022 | 7.157124 | 0.0086081 | 0.4706926 | ENSG00000120742 | SERP1 | stress associated endoplasmic reticulum protein 1 | 3 | 150541998 | 150603228 | protein_coding | HGNC:10759 | 5.1712854 | 4.9572274 | 5.3528441 | 5.9242948 | 5.8997445 | 5.1266688 | 6.2561618 | 5.7532842 | 4.9319256 | 5.4002845 | 5.8335242 | 5.3982631 |
| ENSG00000162493 | 2.0382658 | 1.1194339 | 4.112959 | 7.109871 | 0.0087467 | 0.4706926 | ENSG00000162493 | PDPN | podoplanin | 1 | 13583465 | 13617957 | protein_coding | HGNC:29602 | 1.1008546 | 2.8897786 | -1.1820199 | 1.8902362 | 3.7119177 | 3.7610110 | 2.5530434 | 3.3594087 | 3.6065138 | 3.4882453 | 3.4387352 | 1.7765332 |
| ENSG00000103855 | 0.4358296 | -0.5843700 | 7.520227 | 7.108205 | 0.0087918 | 0.4706926 | ENSG00000103855 | CD276 | CD276 molecule | 15 | 73683966 | 73714514 | protein_coding | HGNC:19137 | 6.0766837 | 5.4810146 | 6.0826436 | 6.0468441 | 6.8024397 | 5.8994884 | 6.0287143 | 5.2829896 | 5.0402779 | 5.1667319 | 6.3013350 | 5.9427634 |
| ENSG00000151388 | 0.0456942 | -1.1929594 | 6.388562 | 7.105734 | 0.0088090 | 0.4706926 | ENSG00000151388 | ADAMTS12 | ADAM metallopeptidase with thrombospondin type 1 motif 12 | 5 | 33523535 | 33892019 | protein_coding | HGNC:14605 | 3.6793375 | 3.3284826 | 3.0281434 | 3.7323439 | 3.7057861 | 3.2928063 | 4.0047113 | 2.7169891 | 1.7749877 | 2.3215449 | 3.6967642 | 3.4693992 |
| ENSG00000249663 | 0.5466009 | -7.3550918 | 4.675219 | 7.384077 | 0.0088551 | 0.4706926 | ENSG00000249663 | HSCHR6_MHC_MCF_CTG1 | 985707 | 986697 | unprocessed_pseudogene | -13.2877124 | 5.3575830 | 6.0996609 | 3.8688770 | 6.0667744 | 5.3582563 | 4.7148631 | -13.2877124 | -13.2877124 | -13.2877124 | 5.4844936 | 4.9563852 | |||
| ENSG00000166598 | 0.7598286 | 0.1118668 | 7.949517 | 7.080596 | 0.0089051 | 0.4706926 | ENSG00000166598 | HSP90B1 | heat shock protein 90 beta family member 1 | 12 | 103930107 | 103953931 | protein_coding | HGNC:12028 | 6.9641059 | 6.4592486 | 6.9440919 | 6.6362539 | 7.2413154 | 7.0498136 | 7.6040456 | 6.7765482 | 6.4824132 | 6.6369637 | 7.3169853 | 6.7663715 |
| ENSG00000116985 | -1.2880269 | -0.2417715 | 4.819554 | 7.096775 | 0.0089153 | 0.4706926 | ENSG00000116985 | BMP8B | bone morphogenetic protein 8b | 1 | 39757182 | 39788865 | protein_coding | HGNC:1075 | 2.5306394 | 2.4989935 | 2.8176095 | 2.6457501 | 1.8995376 | 0.8086437 | 0.9306594 | 2.3298567 | 2.3735522 | 2.3518700 | 1.3003475 | 2.6287344 |
| ENSG00000143155 | 1.8472356 | 1.7097194 | 3.934064 | 7.014867 | 0.0089664 | 0.4706926 | ENSG00000143155 | TIPRL | TOR signaling pathway regulator | 1 | 168178962 | 168202109 | protein_coding | HGNC:30231 | 2.7661885 | 2.2722750 | 0.2929690 | 1.4865347 | 2.5548351 | 3.0395099 | 2.1398440 | 3.0146925 | 1.5795331 | 2.4686641 | 2.6249012 | 1.9691262 |
| ENSG00000075426 | 1.0529477 | 0.0148684 | 7.155648 | 7.065051 | 0.0089720 | 0.4706926 | ENSG00000075426 | FOSL2 | FOS like 2, AP-1 transcription factor subunit | 2 | 28392448 | 28417317 | protein_coding | HGNC:3798 | 5.1009508 | 3.5078612 | 4.0657859 | 4.5574552 | 4.5353933 | 4.7231433 | 6.0802513 | 4.2865470 | 3.7200776 | 4.0309381 | 5.2886384 | 4.4260654 |
| ENSG00000119878 | -2.1730145 | 0.1565773 | 3.855421 | 6.797208 | 0.0090350 | 0.4706926 | ENSG00000119878 | CRIPT | CXXC repeat containing interactor of PDZ3 domain | 2 | 46616416 | 46685037 | protein_coding | HGNC:14312 | 3.5953881 | 2.8993479 | 2.4415045 | 3.3037087 | 1.8492527 | -0.0622247 | -0.3898197 | 3.6607738 | 2.8241053 | 3.3022598 | 0.8275874 | 3.1232734 |
| ENSG00000144642 | 1.3159493 | -0.2775925 | 4.688379 | 7.045265 | 0.0091751 | 0.4706926 | ENSG00000144642 | RBMS3 | RNA binding motif single stranded interacting protein 3 | 3 | 28574791 | 30010391 | protein_coding | HGNC:13427 | 2.3293363 | 2.7669841 | 1.9639623 | 1.2969806 | 2.7961731 | 4.2520937 | 4.7553581 | 2.2894940 | 2.1187703 | 2.2066560 | 4.1432222 | 2.1851558 |
| ENSG00000147459 | 0.1805943 | 1.2508730 | 5.127729 | 7.028931 | 0.0092006 | 0.4706926 | ENSG00000147459 | DOCK5 | dedicator of cytokinesis 5 | 8 | 25184689 | 25418082 | protein_coding | HGNC:23476 | 3.9591777 | 0.6268092 | 1.7418639 | 3.0008996 | 0.6689333 | 1.6734045 | 1.0399336 | 3.0214938 | 3.5092693 | 3.2858987 | 1.1881255 | 2.8302257 |
| ENSG00000116984 | -0.8730139 | 0.3271773 | 5.478945 | 7.011452 | 0.0092470 | 0.4706926 | ENSG00000116984 | MTR | 5-methyltetrahydrofolate-homocysteine methyltransferase | 1 | 236795260 | 236921278 | protein_coding | HGNC:7468 | 2.8637732 | 2.4105362 | 2.6116136 | 3.1328415 | 2.9521705 | 2.6728763 | 2.6773795 | 3.6170133 | 2.6090514 | 3.1993267 | 2.7735073 | 2.7802767 |
| ENSG00000056736 | -0.7440752 | -0.5695072 | 7.426486 | 6.998138 | 0.0092566 | 0.4706926 | ENSG00000056736 | IL17RB | interleukin 17 receptor B | 3 | 53846568 | 53865794 | protein_coding | HGNC:18015 | 6.5645315 | 6.4767359 | 6.7742142 | 6.8704097 | 6.3439574 | 5.5271593 | 5.6598235 | 6.2249791 | 5.9347811 | 6.0871645 | 5.8899784 | 6.6800856 |
| ENSG00000017483 | 2.2271861 | 3.3080199 | 4.008996 | 6.712645 | 0.0092772 | 0.4706926 | ENSG00000017483 | SLC38A5 | solute carrier family 38 member 5 | X | 48458537 | 48470260 | protein_coding | HGNC:18070 | -0.7622625 | 3.6100651 | -13.2877124 | -13.2877124 | 4.5737177 | 4.0224334 | 4.5837792 | 4.3200475 | 5.4152385 | 4.9691633 | 4.4160454 | 1.6781165 |
| ENSG00000052795 | -1.8212050 | -0.6937070 | 4.702251 | 6.995576 | 0.0092875 | 0.4706926 | ENSG00000052795 | FNIP2 | folliculin interacting protein 2 | 4 | 158769026 | 158908050 | protein_coding | HGNC:29280 | 2.1657473 | 2.6303691 | 2.3388129 | 2.5249117 | 1.7980202 | 0.4980221 | 1.8436109 | -0.0216696 | 4.1548918 | 3.2325458 | 1.4988932 | 2.4258001 |
| ENSG00000227761 | 0.2184729 | -3.5151641 | 5.722842 | 6.972514 | 0.0093121 | 0.4706926 | ENSG00000227761 | BAG6 | BAG cochaperone 6 | HSCHR6_MHC_DBB_CTG1 | 2886791 | 2900476 | protein_coding | HGNC:13919 | 5.8044424 | 6.1845245 | 5.4897944 | 5.3277685 | 5.3935787 | 6.4363635 | 4.9435251 | 4.1876889 | -13.2877124 | 3.1876968 | 5.7316574 | 5.7395610 |
| ENSG00000275650 | -3.3332857 | -0.3263661 | 3.974480 | 6.465136 | 0.0093907 | 0.4706926 | ENSG00000275650 | TTYH1 | tweety family member 1 | HSCHR19_4_CTG3_1 | 397719 | 419194 | protein_coding | HGNC:13476 | 2.8317437 | 2.1833833 | 3.0847161 | 2.2516231 | 0.7659717 | -1.1750546 | -1.7212444 | 3.1413672 | -0.3844594 | 2.2614804 | -0.2941436 | 2.6385101 |
| ENSG00000024422 | 1.0382419 | 0.0635523 | 7.302118 | 6.939428 | 0.0095163 | 0.4706926 | ENSG00000024422 | EHD2 | EH domain containing 2 | 19 | 47713422 | 47743134 | protein_coding | HGNC:3243 | 5.2889501 | 4.5809507 | 4.4806611 | 5.9699061 | 6.2466679 | 5.7292548 | 6.3936360 | 5.3920180 | 4.2957806 | 4.9456091 | 6.1501502 | 5.2097879 |
| ENSG00000146966 | 1.0263557 | -0.5396581 | 4.587767 | 6.961473 | 0.0095448 | 0.4706926 | ENSG00000146966 | DENND2A | DENN domain containing 2A | 7 | 140518420 | 140673993 | protein_coding | HGNC:22212 | 1.6704950 | 1.8376954 | 2.3802568 | 3.4304449 | 4.0380280 | 5.1624376 | 2.6800497 | 1.6437832 | 1.4964506 | 1.5719966 | 4.2890912 | 2.5074846 |
| ENSG00000271425 | -2.6602871 | -0.6240434 | 3.789386 | 6.586241 | 0.0095533 | 0.4706926 | ENSG00000271425 | NBPF10 | NBPF member 10 | 1 | 146064711 | 146229000 | protein_coding | HGNC:31992 | -0.4440739 | -0.1699118 | 1.6976377 | 0.9333687 | -1.8446704 | -1.8112598 | -13.2877124 | -0.0890187 | 0.2561882 | 0.0938853 | -2.4125751 | 0.7607270 |
| ENSG00000179242 | -2.3777262 | -6.6559434 | 3.363578 | 6.801682 | 0.0095944 | 0.4706926 | ENSG00000179242 | CDH4 | cadherin 4 | 20 | 61252261 | 61940617 | protein_coding | HGNC:1763 | 1.1451453 | 1.8824975 | 1.8562698 | -1.0063822 | -13.2877124 | -13.2877124 | 0.0193461 | -13.2877124 | -13.2877124 | -13.2877124 | -1.5653317 | 1.3244230 |
| ENSG00000235220 | -1.7239301 | 1.7915850 | 4.814778 | 6.850353 | 0.0096156 | 0.4706926 | ENSG00000235220 | HLA-F | major histocompatibility complex, class I, F | HSCHR6_MHC_DBB_CTG1 | 985849 | 1001601 | protein_coding | HGNC:4963 | -13.2877124 | 4.9119960 | 6.0710233 | 6.1341781 | 1.9829144 | -13.2877124 | 5.0229846 | 6.7775854 | 5.8960912 | 6.4031411 | 3.6035539 | 5.3886538 |
| ENSG00000197956 | 0.0596150 | 0.8572351 | 8.045740 | 6.915764 | 0.0096217 | 0.4706926 | ENSG00000197956 | S100A6 | S100 calcium binding protein A6 | 1 | 153534599 | 153536244 | protein_coding | HGNC:10496 | 10.0371185 | 9.6813386 | 10.5951212 | 10.2418955 | 10.6368189 | 9.9193737 | 10.1232480 | 10.7905992 | 10.9995444 | 10.8988508 | 10.2589124 | 10.1766483 |
| ENSG00000105825 | 0.3592981 | -2.3058548 | 7.136469 | 6.908296 | 0.0096630 | 0.4706926 | ENSG00000105825 | TFPI2 | tissue factor pathway inhibitor 2 | 7 | 93885396 | 93890753 | protein_coding | HGNC:11761 | 7.6945941 | 4.9450031 | 6.0393700 | 7.7100904 | 7.9774567 | 7.1017150 | 7.8923504 | 5.2216552 | 4.1512550 | 4.7835305 | 7.7073001 | 7.0031766 |
| ENSG00000160908 | -0.7254339 | 0.0400841 | 7.074022 | 6.901715 | 0.0096889 | 0.4706926 | ENSG00000160908 | ZNF394 | zinc finger protein 394 | 7 | 99473877 | 99504857 | protein_coding | HGNC:18832 | 4.7619494 | 4.5852866 | 4.8396938 | 4.7339294 | 4.1872966 | 3.7062662 | 4.1187969 | 4.6915889 | 4.6717635 | 4.6817101 | 4.0192251 | 4.7331265 |
| ENSG00000214021 | -1.0337385 | -0.4483342 | 5.539968 | 6.909777 | 0.0096917 | 0.4706926 | ENSG00000214021 | TTLL3 | tubulin tyrosine ligase like 3 | 3 | 9808086 | 9855138 | protein_coding | HGNC:24483 | 5.1573670 | 5.0278049 | 4.1556639 | 4.6762006 | 3.6479730 | 3.9440659 | 3.3861361 | 4.6131667 | 4.5075654 | 4.5613322 | 3.6774090 | 4.8034916 |
| ENSG00000167779 | 1.9950705 | -0.0139422 | 3.449192 | 6.745263 | 0.0097139 | 0.4706926 | ENSG00000167779 | IGFBP6 | insulin like growth factor binding protein 6 | 12 | 53097436 | 53102345 | protein_coding | HGNC:5475 | 1.7485600 | 2.6546296 | 3.5589073 | 0.1145643 | 3.7393194 | 4.3908570 | 4.5339119 | 1.6968529 | 2.6058176 | 2.2217679 | 4.2605139 | 2.4934519 |
| ENSG00000284218 | 2.5210263 | -4.7575956 | 3.556149 | 6.967859 | 0.0097262 | 0.4706926 | ENSG00000284218 | NPIPB5 | nuclear pore complex interacting protein family member B5 | HG926_PATCH | 568655 | 591235 | protein_coding | HGNC:37233 | 2.1957287 | -13.2877124 | -13.2877124 | -13.2877124 | 2.8014143 | 3.0860733 | 2.4760319 | -13.2877124 | -13.2877124 | -13.2877124 | 2.8091882 | 0.1958225 |
| ENSG00000155980 | -0.7880497 | -1.6434028 | 6.233959 | 6.888956 | 0.0097586 | 0.4706926 | ENSG00000155980 | KIF5A | kinesin family member 5A | 12 | 57546026 | 57586633 | protein_coding | HGNC:6323 | 3.7057047 | 3.7293829 | 3.6376437 | 4.6625047 | 2.8488290 | 3.0355639 | 4.2013836 | 1.3761609 | 2.8259645 | 2.2759972 | 3.4940154 | 4.0018587 |
| ENSG00000156113 | -1.7039467 | -1.1443363 | 4.492796 | 6.884046 | 0.0097950 | 0.4706926 | ENSG00000156113 | KCNMA1 | potassium calcium-activated channel subfamily M alpha 1 | 10 | 76869601 | 77638369 | protein_coding | HGNC:6284 | 3.9195372 | 4.1766118 | 3.6372863 | 2.2538628 | 0.1859021 | 2.5038250 | 0.9544740 | 2.7459356 | 1.6077469 | 2.2862898 | 1.5438710 | 3.6561667 |
| ENSG00000230224 | -1.3101467 | 0.9912735 | 3.936546 | 6.758667 | 0.0098767 | 0.4724805 | ENSG00000230224 | PHB1P9 | 10 | 100248271 | 100249095 | processed_pseudogene | HGNC:39288 | 4.0453682 | 4.7611001 | 4.2584218 | 3.8609147 | 1.0299694 | 3.1691105 | 3.6617931 | 5.2431337 | 5.2187053 | 5.2309712 | 2.9814437 | 4.2723198 |
outPath = "output/day22/DEG"
Test = "day22.SCN2A.vs.WT"
qlf = glmQLFTest(fit, coef=2)
sig.gene.summary(qlf)
## q0.005 q0.01 q0.05 q0.2 p0.01
## Down 0 0 0 0 80
## NotSig 10620 10620 10620 10620 10420
## Up 0 0 0 0 120
deg = attach_annotations_by_p(qlf, 0.01)
maxAveTPM = data.frame(maxAveTPM = apply(deg[,c("SCN2A", "WT")], 1, max))
deg = cbind(deg, maxAveTPM)
# deg %>%
# kbl() %>%
# kable_styling(bootstrap_options = c("striped", "hover", "condensed")) %>%
# scroll_box(width = "100%", height = "300px")
write.table(deg, file=paste(outPath,ExperimentName,Test,"txt", sep="."), quote=FALSE, row.names=TRUE, col.names=TRUE, sep="\t")
#MvsA plot
ggplot(data = as.data.frame(topTags(qlf, n=NULL)) %>% arrange(desc(PValue)), aes(x=logCPM, y=logFC)) +
geom_point(aes(color=PValue<0.01)) +
scale_color_manual(values = xgfs_normal12[c(13,2)]) +
theme_minimal()
#Volcano plot
ggplot(data = as.data.frame(topTags(qlf, n=NULL)) %>% arrange(desc(PValue)), aes(x=logFC, y=-log10(PValue))) +
geom_point(aes(color=PValue<0.01)) +
scale_color_manual(values = xgfs_normal12[c(13,2)]) +
theme_minimal()
SCN2AUp = row.names(deg[deg[,"logFC"] > 0 & deg[,"maxAveTPM"] > log2(0.1),])
SCN2ADown = row.names(deg[deg[,"logFC"] < 0 & deg[,"maxAveTPM"] > log2(0.1),])
Test = "day22.CHD2.vs.WT"
qlf = glmQLFTest(fit, coef=3)
sig.gene.summary(qlf)
## q0.005 q0.01 q0.05 q0.2 p0.01
## Down 0 0 0 11 119
## NotSig 10620 10620 10620 10600 10438
## Up 0 0 0 9 63
deg = attach_annotations_by_p(qlf, 0.01)
maxAveTPM = data.frame(maxAveTPM = apply(deg[,c("CHD2", "WT")], 1, max))
deg = cbind(deg, maxAveTPM)
# deg %>%
# kbl() %>%
# kable_styling(bootstrap_options = c("striped", "hover", "condensed")) %>%
# scroll_box(width = "100%", height = "300px")
write.table(deg, file=paste(outPath,ExperimentName,Test,"txt", sep="."), quote=FALSE, row.names=TRUE, col.names=TRUE, sep="\t")
#MvsA plot
ggplot(data = as.data.frame(topTags(qlf, n=NULL)) %>% arrange(desc(PValue)), aes(x=logCPM, y=logFC)) +
geom_point(aes(color=PValue<0.01)) +
scale_color_manual(values = xgfs_normal12[c(13,2)]) +
theme_minimal()
#Volcano plot
ggplot(data = as.data.frame(topTags(qlf, n=NULL)) %>% arrange(desc(PValue)), aes(x=logFC, y=-log10(PValue))) +
geom_point(aes(color=PValue<0.01)) +
scale_color_manual(values = xgfs_normal12[c(13,2)]) +
theme_minimal()
CHD2Up = row.names(deg[deg[,"logFC"] > 0 & deg[,"maxAveTPM"] > log2(0.1),])
CHD2Down = row.names(deg[deg[,"logFC"] < 0 & deg[,"maxAveTPM"] > log2(0.1),])
Test = "day22"
venn.diagram(list(CHD2 = CHD2Up, SCN2A = SCN2AUp), filename = paste(outPath,ExperimentName,Test,"up.png", sep="."), imagetype = "png", main = paste(Test, "up regulated", sep = " "), col = xgfs_normal12[1:2])
## [1] 1
venn.diagram(list(CHD2 = CHD2Down, SCN2A = SCN2ADown), filename = paste(outPath,ExperimentName,Test,"down.png", sep="."), imagetype = "png", main = paste(Test, "down regulated", sep = " "), col = xgfs_normal12[1:2])
## [1] 1
SCN2AUp.d22 = SCN2AUp
SCN2ADown.d22 = SCN2ADown
CHD2Up.d22 = CHD2Up
CHD2Down.d22 = CHD2Down
Note:
Test the differences between WT, SCN2A and CHD2 at 28 days of transdifferentiation.
fit = test_a_diff_state(diffState = "day_28", countTable = counts.current)
qlf = glmQLFTest(fit, coef=2:3)
sig.gene.summary(qlf)
## q0.005 q0.01 q0.05 q0.2 p0.01
## NotSig 12565 12564 12562 12465 12194
## Sig 0 1 3 100 371
d28.genes.expressed = rownames(qlf$table)
attach_annotations_by_p(qlf, 0.01) %>%
kbl() %>%
kable_styling(bootstrap_options = c("striped", "hover", "condensed")) %>%
scroll_box(width = "100%", height = "300px")
| logFC.fSCN2A | logFC.fCHD2 | logCPM | F | PValue | FDR | ensembl_gene_id | hgnc_symbol | entrezgene_description | chromosome_name | start_position | end_position | gene_biotype | hgnc_id | CON_2_d28 | CON_3_d28 | SCN2A_1_d28 | SCN2A_2_d28 | SCN2A_3_d28 | CHD2_1_d28 | CHD2 | SCN2A | WT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000254875 | -7.0121747 | 4.5922599 | 6.182148 | 183.160652 | 0.0000006 | 0.0071402 | ENSG00000254875 | HSCHR6_MHC_QBL_CTG1 | 3377039 | 3395179 | protein_coding | -13.2877124 | 2.9947996 | -13.2877124 | -13.2877124 | -13.2877124 | 6.5582973 | 6.5582973 | -13.2877124 | 1.9948179 | |||
| ENSG00000125618 | 4.8072272 | 4.6335146 | 6.589851 | 52.019731 | 0.0000085 | 0.0459550 | ENSG00000125618 | PAX8 | paired box 8 | 2 | 113215997 | 113278921 | protein_coding | HGNC:8622 | 0.1328690 | 1.7446167 | 6.0542638 | 6.4813315 | 6.6035017 | 6.1229497 | 6.1229497 | 6.3982630 | 1.1530043 |
| ENSG00000138161 | -0.9064724 | 3.0801458 | 5.309977 | 49.680788 | 0.0000110 | 0.0459550 | ENSG00000138161 | CUZD1 | CUB and zona pellucida like domains 1 | 10 | 122832158 | 122846175 | protein_coding | HGNC:17937 | 3.3457298 | 3.7919178 | 1.7969690 | 2.9436127 | 2.6307857 | 6.4545832 | 6.4545832 | 2.5328887 | 3.5860047 |
| ENSG00000111452 | 6.4916953 | 3.7957978 | 4.779534 | 34.512319 | 0.0000262 | 0.0823220 | ENSG00000111452 | ADGRD1 | adhesion G protein-coupled receptor D1 | 12 | 130953907 | 131141469 | protein_coding | HGNC:19893 | 0.7884084 | -13.2877124 | 5.7878978 | 2.6261840 | 5.6870835 | 0.4612079 | 0.4612079 | 5.2345082 | -0.2115081 |
| ENSG00000228299 | 11.5437795 | 11.4795632 | 7.962628 | 44.496164 | 0.0000358 | 0.0857995 | ENSG00000228299 | HLA-C | major histocompatibility complex, class I, C | HSCHR6_MHC_DBB_CTG1 | 2526549 | 2529920 | protein_coding | HGNC:4933 | -13.2877124 | -13.2877124 | 7.6348425 | 8.2729494 | 9.0187454 | 8.8306809 | 8.8306809 | 8.4189333 | -13.2877124 |
| ENSG00000145423 | 4.7692961 | 1.1610501 | 7.051131 | 35.179087 | 0.0000461 | 0.0857995 | ENSG00000145423 | SFRP2 | secreted frizzled related protein 2 | 4 | 153780591 | 153789083 | protein_coding | HGNC:10777 | 2.8773589 | 0.8702653 | 6.7661901 | 6.5944726 | 7.7625395 | 3.4768823 | 3.4768823 | 7.1382993 | 2.1978711 |
| ENSG00000079689 | -3.4914999 | -2.5150197 | 5.723437 | 34.923849 | 0.0000478 | 0.0857995 | ENSG00000079689 | SCGN | secretagogin, EF-hand calcium binding protein | 6 | 25652201 | 25701783 | protein_coding | HGNC:16941 | 6.7792409 | 6.1970074 | 3.8023501 | 2.3278561 | 4.1795107 | 4.0820088 | 4.0820085 | 3.6280772 | 6.5172987 |
| ENSG00000197915 | 3.3699608 | 2.1141694 | 8.645960 | 32.864357 | 0.0000597 | 0.0938171 | ENSG00000197915 | HRNR | hornerin | 1 | 152212076 | 152224193 | protein_coding | HGNC:20846 | 2.2521068 | 2.9636541 | 5.5176265 | 5.8548600 | 6.6588550 | 4.7988627 | 4.7988627 | 6.0926223 | 2.6513105 |
| ENSG00000169429 | 0.6602023 | -3.8122724 | 7.300495 | 30.531994 | 0.0000805 | 0.1024432 | ENSG00000169429 | CXCL8 | C-X-C motif chemokine ligand 8 | 4 | 73740519 | 73743716 | protein_coding | HGNC:6025 | 6.7515008 | 6.1921794 | 7.1615457 | 7.4836679 | 7.4201490 | 4.0877764 | 4.0877768 | 7.3617102 | 6.4987776 |
| ENSG00000131016 | 1.7062621 | -1.6240596 | 6.241831 | 30.456414 | 0.0000815 | 0.1024432 | ENSG00000131016 | AKAP12 | A-kinase anchoring protein 12 | 6 | 151239967 | 151358559 | protein_coding | HGNC:370 | 2.4868335 | 2.0798290 | 4.2061944 | 3.9712598 | 4.5322602 | 0.9033599 | 0.9033599 | 4.2550414 | 2.2976366 |
| ENSG00000013297 | 2.5040431 | -1.1361923 | 5.802945 | 29.571010 | 0.0000925 | 0.1057115 | ENSG00000013297 | CLDN11 | claudin 11 | 3 | 170418868 | 170454733 | protein_coding | HGNC:8514 | 3.2364012 | 2.6385331 | 5.7834774 | 5.0491519 | 5.8808174 | 1.8976354 | 1.8976354 | 5.6158399 | 2.9682183 |
| ENSG00000277221 | 0.3011525 | 3.3632202 | 6.504289 | 27.697132 | 0.0001201 | 0.1179329 | ENSG00000277221 | LRRC37A2 | leucine rich repeat containing 37A | HSCHR17_2_CTG5 | 1030000 | 1075355 | protein_coding | HGNC:32404 | 3.1883125 | 1.9464734 | 3.1040707 | 3.5844660 | 2.5896520 | 6.2078065 | 6.2078065 | 3.1491413 | 2.6970792 |
| ENSG00000182752 | 2.2850058 | -0.0288724 | 7.671587 | 27.535523 | 0.0001220 | 0.1179329 | ENSG00000182752 | PAPPA | pappalysin 1 | 9 | 116153791 | 116402321 | protein_coding | HGNC:8602 | 3.9613796 | 2.4588654 | 5.0680160 | 5.0802626 | 5.6722293 | 2.5658087 | 2.5658087 | 5.3021798 | 3.3974751 |
| ENSG00000268173 | 0.0000000 | 9.1790021 | 3.810609 | 49.684145 | 0.0001353 | 0.1184441 | ENSG00000268173 | 19 | 18153158 | 18178117 | protein_coding | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 3.8130189 | 3.8130187 | -13.2877124 | -13.2877124 | |||
| ENSG00000276458 | 7.0462564 | 8.4038359 | 4.090972 | 31.089479 | 0.0001414 | 0.1184441 | ENSG00000276458 | LENG8 | leukocyte receptor cluster member 8 | HSCHR19LRC_COX1_CTG3_1 | 355231 | 368530 | protein_coding | HGNC:15500 | -13.2877124 | -13.2877124 | 1.9837714 | 2.0199634 | 2.1902953 | 3.3069647 | 3.3069647 | 2.0675217 | -13.2877124 |
| ENSG00000105647 | -0.1787816 | -8.8832093 | 5.591344 | 24.539231 | 0.0001930 | 0.1206367 | ENSG00000105647 | PIK3R2 | phosphoinositide-3-kinase regulatory subunit 2 | 19 | 18153163 | 18170540 | protein_coding | HGNC:8980 | 3.5666737 | 4.2211849 | 3.6836972 | 3.3098511 | 4.4880511 | -13.2877124 | -13.2877124 | 3.9135252 | 3.9307317 |
| ENSG00000106483 | 5.8656951 | 3.8697308 | 5.524786 | 21.135610 | 0.0002003 | 0.1206367 | ENSG00000106483 | SFRP4 | secreted frizzled related protein 4 | 7 | 37905932 | 38025695 | protein_coding | HGNC:10778 | -0.2173398 | -13.2877124 | 4.2865125 | 4.3716741 | 5.7044386 | 2.8836343 | 2.8836343 | 4.9442494 | -1.2171721 |
| ENSG00000227715 | -10.7421649 | -13.5654075 | 9.002246 | 18.278671 | 0.0002109 | 0.1206367 | ENSG00000227715 | HLA-A | major histocompatibility complex, class I, A | HSCHR6_MHC_MCF_CTG1 | 1286636 | 1289979 | protein_coding | HGNC:4931 | 0.1153289 | 11.2405592 | 0.6792643 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -0.9055180 | 10.2412050 |
| ENSG00000237988 | -3.3670828 | -7.8174545 | 3.734560 | 20.477564 | 0.0002122 | 0.1206367 | ENSG00000237988 | OR2I1P | olfactory receptor family 2 subfamily I member 1 pseudogene | 6 | 29550407 | 29557773 | protein_coding | HGNC:8258 | 2.5579298 | 2.4643452 | -2.1844770 | 0.1685933 | -1.5734712 | -13.2877124 | -13.2877124 | -0.8365417 | 2.5118962 |
| ENSG00000163347 | 4.3029826 | 2.5852993 | 4.433153 | 21.438239 | 0.0002248 | 0.1206367 | ENSG00000163347 | CLDN1 | claudin 1 | 3 | 190305707 | 190322446 | protein_coding | HGNC:2032 | -2.0925186 | -0.4282397 | 4.0492864 | 2.8491074 | 3.1531990 | 1.6666698 | 1.6666698 | 3.4443955 | -1.0326263 |
| ENSG00000166833 | -1.6282638 | -2.3839526 | 6.804129 | 23.529549 | 0.0002271 | 0.1206367 | ENSG00000166833 | NAV2 | neuron navigator 2 | 11 | 19350724 | 20121601 | protein_coding | HGNC:15997 | 3.5909468 | 4.4672501 | 2.7269199 | 3.8148196 | 4.3296342 | 1.7311298 | 1.7311298 | 3.7655399 | 4.0946342 |
| ENSG00000172156 | 3.4411629 | 1.2905074 | 8.029249 | 23.470661 | 0.0002291 | 0.1206367 | ENSG00000172156 | CCL11 | C-C motif chemokine ligand 11 | 17 | 34285742 | 34288334 | protein_coding | HGNC:10610 | 5.8218930 | 5.1823521 | 9.1563066 | 8.0250006 | 9.7096964 | 6.9182779 | 6.9182777 | 9.1193033 | 5.5372743 |
| ENSG00000116147 | -3.0957394 | -2.4548814 | 3.918697 | 21.176913 | 0.0002303 | 0.1206367 | ENSG00000116147 | TNR | tenascin R | 1 | 175315194 | 175743595 | protein_coding | HGNC:11953 | 3.1628089 | 1.6274107 | -2.1033701 | -0.6845033 | -0.7284620 | -1.3140796 | -1.3140796 | -1.0404960 | 2.5903981 |
| ENSG00000267954 | 0.0536594 | 2.2384151 | 5.595008 | 23.442089 | 0.0002329 | 0.1206367 | ENSG00000267954 | HSCHR22_1_CTG7 | 18645 | 20320 | protein_coding | 5.6632429 | 5.8761516 | 5.8843942 | 6.2668160 | 5.5872645 | 8.0752027 | 8.0752027 | 5.9397741 | 5.7736211 | |||
| ENSG00000148600 | -2.5348499 | -1.7710111 | 5.068123 | 23.033645 | 0.0002518 | 0.1206367 | ENSG00000148600 | CDHR1 | cadherin related family member 1 | 10 | 84194537 | 84219621 | protein_coding | HGNC:14550 | 2.9229386 | 4.4511508 | 1.3472223 | 1.8485987 | 1.9017111 | 1.4551349 | 1.4551349 | 1.7198817 | 3.8805866 |
| ENSG00000143333 | -2.2245681 | -1.4758977 | 5.523720 | 22.953770 | 0.0002549 | 0.1206367 | ENSG00000143333 | RGS16 | regulator of G protein signaling 16 | 1 | 182598623 | 182604389 | protein_coding | HGNC:9997 | 5.1235423 | 5.2739998 | 3.1913577 | 2.6000925 | 3.3865509 | 3.7762168 | 3.7762168 | 3.0962659 | 5.2007315 |
| ENSG00000167194 | -1.2002195 | -2.0670899 | 7.516941 | 22.611926 | 0.0002646 | 0.1206367 | ENSG00000167194 | C16orf92 | chromosome 16 open reading frame 92 | 16 | 30023198 | 30027736 | protein_coding | HGNC:26346 | 8.6684811 | 8.9463685 | 7.5929641 | 7.6744114 | 7.8941213 | 6.7989058 | 6.7989059 | 7.7261820 | 8.8141053 |
| ENSG00000235952 | -5.8775361 | -11.7031136 | 10.488666 | 22.289832 | 0.0002799 | 0.1206367 | ENSG00000235952 | HSCHR6_MHC_QBL_CTG1 | 1197034 | 1198026 | unprocessed_pseudogene | 7.9166977 | 13.4670368 | 7.0384190 | 6.7123820 | 5.8129833 | 0.5766479 | 0.5766479 | 6.6075167 | 12.4974991 | |||
| ENSG00000180616 | -1.7725384 | 0.2549073 | 6.347463 | 21.435911 | 0.0003272 | 0.1206367 | ENSG00000180616 | SSTR2 | somatostatin receptor 2 | 17 | 73165010 | 73176633 | protein_coding | HGNC:11331 | 3.5762648 | 4.0736775 | 2.5582490 | 2.1430107 | 1.5849154 | 4.1408043 | 4.1408043 | 2.1491133 | 3.8463031 |
| ENSG00000159307 | -2.6159727 | 1.4912410 | 4.278309 | 19.011090 | 0.0003309 | 0.1206367 | ENSG00000159307 | SCUBE1 | signal peptide, CUB domain and EGF like domain containing 1 | 22 | 43197280 | 43343372 | protein_coding | HGNC:13441 | 1.3198561 | 0.0996601 | 1.2209812 | -1.6778780 | -1.0986940 | 2.4291052 | 2.4291052 | 0.0521988 | 0.8350889 |
| ENSG00000230341 | 5.1015599 | 9.0032184 | 3.883798 | 22.349621 | 0.0003406 | 0.1206367 | ENSG00000230341 | PPP1R18 | protein phosphatase 1 regulatory subunit 18 | HSCHR6_MHC_APD_CTG1 | 2005896 | 2017402 | protein_coding | HGNC:29413 | -13.2877124 | -13.2877124 | -13.2877124 | 0.5545014 | 0.6261223 | 3.8210185 | 3.8210185 | 0.0058412 | -13.2877124 |
| ENSG00000170961 | 2.7993306 | 1.6887002 | 5.894506 | 21.188716 | 0.0003434 | 0.1206367 | ENSG00000170961 | HAS2 | hyaluronan synthase 2 | 8 | 121612116 | 121641440 | protein_coding | HGNC:4819 | 1.8321374 | 1.2487953 | 3.9707962 | 4.5258680 | 4.8856972 | 3.3436489 | 3.3436489 | 4.5084009 | 1.5697516 |
| ENSG00000069702 | 2.7142275 | 0.6896955 | 6.440938 | 21.123041 | 0.0003451 | 0.1206367 | ENSG00000069702 | TGFBR3 | transforming growth factor beta receptor 3 | 1 | 91680343 | 91906335 | protein_coding | HGNC:11774 | 2.0582846 | 1.1377311 | 4.6742223 | 5.7590314 | 5.1225048 | 4.2675498 | 4.2675498 | 5.2545318 | 1.6702181 |
| ENSG00000086062 | 2.1244917 | 1.3882162 | 7.183830 | 21.030299 | 0.0003497 | 0.1206367 | ENSG00000086062 | B4GALT1 | beta-1,4-galactosyltransferase 1 | 9 | 33100493 | 33167336 | protein_coding | HGNC:924 | 3.6428483 | 3.2630284 | 5.4445310 | 5.6386486 | 6.0056036 | 4.9308138 | 4.9308140 | 5.7153149 | 3.4654012 |
| ENSG00000134802 | 2.5391280 | -0.9483755 | 5.655485 | 20.973176 | 0.0003566 | 0.1206367 | ENSG00000134802 | SLC43A3 | solute carrier family 43 member 3 | 11 | 57406954 | 57427580 | protein_coding | HGNC:17466 | 3.6604881 | 1.7602112 | 5.9839448 | 5.1814551 | 6.3856815 | 3.4007382 | 3.4007382 | 5.9322745 | 3.0029199 |
| ENSG00000180044 | -2.7110914 | -3.0542803 | 5.823926 | 20.980676 | 0.0003594 | 0.1206367 | ENSG00000180044 | C3orf80 | chromosome 3 open reading frame 80 | 3 | 160225422 | 160228213 | protein_coding | HGNC:40048 | 5.6908018 | 7.6089526 | 4.8273842 | 3.2291590 | 3.8537595 | 3.9942003 | 3.9942004 | 4.1217415 | 6.9476262 |
| ENSG00000122641 | 2.0536652 | -0.9664633 | 6.933795 | 20.738785 | 0.0003689 | 0.1206367 | ENSG00000122641 | INHBA | inhibin subunit beta A | 7 | 41667168 | 41705834 | protein_coding | HGNC:6066 | 3.8218046 | 3.3648458 | 5.2025293 | 5.8375949 | 6.7014600 | 2.0030463 | 2.0030463 | 6.0449960 | 3.6113421 |
| ENSG00000185070 | 2.4954760 | 2.1857797 | 6.773473 | 20.556458 | 0.0003822 | 0.1206367 | ENSG00000185070 | FLRT2 | fibronectin leucine rich transmembrane protein 2 | 14 | 85530144 | 85654428 | protein_coding | HGNC:3761 | 5.0569697 | 3.6850817 | 6.5616874 | 6.4934534 | 6.9772845 | 5.8396490 | 5.8396490 | 6.6937840 | 4.5282981 |
| ENSG00000206538 | 1.8136773 | -0.4990604 | 5.606004 | 20.556165 | 0.0003833 | 0.1206367 | ENSG00000206538 | VGLL3 | vestigial like family member 3 | 3 | 86876388 | 86991149 | protein_coding | HGNC:24327 | 3.8996678 | 2.2143602 | 5.7701784 | 5.1996569 | 3.4178610 | 0.4697558 | 0.4697558 | 5.0876403 | 3.2902657 |
| ENSG00000126500 | -2.0698348 | -1.3418486 | 6.103639 | 20.563056 | 0.0003840 | 0.1206367 | ENSG00000126500 | FLRT1 | fibronectin leucine rich transmembrane protein 1 | 11 | 64035931 | 64119173 | protein_coding | HGNC:3760 | 5.0071253 | 4.9236354 | 2.6047277 | 3.4701005 | 2.7796684 | 3.6864677 | 3.6864677 | 3.0018838 | 4.9659843 |
| ENSG00000237724 | 5.4105337 | 8.9025091 | 3.840826 | 22.052063 | 0.0004062 | 0.1218709 | ENSG00000237724 | HSPA1A | heat shock protein family A (Hsp70) member 1A | HSCHR6_MHC_COX_CTG1 | 3292715 | 3295197 | protein_coding | HGNC:5232 | -13.2877124 | -13.2877124 | 1.6035316 | 1.7373662 | -13.2877124 | 4.6786534 | 4.6786534 | 1.0870602 | -13.2877124 |
| ENSG00000158169 | -2.1381657 | -0.7360423 | 8.708572 | 20.200192 | 0.0004074 | 0.1218709 | ENSG00000158169 | FANCC | FA complementation group C | 9 | 95099054 | 95426796 | protein_coding | HGNC:3584 | 7.4114142 | 8.4572073 | 6.3867768 | 5.9008821 | 5.4700684 | 7.4224607 | 7.4224607 | 5.9677393 | 8.0270663 |
| ENSG00000164694 | 4.4223485 | 2.9717118 | 7.536335 | 19.950492 | 0.0004305 | 0.1258023 | ENSG00000164694 | FNDC1 | fibronectin type III domain containing 1 | 6 | 159169400 | 159272108 | protein_coding | HGNC:21184 | 1.9522098 | -0.8750182 | 4.9745284 | 5.6220783 | 6.1281218 | 4.1805780 | 4.1805780 | 5.6499465 | 1.1423860 |
| ENSG00000144802 | 1.3447104 | -1.8565754 | 5.349349 | 19.801511 | 0.0004415 | 0.1260886 | ENSG00000144802 | NFKBIZ | NFKB inhibitor zeta | 3 | 101827991 | 101861022 | protein_coding | HGNC:29805 | 3.0267806 | 2.6910562 | 4.4138584 | 4.8722912 | 4.3788649 | 1.6165525 | 1.6165525 | 4.5730934 | 2.8686621 |
| ENSG00000157551 | 2.1424971 | -2.5647338 | 5.170742 | 19.476830 | 0.0004729 | 0.1320398 | ENSG00000157551 | KCNJ15 | potassium inwardly rectifying channel subfamily J member 15 | 21 | 38155549 | 38307357 | protein_coding | HGNC:6261 | 4.0083727 | 2.7244261 | 5.0102479 | 6.7824090 | 5.7506195 | 0.2365453 | 0.2365453 | 6.0308410 | 3.5047537 |
| ENSG00000164125 | 3.7660812 | 4.0053393 | 5.485989 | 18.943576 | 0.0005044 | 0.1377871 | ENSG00000164125 | GASK1B | golgi associated kinase 1B | 4 | 158124474 | 158173318 | protein_coding | HGNC:25312 | 0.5055922 | -2.4421518 | 3.6209945 | 4.1191450 | 4.0030970 | 4.2955801 | 4.2955801 | 3.9296433 | -0.3185822 |
| ENSG00000115380 | 4.5286147 | 2.0999007 | 7.341329 | 18.388430 | 0.0005854 | 0.1550487 | ENSG00000115380 | EFEMP1 | EGF containing fibulin extracellular matrix protein 1 | 2 | 55865967 | 55924139 | protein_coding | HGNC:3218 | 2.9205113 | -1.6300679 | 7.1176894 | 7.5453971 | 6.9379662 | 4.8278338 | 4.8278338 | 7.2233527 | 1.9807960 |
| ENSG00000163739 | 2.2643339 | 0.4134269 | 9.266314 | 18.282094 | 0.0005923 | 0.1550487 | ENSG00000163739 | CXCL1 | C-X-C motif chemokine ligand 1 | 4 | 73869393 | 73871308 | protein_coding | HGNC:4602 | 9.0275670 | 7.5182832 | 10.6206762 | 10.9366629 | 10.8555784 | 8.8870610 | 8.8870610 | 10.8104226 | 8.4618997 |
| ENSG00000137313 | 0.0000000 | 8.5975565 | 3.322775 | 29.457464 | 0.0006226 | 0.1596511 | ENSG00000137313 | TRIM26 | tripartite motif containing 26 | HSCHR6_MHC_QBL_CTG1 | 1439551 | 1468529 | protein_coding | HGNC:12962 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 3.9431950 | 3.9431946 | -13.2877124 | -13.2877124 |
| ENSG00000196141 | 2.0537504 | 1.2569002 | 6.845394 | 17.487421 | 0.0006989 | 0.1662178 | ENSG00000196141 | SPATS2L | spermatogenesis associated serine rich 2 like | 2 | 200305881 | 200482264 | protein_coding | HGNC:24574 | 4.1443738 | 3.9580548 | 7.2846109 | 7.5552514 | 6.9414392 | 5.8029078 | 5.8029079 | 7.2820356 | 4.0542199 |
| ENSG00000154175 | 3.1930478 | 1.3695063 | 7.140718 | 17.483988 | 0.0007004 | 0.1662178 | ENSG00000154175 | ABI3BP | ABI family member 3 binding protein | 3 | 100749156 | 100993515 | protein_coding | HGNC:17265 | 5.0355052 | 4.8545220 | 6.7815164 | 6.1344509 | 8.3601698 | 5.7517444 | 5.7517443 | 7.4061592 | 4.9478499 |
| ENSG00000142319 | -6.5097998 | 1.9054088 | 3.718586 | 22.927027 | 0.0007126 | 0.1662178 | ENSG00000142319 | SLC6A3 | solute carrier family 6 member 3 | 5 | 1392794 | 1445440 | protein_coding | HGNC:11049 | 2.3974588 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 3.4565652 | 3.4565652 | -13.2877124 | 1.3974859 |
| ENSG00000128342 | -0.0548543 | -2.9059821 | 6.130639 | 17.394059 | 0.0007129 | 0.1662178 | ENSG00000128342 | LIF | LIF interleukin 6 family cytokine | 22 | 30240453 | 30246759 | protein_coding | HGNC:6596 | 5.2974121 | 5.5126231 | 4.2415054 | 5.8196506 | 6.0525775 | 3.2133448 | 3.2133448 | 5.5624496 | 5.4090269 |
| ENSG00000138356 | 3.8537815 | 1.2971622 | 5.192066 | 17.255155 | 0.0007143 | 0.1662178 | ENSG00000138356 | AOX1 | aldehyde oxidase 1 | 2 | 200586014 | 200677064 | protein_coding | HGNC:553 | 3.6942816 | 1.3778312 | 6.1741552 | 3.6274724 | 4.3047078 | 1.1125026 | 1.1125026 | 5.1200888 | 2.9582304 |
| ENSG00000149968 | -2.8796836 | -4.7003720 | 7.347703 | 17.272519 | 0.0007323 | 0.1672939 | ENSG00000149968 | MMP3 | matrix metallopeptidase 3 | 11 | 102835801 | 102843609 | protein_coding | HGNC:7173 | 7.3744286 | 8.2508388 | 6.1691607 | 3.2723210 | 4.2677025 | 3.1907157 | 3.1907157 | 5.0716209 | 7.8781852 |
| ENSG00000242265 | 1.5026720 | 0.0914741 | 6.786674 | 16.979032 | 0.0007785 | 0.1746747 | ENSG00000242265 | PEG10 | paternally expressed 10 | 7 | 94656325 | 94669695 | protein_coding | HGNC:14005 | 4.1693309 | 3.3218285 | 5.4600824 | 4.6737546 | 6.0923629 | 3.7981058 | 3.7981055 | 5.5212047 | 3.8069375 |
| ENSG00000205238 | -0.5812215 | 1.3718476 | 7.584824 | 16.893938 | 0.0007928 | 0.1747576 | ENSG00000205238 | SPDYE2 | speedy/RINGO cell cycle regulator family member E2 | 7 | 102551226 | 102563538 | protein_coding | HGNC:33841 | 7.2159333 | 6.9211719 | 6.1338332 | 6.7098410 | 6.8728184 | 8.5102757 | 8.5102757 | 6.6053571 | 7.0760674 |
| ENSG00000124875 | 1.6319297 | -2.4670129 | 7.231044 | 16.747279 | 0.0008183 | 0.1760930 | ENSG00000124875 | CXCL6 | C-X-C motif chemokine ligand 6 | 4 | 73836640 | 73849064 | protein_coding | HGNC:10643 | 6.8191241 | 4.6767856 | 8.2982707 | 7.8374648 | 8.0170988 | 4.4060707 | 4.4060706 | 8.0635240 | 6.1136859 |
| ENSG00000185215 | 2.6010876 | 0.6773415 | 5.430722 | 16.751125 | 0.0008269 | 0.1760930 | ENSG00000185215 | TNFAIP2 | TNF alpha induced protein 2 | 14 | 103121476 | 103137439 | protein_coding | HGNC:11895 | 2.4381821 | 2.5502892 | 5.9721791 | 4.7478481 | 6.2671158 | 4.4733624 | 4.4733622 | 5.7958345 | 2.4953242 |
| ENSG00000169594 | 1.9779217 | 1.4058107 | 6.310153 | 16.381153 | 0.0008887 | 0.1811391 | ENSG00000169594 | BNC1 | basonuclin zinc finger protein 1 | 15 | 83255884 | 83284664 | protein_coding | HGNC:1081 | 2.8129241 | 2.4356267 | 4.8575025 | 5.0712348 | 4.6026261 | 4.0220806 | 4.0220806 | 4.8564169 | 2.6365743 |
| ENSG00000138821 | 2.3207975 | 1.0260374 | 5.440381 | 16.339665 | 0.0009037 | 0.1811391 | ENSG00000138821 | SLC39A8 | solute carrier family 39 member 8 | 4 | 102251080 | 102431258 | protein_coding | HGNC:20862 | 1.8532436 | 2.0936765 | 3.9947339 | 4.2329856 | 4.9446340 | 3.0866613 | 3.0866613 | 4.4493664 | 1.9784629 |
| ENSG00000015568 | -3.6060970 | -0.2875283 | 4.617021 | 14.974118 | 0.0009176 | 0.1811391 | ENSG00000015568 | RGPD5 | RANBP2 like and GRIP domain containing 5 | 2 | 109792758 | 109857705 | protein_coding | HGNC:32418 | 2.1141844 | 3.9733945 | 1.1179915 | -13.2877124 | 0.1992847 | 2.9902126 | 2.9902126 | 0.1456449 | 3.3246012 |
| ENSG00000116016 | 2.3095346 | 0.3575401 | 8.804888 | 16.152879 | 0.0009329 | 0.1811391 | ENSG00000116016 | EPAS1 | endothelial PAS domain protein 1 | 2 | 46293667 | 46386697 | protein_coding | HGNC:3374 | 5.4748815 | 4.5477027 | 7.5418919 | 7.1361455 | 7.6765680 | 5.5806374 | 5.5806373 | 7.4692534 | 5.0845282 |
| ENSG00000141753 | 2.6893559 | 2.6671284 | 9.552985 | 16.049727 | 0.0009548 | 0.1811391 | ENSG00000141753 | IGFBP4 | insulin like growth factor binding protein 4 | 17 | 40443450 | 40457725 | protein_coding | HGNC:5473 | 6.7534944 | 5.2279505 | 8.7544333 | 9.1173742 | 9.2171389 | 8.9728760 | 8.9728761 | 9.0429567 | 6.1836175 |
| ENSG00000180447 | 2.9452056 | 1.6111727 | 5.474220 | 16.083680 | 0.0009593 | 0.1811391 | ENSG00000180447 | GAS1 | growth arrest specific 1 | 9 | 86944362 | 86947506 | protein_coding | HGNC:4165 | 2.1384128 | 0.1308584 | 4.3931200 | 4.5783845 | 4.7500910 | 3.1893567 | 3.1893567 | 4.5812084 | 1.4588334 |
| ENSG00000112208 | 1.8040228 | 0.4075952 | 9.137343 | 16.016125 | 0.0009620 | 0.1811391 | ENSG00000112208 | BAG2 | BAG cochaperone 2 | 6 | 57172326 | 57189833 | protein_coding | HGNC:938 | 5.2202973 | 4.9550480 | 6.5052041 | 6.9613571 | 7.4226090 | 5.5738679 | 5.5738680 | 7.0112960 | 5.0937600 |
| ENSG00000128052 | 4.4637637 | 6.2905840 | 3.897693 | 14.655282 | 0.0009659 | 0.1811391 | ENSG00000128052 | KDR | kinase insert domain receptor | 4 | 55078481 | 55125595 | protein_coding | HGNC:6307 | -2.8115738 | -13.2877124 | 1.0671782 | 1.7620609 | -0.8152094 | 2.8557155 | 2.8557155 | 1.0132786 | -3.8105613 |
| ENSG00000136244 | 1.9304726 | -1.8594792 | 5.253945 | 15.760900 | 0.0010272 | 0.1853222 | ENSG00000136244 | IL6 | interleukin 6 | 7 | 22725884 | 22732002 | protein_coding | HGNC:6018 | 5.5567604 | 4.4561622 | 7.0166717 | 5.9759359 | 7.4999600 | 3.3740245 | 3.3740240 | 6.9597829 | 5.1089635 |
| ENSG00000273608 | -1.6437121 | -3.3734568 | 4.729052 | 15.804270 | 0.0010289 | 0.1853222 | ENSG00000273608 | SRCIN1 | SRC kinase signaling inhibitor 1 | HSCHR17_7_CTG4 | 2565317 | 2641249 | protein_coding | HGNC:29506 | 2.2912331 | 3.5177868 | 2.0226263 | 1.3376426 | 1.7953655 | 1.1850241 | 1.1850241 | 1.7458315 | 3.0311128 |
| ENSG00000254245 | -1.7027613 | 0.9112202 | 5.727044 | 15.721758 | 0.0010442 | 0.1853222 | ENSG00000254245 | PCDHGA3 | protocadherin gamma subfamily A, 3 | 5 | 141343829 | 141512975 | protein_coding | HGNC:8701 | 3.8841005 | 3.3608310 | 2.4935946 | 2.7080722 | 2.4050448 | 4.6397127 | 4.6397127 | 2.5412499 | 3.6460608 |
| ENSG00000123610 | 2.8170321 | 1.6501504 | 5.869605 | 15.682697 | 0.0010472 | 0.1853222 | ENSG00000123610 | TNFAIP6 | TNF alpha induced protein 6 | 2 | 151357592 | 151380046 | protein_coding | HGNC:11898 | 3.8361455 | 2.4576673 | 6.4446871 | 5.6580282 | 6.6096417 | 5.0650568 | 5.0650568 | 6.2931199 | 3.3056401 |
| ENSG00000163734 | 2.0102109 | -0.7230929 | 6.727039 | 15.390757 | 0.0011111 | 0.1895901 | ENSG00000163734 | CXCL3 | C-X-C motif chemokine ligand 3 | 4 | 74036589 | 74038807 | protein_coding | HGNC:4604 | 6.1078351 | 4.5120304 | 7.7102145 | 7.8885862 | 7.3671386 | 4.8101287 | 4.8101289 | 7.6712029 | 5.5201695 |
| ENSG00000120738 | 2.1117388 | -0.2529367 | 7.571427 | 15.386449 | 0.0011116 | 0.1895901 | ENSG00000120738 | EGR1 | early growth response 1 | 5 | 138465479 | 138469303 | protein_coding | HGNC:3238 | 4.9497716 | 3.6583343 | 6.9348170 | 6.9895951 | 6.0871129 | 4.3002997 | 4.3002995 | 6.7252374 | 4.4439759 |
| ENSG00000064666 | 2.1898197 | 1.3714629 | 5.633172 | 15.375409 | 0.0011221 | 0.1895901 | ENSG00000064666 | CNN2 | calponin 2 | 19 | 1026586 | 1039068 | protein_coding | HGNC:2156 | 2.9458983 | 3.0010268 | 4.8167584 | 5.1674422 | 5.6662247 | 4.3801586 | 4.3801586 | 5.2593036 | 2.9737259 |
| ENSG00000181291 | -3.1283331 | -1.0643656 | 4.428703 | 14.679201 | 0.0011317 | 0.1895901 | ENSG00000181291 | TMEM132E | transmembrane protein 132E | 17 | 34579487 | 34639318 | protein_coding | HGNC:26991 | 2.9049160 | 3.4228733 | 0.5357872 | -2.4316293 | -0.2677829 | 2.0844780 | 2.0844780 | -0.2829745 | 3.1870156 |
| ENSG00000170345 | 3.2295707 | 2.5024718 | 4.125979 | 14.749522 | 0.0011489 | 0.1899474 | ENSG00000170345 | FOS | Fos proto-oncogene, AP-1 transcription factor subunit | 14 | 75278826 | 75283190 | protein_coding | HGNC:3796 | 1.4022130 | 2.4452163 | 4.8342854 | 5.5194586 | 5.6297284 | 3.5944690 | 3.5944685 | 5.3681827 | 2.0159863 |
| ENSG00000152766 | 5.7887437 | 0.7155386 | 6.832660 | 14.928486 | 0.0011913 | 0.1919141 | ENSG00000152766 | ANKRD22 | ankyrin repeat domain 22 | 10 | 88819896 | 88851844 | protein_coding | HGNC:28321 | 0.9004584 | -13.2877124 | 4.0716642 | 7.1644331 | 4.6353698 | 0.7531655 | 0.7531655 | 5.9473630 | -0.0994643 |
| ENSG00000184347 | 2.6359198 | 2.1071523 | 7.078170 | 15.077351 | 0.0011966 | 0.1919141 | ENSG00000184347 | SLIT3 | slit guidance ligand 3 | 5 | 168661740 | 169301139 | protein_coding | HGNC:11087 | 2.8961472 | 1.3149934 | 4.9385105 | 4.9424729 | 5.6272155 | 4.5829774 | 4.5829774 | 5.2073785 | 2.3121380 |
| ENSG00000272899 | -2.0242414 | -2.4542598 | 5.221560 | 15.104930 | 0.0012066 | 0.1919141 | ENSG00000272899 | SPMIP1 | sperm microtubule inner protein 1 | 7 | 128866330 | 128872047 | protein_coding | HGNC:52392 | 3.7427934 | 4.5143232 | 1.5668707 | 2.0456799 | 2.8883571 | 1.7430733 | 1.7430733 | 2.2725766 | 4.1795304 |
| ENSG00000162595 | 2.9245794 | 2.3912059 | 4.396579 | 14.733100 | 0.0012533 | 0.1947962 | ENSG00000162595 | DIRAS3 | DIRAS family GTPase 3 | 1 | 68045886 | 68051717 | protein_coding | HGNC:687 | 0.8891674 | 1.4194990 | 3.9002453 | 3.9228181 | 4.7770304 | 3.9922858 | 3.9922858 | 4.2609085 | 1.1785655 |
| ENSG00000122194 | 2.6413692 | 4.1938004 | 4.002102 | 14.180666 | 0.0012599 | 0.1947962 | ENSG00000122194 | PLG | plasminogen | 6 | 160702194 | 160754097 | protein_coding | HGNC:9071 | 1.9551900 | 2.6249527 | 5.4635894 | 5.5373713 | 3.5623135 | 6.6515499 | 6.6515499 | 5.0928627 | 2.3285938 |
| ENSG00000088826 | 1.8881776 | 0.6517070 | 6.440265 | 14.822475 | 0.0012713 | 0.1947962 | ENSG00000088826 | SMOX | spermine oxidase | 20 | 4120980 | 4187747 | protein_coding | HGNC:15862 | 4.3472170 | 3.6039568 | 6.0898832 | 5.8180766 | 6.2586092 | 4.7739923 | 4.7739921 | 6.0667830 | 4.0229315 |
| ENSG00000163661 | 2.4622247 | -0.3310056 | 7.046678 | 14.739267 | 0.0012961 | 0.1958421 | ENSG00000163661 | PTX3 | pentraxin 3 | 3 | 157436850 | 157443633 | protein_coding | HGNC:9692 | 5.0769891 | 3.2895005 | 7.5222687 | 6.4783175 | 7.0785211 | 4.2333123 | 4.2333121 | 7.0880086 | 4.4439978 |
| ENSG00000205213 | 2.6022429 | 0.2031137 | 4.208690 | 14.617189 | 0.0013226 | 0.1958421 | ENSG00000205213 | LGR4 | leucine rich repeat containing G protein-coupled receptor 4 | 11 | 27365961 | 27472790 | protein_coding | HGNC:13299 | -0.3958717 | -0.0533769 | 2.4498041 | 2.0665931 | 2.8976329 | 0.0159100 | 0.0159100 | 2.5113339 | -0.2144846 |
| ENSG00000238083 | 0.6135158 | 1.9042536 | 8.186428 | 14.614688 | 0.0013346 | 0.1958421 | ENSG00000238083 | LRRC37A2 | leucine rich repeat containing 37A | 17 | 46511508 | 46556910 | protein_coding | HGNC:32404 | 5.1844892 | 6.1822914 | 6.5680013 | 6.5996150 | 6.2024748 | 7.6977637 | 7.6977637 | 6.4676103 | 5.7679868 |
| ENSG00000213024 | 1.6307818 | 0.5833265 | 6.914486 | 14.571709 | 0.0013492 | 0.1958421 | ENSG00000213024 | NUP62 | nucleoporin 62 | 19 | 49906825 | 49929764 | protein_coding | HGNC:8066 | 5.0081204 | 4.0368524 | 5.1772530 | 5.8638187 | 5.8534301 | 4.7588321 | 4.7588319 | 5.6652014 | 4.6027241 |
| ENSG00000081041 | 1.3661716 | -0.3775781 | 6.028193 | 14.489944 | 0.0013777 | 0.1958421 | ENSG00000081041 | CXCL2 | C-X-C motif chemokine ligand 2 | 4 | 74097040 | 74099196 | protein_coding | HGNC:4603 | 5.4424070 | 5.4720792 | 6.6541496 | 7.1245141 | 6.8574808 | 4.9700495 | 4.9700493 | 6.8916372 | 5.4573195 |
| ENSG00000103512 | 3.0653226 | -5.5118560 | 4.770406 | 14.374751 | 0.0014171 | 0.1958421 | ENSG00000103512 | NOMO1 | NODAL modulator 1 | 16 | 14833721 | 14896157 | protein_coding | HGNC:30060 | -13.2877124 | 1.5509972 | 3.8146197 | 3.8967648 | 2.7771440 | -13.2877124 | -13.2877124 | 3.5777593 | 0.5510464 |
| ENSG00000173826 | -1.5423445 | 1.4804385 | 4.208685 | 14.066244 | 0.0014300 | 0.1958421 | ENSG00000173826 | KCNH6 | potassium voltage-gated channel subfamily H member 6 | 17 | 63523334 | 63548977 | protein_coding | HGNC:18862 | 2.3633480 | 2.7003556 | 0.7171743 | 1.5837087 | 1.0694712 | 4.3634885 | 4.3634885 | 1.1677895 | 2.5416700 |
| ENSG00000143702 | 0.5638069 | -2.9773738 | 5.773875 | 14.311479 | 0.0014392 | 0.1958421 | ENSG00000143702 | CEP170 | centrosomal protein 170 | 1 | 243124428 | 243255793 | protein_coding | HGNC:28920 | 4.2496927 | 5.0712298 | 5.6117982 | 5.1360270 | 4.6790127 | -0.0110979 | -0.0110979 | 5.1922192 | 4.7181654 |
| ENSG00000170356 | 3.7516354 | 0.9365562 | 4.896447 | 14.052389 | 0.0014722 | 0.1958421 | ENSG00000170356 | OR2A20P | olfactory receptor family 2 subfamily A member 20 pseudogene | 7 | 144250671 | 144251603 | transcribed_unprocessed_pseudogene | HGNC:15413 | 1.7632395 | -13.2877124 | 4.2131104 | 4.8057144 | 3.7313378 | 1.3660189 | 1.3660189 | 4.3170280 | 0.7632824 |
| ENSG00000196352 | 2.2476741 | 0.5356302 | 6.287182 | 14.186019 | 0.0014857 | 0.1958421 | ENSG00000196352 | CD55 | CD55 molecule (Cromer blood group) | 1 | 207321519 | 207386804 | protein_coding | HGNC:2665 | 4.3608856 | 3.4698013 | 6.2941421 | 5.7961198 | 6.7700294 | 4.6170816 | 4.6170816 | 6.3409126 | 3.9830748 |
| ENSG00000148926 | 1.4541779 | -1.0805283 | 5.968962 | 14.177343 | 0.0014878 | 0.1958421 | ENSG00000148926 | ADM | adrenomedullin | 11 | 10305073 | 10307397 | protein_coding | HGNC:259 | 4.8455845 | 4.4162206 | 5.6631028 | 6.6003619 | 6.2023147 | 3.5886233 | 3.5886235 | 6.2051348 | 4.6468170 |
| ENSG00000248288 | 3.9964976 | 0.3041322 | 3.297507 | 12.420461 | 0.0014946 | 0.1958421 | ENSG00000248288 | 5 | 65209921 | 65210948 | processed_pseudogene | 0.6944078 | 0.7781488 | 4.4307565 | 4.8287570 | 5.7119399 | 1.1407630 | 1.1407630 | 5.0931330 | 0.7368862 | |||
| ENSG00000138061 | 1.9047940 | 0.1898090 | 6.206006 | 14.158414 | 0.0014950 | 0.1958421 | ENSG00000138061 | CYP1B1 | cytochrome P450 family 1 subfamily B member 1 | 2 | 38066973 | 38109902 | protein_coding | HGNC:2597 | 3.3911088 | 2.4345420 | 5.1471204 | 4.7310654 | 5.0085658 | 2.8608500 | 2.8608500 | 4.9724448 | 2.9906948 |
| ENSG00000133687 | 5.2569103 | 4.7838382 | 3.877434 | 12.996444 | 0.0015113 | 0.1958421 | ENSG00000133687 | TMTC1 | transmembrane O-mannosyltransferase targeting cadherins 1 | 12 | 29500840 | 29784759 | protein_coding | HGNC:24099 | 1.9557071 | -13.2877124 | 2.4090523 | 1.4661666 | 2.2115876 | 1.4519960 | 1.4519960 | 2.0824720 | 0.9557443 |
| ENSG00000275331 | 4.4108891 | 5.1740323 | 4.078997 | 12.351034 | 0.0015132 | 0.1958421 | ENSG00000275331 | ABCC6 | ATP binding cassette subfamily C member 6 | HSCHR16_1_CTG1 | 1806848 | 1881517 | protein_coding | HGNC:57 | -13.2877124 | -1.8996789 | 2.4167063 | 1.6912943 | 0.5166072 | 2.4891385 | 2.4891385 | 1.7369015 | -2.8991407 |
| ENSG00000060718 | 3.7044696 | -5.2413786 | 5.087007 | 13.976560 | 0.0015402 | 0.1958421 | ENSG00000060718 | COL11A1 | collagen type XI alpha 1 chain | 1 | 102876467 | 103108872 | protein_coding | HGNC:2186 | -0.4326103 | 1.6653396 | 2.2968805 | 3.9771542 | 4.5791042 | -13.2877124 | -13.2877124 | 3.8928867 | 0.9682021 |
| ENSG00000117971 | -1.8819403 | -0.9568915 | 5.340190 | 14.081617 | 0.0015430 | 0.1958421 | ENSG00000117971 | CHRNB4 | cholinergic receptor nicotinic beta 4 subunit | 15 | 78624111 | 78727754 | protein_coding | HGNC:1964 | 4.2567584 | 6.2022660 | 3.4987233 | 4.5974932 | 2.5271554 | 3.8404017 | 3.8404018 | 3.7823173 | 5.5352586 |
| ENSG00000075420 | 1.5908349 | 0.5924912 | 6.949672 | 13.932264 | 0.0015796 | 0.1984714 | ENSG00000075420 | FNDC3B | fibronectin type III domain containing 3B | 3 | 172039578 | 172401669 | protein_coding | HGNC:24670 | 3.7347495 | 4.1189710 | 4.7986286 | 6.0942931 | 5.4675669 | 4.5958737 | 4.5958736 | 5.5484641 | 3.9396131 |
| ENSG00000162407 | 1.7045327 | 2.2767233 | 6.614886 | 13.755994 | 0.0016529 | 0.2056263 | ENSG00000162407 | PLPP3 | phospholipid phosphatase 3 | 1 | 56494761 | 56645301 | protein_coding | HGNC:9229 | 3.6026154 | 4.3403152 | 4.8906317 | 4.9765660 | 6.3495532 | 6.5789260 | 6.5789260 | 5.5718270 | 4.0181116 |
| ENSG00000173376 | 1.5098533 | 1.7240439 | 5.631778 | 13.728287 | 0.0016701 | 0.2057335 | ENSG00000173376 | NDNF | neuron derived neurotrophic factor | 4 | 121035613 | 121073021 | protein_coding | HGNC:26256 | 2.7022960 | 2.9590490 | 4.6115748 | 4.3528135 | 4.3872314 | 4.6168512 | 4.6168512 | 4.4551781 | 2.8363768 |
| ENSG00000151150 | -1.8384147 | -2.9692374 | 5.167339 | 13.590543 | 0.0017451 | 0.2086028 | ENSG00000151150 | ANK3 | ankyrin 3 | 10 | 60026298 | 60733490 | protein_coding | HGNC:494 | 3.0157323 | 3.5624007 | 2.7475096 | 3.1256777 | 3.1202882 | -0.1148708 | -0.1148708 | 3.0083522 | 3.3148061 |
| ENSG00000172817 | 3.1455873 | 1.4887291 | 4.145323 | 13.256341 | 0.0017468 | 0.2086028 | ENSG00000172817 | CYP7B1 | cytochrome P450 family 7 subfamily B member 1 | 8 | 64587763 | 64798737 | protein_coding | HGNC:2652 | -0.9522522 | 2.3496506 | 2.2398495 | 4.4873511 | 5.2897169 | 0.1626805 | 0.1626805 | 4.4653256 | 1.4889864 |
| ENSG00000115459 | -1.9085896 | -2.1614980 | 4.603585 | 13.589120 | 0.0017491 | 0.2086028 | ENSG00000115459 | ELMOD3 | ELMO domain containing 3 | 2 | 85354394 | 85391752 | protein_coding | HGNC:26158 | 5.5152407 | 5.6443437 | 4.4081879 | 4.4752177 | 1.6246512 | 4.1643180 | 4.1643181 | 3.9559953 | 5.5812358 |
| ENSG00000153823 | 2.1309514 | 1.0855822 | 5.302544 | 13.501665 | 0.0017767 | 0.2086028 | ENSG00000153823 | PID1 | phosphotyrosine interaction domain containing 1 | 2 | 228850526 | 229271287 | protein_coding | HGNC:26084 | 2.1255671 | 3.2354965 | 4.0346859 | 4.8171258 | 4.9206563 | 3.5362663 | 3.5362668 | 4.6413004 | 2.7847385 |
| ENSG00000147488 | -1.1141048 | -1.7064512 | 6.634919 | 13.454879 | 0.0017842 | 0.2086028 | ENSG00000147488 | ST18 | ST18 C2H2C-type zinc finger transcription factor | 8 | 52110838 | 52460959 | protein_coding | HGNC:18695 | 5.1920498 | 6.1572070 | 5.4585558 | 4.0334086 | 4.2926521 | 3.7017299 | 3.7017298 | 4.7359981 | 5.7538775 |
| ENSG00000204463 | -6.8277536 | 0.9939717 | 3.555705 | 16.967810 | 0.0017946 | 0.2086028 | ENSG00000204463 | BAG6 | BAG cochaperone 6 | 6 | 31639028 | 31652705 | protein_coding | HGNC:13919 | 2.0027749 | 1.6626366 | -13.2877124 | -13.2877124 | -13.2877124 | 3.6451892 | 3.6451892 | -13.2877124 | 1.8427070 |
| ENSG00000144893 | 3.4365644 | 1.2479612 | 5.765125 | 13.435301 | 0.0018096 | 0.2086028 | ENSG00000144893 | MED12L | mediator complex subunit 12L | 3 | 151085286 | 151437072 | protein_coding | HGNC:16050 | -0.2322062 | 0.3116612 | 2.0589208 | 2.4068626 | 4.9164539 | 0.8674782 | 0.8674782 | 3.7249945 | 0.0652056 |
| ENSG00000167460 | 1.4221561 | 0.2052642 | 8.254068 | 13.304038 | 0.0018534 | 0.2108491 | ENSG00000167460 | TPM4 | tropomyosin 4 | 19 | 16067021 | 16103005 | protein_coding | HGNC:12013 | 6.2214761 | 5.7249355 | 7.4945060 | 7.5931171 | 7.7191782 | 6.3431583 | 6.3431583 | 7.6052051 | 5.9944634 |
| ENSG00000230624 | -8.1450125 | 0.3295881 | 4.446403 | 16.679702 | 0.0018744 | 0.2108491 | ENSG00000230624 | DDX39B | DExD-box helicase 39B | HSCHR6_MHC_DBB_CTG1 | 2777992 | 2794348 | protein_coding | HGNC:13917 | 1.2504268 | 3.9720233 | -13.2877124 | -13.2877124 | -13.2877124 | 3.4830155 | 3.4830155 | -13.2877124 | 3.1756712 |
| ENSG00000278312 | 0.0000000 | 8.1814889 | 2.996294 | 19.841974 | 0.0018794 | 0.2108491 | ENSG00000278312 | LENG9 | leukocyte receptor cluster member 9 | HSCHR19LRC_COX1_CTG3_1 | 368305 | 370225 | protein_coding | HGNC:16306 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 4.3809492 | 4.3809490 | -13.2877124 | -13.2877124 |
| ENSG00000151790 | -0.1701599 | 2.5999557 | 4.159511 | 13.038515 | 0.0019872 | 0.2209690 | ENSG00000151790 | TDO2 | tryptophan 2,3-dioxygenase | 4 | 155854738 | 155920406 | protein_coding | HGNC:11708 | 2.6477471 | 2.3016400 | 2.2632400 | 3.1130390 | 1.0651925 | 5.1704571 | 5.1704571 | 2.3734316 | 2.4850478 |
| ENSG00000149257 | 1.9539143 | 1.4657381 | 8.189845 | 12.915149 | 0.0020527 | 0.2221031 | ENSG00000149257 | SERPINH1 | serpin family H member 1 | 11 | 75562056 | 75572783 | protein_coding | HGNC:1546 | 5.7735641 | 4.8537655 | 7.2994719 | 8.0112659 | 8.0404828 | 7.3056549 | 7.3056550 | 7.8219245 | 5.3857589 |
| ENSG00000148344 | 1.8359364 | 0.7695242 | 5.992005 | 12.861977 | 0.0020868 | 0.2221031 | ENSG00000148344 | PTGES | prostaglandin E synthase | 9 | 129738331 | 129753042 | protein_coding | HGNC:9599 | 4.2973198 | 3.4485779 | 5.7445057 | 6.0535191 | 5.9682210 | 4.8044715 | 4.8044713 | 5.9278747 | 3.9344835 |
| ENSG00000081692 | -1.7448097 | -0.5835000 | 7.661316 | 12.791597 | 0.0021221 | 0.2221031 | ENSG00000081692 | JMJD4 | jumonji domain containing 4 | 1 | 227730425 | 227735411 | protein_coding | HGNC:25724 | 6.6277524 | 6.7779612 | 5.8539729 | 5.0803334 | 4.0408881 | 6.3089339 | 6.3089340 | 5.1716796 | 6.7048108 |
| ENSG00000237412 | -2.5734323 | -4.2835759 | 3.621398 | 12.092047 | 0.0021224 | 0.2221031 | ENSG00000237412 | PRSS56 | serine protease 56 | 2 | 232520388 | 232525716 | protein_coding | HGNC:39433 | 3.4639471 | 4.7363760 | 2.4271247 | 2.6364089 | 1.2462409 | -0.9002874 | -0.9002874 | 2.2191168 | 4.2361196 |
| ENSG00000073756 | -0.7666899 | -2.4798161 | 5.850772 | 12.792828 | 0.0021251 | 0.2221031 | ENSG00000073756 | PTGS2 | prostaglandin-endoperoxide synthase 2 | 1 | 186671791 | 186680922 | protein_coding | HGNC:9605 | 5.1098687 | 4.4512665 | 4.1994277 | 3.1549880 | 3.7720387 | 3.2370411 | 3.2370411 | 3.7704990 | 4.8178279 |
| ENSG00000224006 | -7.3177714 | -7.3177714 | 3.205484 | 15.991049 | 0.0021338 | 0.2221031 | ENSG00000224006 | HSCHR6_MHC_COX_CTG1 | 1485506 | 1486509 | unprocessed_pseudogene | 4.7335124 | 4.5074100 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 4.6248864 | |||
| ENSG00000164082 | -2.2654983 | -3.0607511 | 3.917332 | 12.459661 | 0.0021798 | 0.2221031 | ENSG00000164082 | GRM2 | glutamate metabotropic receptor 2 | 3 | 51707068 | 51718613 | protein_coding | HGNC:4594 | 3.2128308 | 2.8956231 | 2.0631654 | 0.9042089 | -0.0816412 | 0.8882332 | 0.8882332 | 1.2214694 | 3.0629275 |
| ENSG00000167996 | 1.2817077 | 0.3296882 | 11.610018 | 12.648370 | 0.0022041 | 0.2221031 | ENSG00000167996 | FTH1 | ferritin heavy chain 1 | 11 | 61959718 | 61967634 | protein_coding | HGNC:3976 | 11.0859067 | 11.1034913 | 12.4884986 | 12.3376742 | 12.5335624 | 11.4856247 | 11.4856246 | 12.4556496 | 11.0947257 |
| ENSG00000138622 | -3.7613971 | -1.1486914 | 3.291962 | 10.311604 | 0.0022118 | 0.2221031 | ENSG00000138622 | HCN4 | hyperpolarization activated cyclic nucleotide gated potassium channel 4 | 15 | 73319859 | 73368958 | protein_coding | HGNC:16882 | 0.8383629 | 1.5026799 | -1.7760635 | -2.7434724 | -13.2877124 | 0.0828388 | 0.0828388 | -2.7647906 | 1.2084255 |
| ENSG00000229698 | -5.8340145 | -9.1876761 | 4.813869 | 10.261416 | 0.0022558 | 0.2221031 | ENSG00000229698 | HLA-F | major histocompatibility complex, class I, F | HSCHR6_MHC_SSTO_CTG1 | 1029074 | 1044770 | protein_coding | HGNC:4963 | -13.2877124 | 7.2595303 | -13.2877124 | 1.7509336 | 3.7934976 | -13.2877124 | -13.2877124 | 2.5220585 | 6.2595313 |
| ENSG00000168237 | -0.6791922 | -2.8988876 | 6.845265 | 12.552461 | 0.0022630 | 0.2221031 | ENSG00000168237 | GLYCTK | glycerate kinase | 3 | 52287089 | 52295257 | protein_coding | HGNC:24247 | 5.4822340 | 7.1264171 | 5.9142222 | 5.9617085 | 6.2188566 | 3.7038325 | 3.7038327 | 6.0379185 | 6.5268757 |
| ENSG00000125538 | -1.8648074 | -2.6795071 | 4.905980 | 12.604787 | 0.0022652 | 0.2221031 | ENSG00000125538 | IL1B | interleukin 1 beta | 2 | 112829751 | 112836816 | protein_coding | HGNC:5992 | 5.0431351 | 5.3851195 | 2.8501017 | 4.2006149 | 2.7222586 | 2.5743622 | 2.5743622 | 3.4238727 | 5.2242369 |
| ENSG00000100095 | -1.3120244 | -1.5452835 | 6.031172 | 12.535577 | 0.0022790 | 0.2221031 | ENSG00000100095 | SEZ6L | seizure related 6 homolog like | 22 | 26169462 | 26383597 | protein_coding | HGNC:10763 | 4.4421449 | 4.8740459 | 3.4307413 | 4.0296436 | 3.1783018 | 3.4159172 | 3.4159168 | 3.5916782 | 4.6741979 |
| ENSG00000126785 | 2.9452064 | 2.2878770 | 3.890339 | 12.168271 | 0.0022817 | 0.2221031 | ENSG00000126785 | RHOJ | ras homolog family member J | 14 | 63204114 | 63293508 | protein_coding | HGNC:688 | -0.5572104 | -0.4775043 | 2.8299709 | 3.8311842 | 2.8490255 | 3.4667670 | 3.4667670 | 3.2504005 | -0.5168070 |
| ENSG00000134352 | 1.3330970 | 0.2001732 | 6.291348 | 12.519815 | 0.0022843 | 0.2221031 | ENSG00000134352 | IL6ST | interleukin 6 cytokine family signal transducer | 5 | 55935095 | 55995022 | protein_coding | HGNC:6021 | 4.3333144 | 2.1372058 | 3.7960539 | 5.6890822 | 5.6713240 | 4.2360670 | 4.2360670 | 5.2785312 | 3.6180953 |
| ENSG00000024422 | 1.4210738 | 0.7998886 | 6.879480 | 12.478480 | 0.0023090 | 0.2221031 | ENSG00000024422 | EHD2 | EH domain containing 2 | 19 | 47713422 | 47743134 | protein_coding | HGNC:3243 | 4.3133535 | 3.9818968 | 5.7663332 | 5.6680055 | 5.7729437 | 4.9025643 | 4.9025642 | 5.7365527 | 4.1571230 |
| ENSG00000154736 | 2.2449731 | 1.3232082 | 7.620914 | 12.477428 | 0.0023093 | 0.2221031 | ENSG00000154736 | ADAMTS5 | ADAM metallopeptidase with thrombospondin type 1 motif 5 | 21 | 26917922 | 26967088 | protein_coding | HGNC:221 | 3.0606835 | 1.7111579 | 4.7025060 | 4.7857090 | 5.2674930 | 3.9731182 | 3.9731182 | 4.9407799 | 2.5382792 |
| ENSG00000189058 | 1.0790787 | 3.0053660 | 4.184999 | 12.527356 | 0.0023156 | 0.2221031 | ENSG00000189058 | APOD | apolipoprotein D | 3 | 195568705 | 195584033 | protein_coding | HGNC:612 | 2.9318549 | 3.4296853 | 4.6501457 | 3.5845800 | 4.6815731 | 6.1835785 | 6.1835785 | 4.3870005 | 3.2021378 |
| ENSG00000143867 | 1.3799096 | 3.5313493 | 4.251602 | 12.445055 | 0.0023349 | 0.2222548 | ENSG00000143867 | OSR1 | odd-skipped related transcription factor 1 | 2 | 19351485 | 19358623 | protein_coding | HGNC:8111 | 1.5264940 | -0.0519449 | 2.3006890 | 2.7481394 | 2.9440959 | 4.6515528 | 4.6515528 | 2.6886551 | 0.9431652 |
| ENSG00000149131 | 3.5286235 | 2.8718395 | 4.771297 | 12.183051 | 0.0023893 | 0.2239441 | ENSG00000149131 | SERPING1 | serpin family G member 1 | 11 | 57597387 | 57619171 | protein_coding | HGNC:1228 | 1.1898960 | 1.2139637 | 5.4289234 | 3.6659888 | 4.6439303 | 3.8088743 | 3.8088743 | 4.7508538 | 1.2019801 |
| ENSG00000216490 | -1.1935171 | -7.9431015 | 4.263430 | 12.400071 | 0.0023973 | 0.2239441 | ENSG00000216490 | IFI30 | IFI30 lysosomal thiol reductase | 19 | 18173162 | 18178117 | protein_coding | HGNC:5398 | 5.2350662 | 5.3567262 | 4.7904158 | 4.3003786 | 2.6597531 | -13.2877124 | -13.2877124 | 4.1617773 | 5.2971782 |
| ENSG00000118503 | 1.5984197 | -0.2794634 | 5.250112 | 12.345436 | 0.0024062 | 0.2239441 | ENSG00000118503 | TNFAIP3 | TNF alpha induced protein 3 | 6 | 137867214 | 137883314 | protein_coding | HGNC:11896 | 2.5726751 | 3.3718148 | 4.6395399 | 4.5960946 | 5.0859231 | 1.6819718 | 1.6819718 | 4.7913792 | 3.0268841 |
| ENSG00000147257 | 7.4622336 | 3.2493460 | 3.677069 | 13.563434 | 0.0024288 | 0.2239441 | ENSG00000147257 | GPC3 | glypican 3 | X | 133535745 | 133987100 | protein_coding | HGNC:4451 | -13.2877124 | -13.2877124 | 1.7266691 | 3.6022062 | 3.8624836 | -1.0317839 | -1.0317839 | 3.3218917 | -13.2877124 |
| ENSG00000111799 | 2.3613418 | 0.5289573 | 7.789569 | 12.240783 | 0.0024639 | 0.2239441 | ENSG00000111799 | COL12A1 | collagen type XII alpha 1 chain | 6 | 75084326 | 75206267 | protein_coding | HGNC:2188 | 3.6718448 | 2.4067075 | 4.5107181 | 5.9367990 | 5.6452658 | 3.9849108 | 3.9849108 | 5.4822229 | 3.1737269 |
| ENSG00000011347 | -1.3899884 | 0.0353958 | 8.854907 | 12.239267 | 0.0024644 | 0.2239441 | ENSG00000011347 | SYT7 | synaptotagmin 7 | 11 | 61513714 | 61581148 | protein_coding | HGNC:11514 | 7.2792736 | 7.3952168 | 6.5848219 | 5.6775756 | 5.5706939 | 7.4080247 | 7.4080247 | 6.0201512 | 7.3384095 |
| ENSG00000168394 | 4.5121048 | 3.8165623 | 4.812099 | 11.494066 | 0.0024911 | 0.2239441 | ENSG00000168394 | TAP1 | transporter 1, ATP binding cassette subfamily B member | 6 | 32845209 | 32853816 | protein_coding | HGNC:43 | -13.2877124 | 0.8091889 | 3.7401170 | 4.4753084 | 6.0875277 | 4.1718703 | 4.1718703 | 5.1100429 | -0.1907288 |
| ENSG00000080644 | -1.2590700 | -0.9864462 | 9.075928 | 12.183803 | 0.0025024 | 0.2239441 | ENSG00000080644 | CHRNA3 | cholinergic receptor nicotinic alpha 3 subunit | 15 | 78593052 | 78621295 | protein_coding | HGNC:1957 | 9.8357369 | 10.1521010 | 8.8605984 | 8.8771259 | 8.4188273 | 8.9142737 | 8.9142736 | 8.7338878 | 10.0025734 |
| ENSG00000114544 | -1.2669217 | 0.9389255 | 6.328518 | 12.172143 | 0.0025198 | 0.2239441 | ENSG00000114544 | SLC41A3 | solute carrier family 41 member 3 | 3 | 126006357 | 126101561 | protein_coding | HGNC:31046 | 4.9643788 | 5.6004014 | 4.5794036 | 3.8914148 | 3.1572273 | 6.1272974 | 6.1272973 | 3.9900109 | 5.3171593 |
| ENSG00000167615 | 4.3207153 | -2.6898873 | 3.315870 | 10.774503 | 0.0025370 | 0.2239441 | ENSG00000167615 | LENG8 | leukocyte receptor cluster member 8 | 19 | 54449190 | 54462016 | protein_coding | HGNC:15500 | -1.6256939 | -13.2877124 | 1.8428312 | 1.7000468 | 2.1159385 | -13.2877124 | -13.2877124 | 1.8967198 | -2.6252487 |
| ENSG00000212807 | 7.2619048 | 5.7019945 | 3.615597 | 13.369565 | 0.0025487 | 0.2239441 | ENSG00000212807 | OR2A42 | olfactory receptor family 2 subfamily A member 42 | 7 | 144228244 | 144239605 | protein_coding | HGNC:31230 | -13.2877124 | -13.2877124 | 2.6917434 | 1.0782218 | 1.7513909 | 0.3700035 | 0.3700035 | 1.9926716 | -13.2877124 |
| ENSG00000144645 | 2.2008287 | 1.3190529 | 4.928067 | 12.060067 | 0.0026194 | 0.2271015 | ENSG00000144645 | OSBPL10 | oxysterol binding protein like 10 | 3 | 31657912 | 32077580 | protein_coding | HGNC:16395 | 2.5959180 | -0.2464280 | 3.7754832 | 3.0628401 | 2.2064297 | 3.2218785 | 3.2218785 | 3.1519445 | 1.7842355 |
| ENSG00000140937 | 2.0902395 | 1.8198722 | 7.005668 | 12.020324 | 0.0026207 | 0.2271015 | ENSG00000140937 | CDH11 | cadherin 11 | 16 | 64943753 | 65126112 | protein_coding | HGNC:1750 | 5.1673746 | 4.9305373 | 5.7262082 | 6.9634492 | 7.5837344 | 7.4424701 | 7.4424701 | 6.9447477 | 5.0538104 |
| ENSG00000142798 | 2.1452012 | 0.9339347 | 7.997604 | 11.958186 | 0.0026652 | 0.2293482 | ENSG00000142798 | HSPG2 | heparan sulfate proteoglycan 2 | 1 | 21822244 | 21937310 | protein_coding | HGNC:5273 | 3.9826948 | 3.4696852 | 4.5112926 | 4.6494330 | 5.4504484 | 3.9701972 | 3.9701975 | 4.9327689 | 3.7488734 |
| ENSG00000116729 | 1.5837905 | 0.3842221 | 5.561634 | 11.946167 | 0.0026832 | 0.2293482 | ENSG00000116729 | WLS | Wnt ligand secretion mediator | 1 | 68098473 | 68233120 | protein_coding | HGNC:30238 | 3.3540636 | 3.4992581 | 5.3189383 | 5.4889087 | 5.5493614 | 3.6175225 | 3.6175230 | 5.4556609 | 3.4284868 |
| ENSG00000105825 | 2.0641493 | -0.9072504 | 9.110560 | 11.817407 | 0.0027726 | 0.2345097 | ENSG00000105825 | TFPI2 | tissue factor pathway inhibitor 2 | 7 | 93885396 | 93890753 | protein_coding | HGNC:11761 | 7.9985798 | 6.7850286 | 9.6738600 | 8.4513120 | 10.5448545 | 6.8849610 | 6.8849605 | 9.7926398 | 7.5158110 |
| ENSG00000063438 | -2.3407982 | 0.9096889 | 4.112743 | 11.234593 | 0.0027809 | 0.2345097 | ENSG00000063438 | AHRR | aryl hydrocarbon receptor repressor | 5 | 321714 | 438291 | protein_coding | HGNC:346 | 4.3119049 | 4.9712115 | 1.9194907 | -0.7749225 | 2.7585710 | 5.4792343 | 5.4792343 | 1.8920117 | 4.6788976 |
| ENSG00000163735 | 1.1511487 | -1.1803526 | 6.095099 | 11.740459 | 0.0028366 | 0.2376141 | ENSG00000163735 | CXCL5 | C-X-C motif chemokine ligand 5 | 4 | 73995642 | 73998677 | protein_coding | HGNC:10642 | 3.3677412 | 4.7888249 | 5.3896432 | 5.3725894 | 5.6104890 | 3.0692938 | 3.0692938 | 5.4617103 | 4.2466100 |
| ENSG00000122783 | 0.7934244 | 2.1329464 | 6.221925 | 11.708282 | 0.0028651 | 0.2383074 | ENSG00000122783 | CYREN | cell cycle regulator of NHEJ | 7 | 135092363 | 135170795 | protein_coding | HGNC:22432 | 5.5386043 | 4.9622027 | 6.0868128 | 5.4541140 | 6.6491635 | 7.6120587 | 7.6120587 | 6.1441555 | 5.2790002 |
| ENSG00000106089 | -1.8791262 | -1.9470278 | 4.569159 | 11.726251 | 0.0028828 | 0.2383074 | ENSG00000106089 | STX1A | syntaxin 1A | 7 | 73699206 | 73719672 | protein_coding | HGNC:11433 | 4.1264728 | 4.8276822 | 3.2915085 | 3.7597126 | 2.2892434 | 3.4682465 | 3.4682465 | 3.2339177 | 4.5192667 |
| ENSG00000163682 | 1.1961466 | -4.2965972 | 5.549563 | 11.595475 | 0.0029599 | 0.2400267 | ENSG00000163682 | RPL9 | ribosomal protein L9 | 4 | 39452587 | 39458931 | protein_coding | HGNC:10369 | 4.0282259 | 6.6436836 | 7.2676297 | 7.3614973 | 6.6842622 | 1.5113496 | 1.5113496 | 7.1340136 | 5.8617588 |
| ENSG00000129009 | 2.6959442 | 3.6796223 | 5.384763 | 11.596385 | 0.0029775 | 0.2400267 | ENSG00000129009 | ISLR | immunoglobulin superfamily containing leucine rich repeat | 15 | 74173710 | 74176872 | protein_coding | HGNC:6133 | 2.5537672 | -1.3867022 | 4.7653382 | 5.3135251 | 4.6918075 | 5.8785845 | 5.8785845 | 4.9512286 | 1.6448004 |
| ENSG00000196549 | 2.0537462 | 0.4838001 | 7.424784 | 11.563023 | 0.0029821 | 0.2400267 | ENSG00000196549 | MME | membrane metalloendopeptidase | 3 | 155024124 | 155183704 | protein_coding | HGNC:7154 | 5.6981785 | 4.5089983 | 6.6762119 | 7.6155252 | 7.4334616 | 5.0571078 | 5.0571080 | 7.2953528 | 5.2227961 |
| ENSG00000087245 | 1.1925727 | 0.6093603 | 10.549180 | 11.560654 | 0.0029833 | 0.2400267 | ENSG00000087245 | MMP2 | matrix metallopeptidase 2 | 16 | 55389700 | 55506691 | protein_coding | HGNC:7166 | 8.1854068 | 8.1976407 | 9.4331416 | 9.7625078 | 9.6229708 | 8.9982109 | 8.9982107 | 9.6124786 | 8.1915365 |
| ENSG00000198369 | 2.0582825 | 0.6731699 | 4.544290 | 11.581022 | 0.0030027 | 0.2400267 | ENSG00000198369 | SPRED2 | sprouty related EVH1 domain containing 2 | 2 | 65310851 | 65432637 | protein_coding | HGNC:17722 | 2.3304775 | 2.0638556 | 4.9831714 | 4.2975223 | 3.4332654 | 1.5084565 | 1.5084565 | 4.3714590 | 2.2033171 |
| ENSG00000071967 | 2.2031710 | 1.3126488 | 5.537696 | 11.541902 | 0.0030182 | 0.2400267 | ENSG00000071967 | CYBRD1 | cytochrome b reductase 1 | 2 | 171522247 | 171558129 | protein_coding | HGNC:20797 | 2.1709861 | 1.2663830 | 3.7799790 | 4.5029414 | 5.4055573 | 4.5461675 | 4.5461675 | 4.7151184 | 1.7884535 |
| ENSG00000169604 | 1.9793946 | 0.5102013 | 7.662923 | 11.410278 | 0.0031163 | 0.2462693 | ENSG00000169604 | ANTXR1 | ANTXR cell adhesion molecule 1 | 2 | 69013176 | 69249327 | protein_coding | HGNC:21014 | 4.9897997 | 3.5660365 | 6.1339877 | 6.1376796 | 6.7813719 | 4.8629497 | 4.8629497 | 6.3844999 | 4.4468570 |
| ENSG00000134363 | 1.1623133 | -0.7037321 | 5.218440 | 11.374820 | 0.0031605 | 0.2482018 | ENSG00000134363 | FST | follistatin | 5 | 53480626 | 53487134 | protein_coding | HGNC:3971 | 3.1581043 | 3.8515064 | 4.5562484 | 4.9826883 | 4.5792088 | 3.3744030 | 3.3744024 | 4.7197278 | 3.5460697 |
| ENSG00000196569 | 2.4203874 | 1.5480099 | 6.630777 | 11.289529 | 0.0032325 | 0.2512120 | ENSG00000196569 | LAMA2 | laminin subunit alpha 2 | 6 | 128883138 | 129516566 | protein_coding | HGNC:6482 | 2.6800207 | 0.2244133 | 3.7108680 | 3.8087180 | 4.2539149 | 3.0254316 | 3.0254316 | 3.9444387 | 1.9216180 |
| ENSG00000169136 | 1.6564296 | 0.2587789 | 5.163154 | 11.286821 | 0.0032497 | 0.2512120 | ENSG00000169136 | ATF5 | activating transcription factor 5 | 19 | 49928702 | 49933935 | protein_coding | HGNC:790 | 3.3344074 | 3.2757349 | 4.6902203 | 4.7188088 | 5.5117253 | 3.5688147 | 3.5688141 | 5.0264132 | 3.3053694 |
| ENSG00000163430 | 2.2998138 | 0.7132435 | 9.138148 | 11.256292 | 0.0032589 | 0.2512120 | ENSG00000163430 | FSTL1 | follistatin like 1 | 3 | 120392293 | 120451016 | protein_coding | HGNC:3972 | 6.7972363 | 3.7076507 | 8.2255258 | 8.3254150 | 8.6697285 | 6.7150520 | 6.7150520 | 8.4197193 | 5.9574777 |
| ENSG00000116962 | 2.4819172 | 0.5381991 | 7.416616 | 11.187075 | 0.0033272 | 0.2543081 | ENSG00000116962 | NID1 | nidogen 1 | 1 | 235975830 | 236065109 | protein_coding | HGNC:7821 | 3.6523804 | 1.7923640 | 5.2054776 | 5.3329218 | 6.1555789 | 3.6319367 | 3.6319367 | 5.6292763 | 3.0034128 |
| ENSG00000146221 | -1.6013825 | -1.0346362 | 6.841226 | 11.176677 | 0.0033395 | 0.2543081 | ENSG00000146221 | TCTE1 | t-complex-associated-testis-expressed 1 | 6 | 44278734 | 44297698 | protein_coding | HGNC:11693 | 6.2508478 | 5.4916663 | 4.2239208 | 4.4068164 | 4.7235861 | 4.9783748 | 4.9783746 | 4.4663896 | 5.9206287 |
| ENSG00000017427 | 3.7297585 | 3.0257552 | 5.109157 | 11.004979 | 0.0034122 | 0.2582760 | ENSG00000017427 | IGF1 | insulin like growth factor 1 | 12 | 102395874 | 102481744 | protein_coding | HGNC:5464 | 1.6419709 | -2.1736122 | 4.5949697 | 3.0800970 | 5.1163329 | 3.2709629 | 3.2709629 | 4.4878079 | 0.7409595 |
| ENSG00000007520 | -1.0819750 | 0.1652468 | 6.545569 | 11.045803 | 0.0034724 | 0.2603356 | ENSG00000007520 | TSR3 | TSR3 ribosome maturation factor | 16 | 1349240 | 1351878 | protein_coding | HGNC:14175 | 6.7705480 | 6.9633336 | 6.0482245 | 5.6210908 | 6.0006083 | 7.0911407 | 7.0911406 | 5.9022316 | 6.8701587 |
| ENSG00000204713 | 0.1291695 | -7.8352308 | 4.769956 | 11.036537 | 0.0034985 | 0.2603356 | ENSG00000204713 | TRIM27 | tripartite motif containing 27 | 6 | 28903002 | 28923988 | protein_coding | HGNC:9975 | 4.0497891 | 2.4479798 | 3.7818287 | 2.9635180 | 3.7768814 | -13.2877124 | -13.2877124 | 3.5550836 | 3.4606338 |
| ENSG00000165389 | 1.6035763 | 2.3949358 | 4.705384 | 11.061320 | 0.0035015 | 0.2603356 | ENSG00000165389 | SPTSSA | serine palmitoyltransferase small subunit A | 14 | 34432788 | 34462240 | protein_coding | HGNC:20361 | 1.6390941 | 1.8565523 | 3.8354263 | 3.4915481 | 2.9015535 | 4.2148703 | 4.2148703 | 3.4592131 | 1.7519166 |
| ENSG00000221970 | 6.8538796 | 0.0000000 | 3.149002 | 12.042041 | 0.0035450 | 0.2604132 | ENSG00000221970 | OR2A1 | olfactory receptor family 2 subfamily A member 1 | 7 | 144312419 | 144322737 | protein_coding | HGNC:8229 | -13.2877124 | -13.2877124 | 0.7130500 | 2.2782634 | 1.6793107 | -13.2877124 | -13.2877124 | 1.6919736 | -13.2877124 |
| ENSG00000172345 | 2.4981823 | 3.4906486 | 5.204681 | 10.986774 | 0.0035592 | 0.2604132 | ENSG00000172345 | STARD5 | StAR related lipid transfer domain containing 5 | 15 | 81309053 | 81324183 | protein_coding | HGNC:18065 | 0.9509596 | 1.2868622 | 2.5594115 | 4.1909091 | 3.8551650 | 4.0123508 | 4.0123508 | 3.6866918 | 1.1286649 |
| ENSG00000149527 | -7.1244954 | -7.1244954 | 3.062583 | 13.378358 | 0.0036007 | 0.2604132 | ENSG00000149527 | PLCH2 | phospholipase C eta 2 | 1 | 2425980 | 2505532 | protein_coding | HGNC:29037 | -13.2877124 | 2.8749529 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 1.8749728 |
| ENSG00000108691 | 1.4484606 | -0.3415178 | 8.143179 | 10.902453 | 0.0036192 | 0.2604132 | ENSG00000108691 | CCL2 | C-C motif chemokine ligand 2 | 17 | 34255274 | 34257208 | protein_coding | HGNC:10618 | 8.4272317 | 7.8793505 | 9.2424297 | 9.6331556 | 10.2703298 | 7.9033213 | 7.9033215 | 9.7785181 | 8.1791443 |
| ENSG00000144229 | -2.2782703 | -7.3979011 | 3.546598 | 10.466641 | 0.0036436 | 0.2604132 | ENSG00000144229 | THSD7B | thrombospondin type 1 domain containing 7B | 2 | 136765545 | 137677718 | protein_coding | HGNC:29348 | 2.9622656 | 2.7253104 | -2.5204052 | -0.1671958 | 0.4122276 | -13.2877124 | -13.2877124 | -0.3245725 | 2.8486474 |
| ENSG00000166147 | 2.3268991 | 0.8793650 | 8.682388 | 10.874919 | 0.0036492 | 0.2604132 | ENSG00000166147 | FBN1 | fibrillin 1 | 15 | 48408313 | 48645721 | protein_coding | HGNC:3603 | 3.9074852 | 2.1511435 | 5.6292580 | 5.7400446 | 6.0985790 | 4.3003478 | 4.3003478 | 5.8368487 | 3.2815484 |
| ENSG00000140807 | -2.3072208 | -1.1878397 | 4.561020 | 10.863759 | 0.0036527 | 0.2604132 | ENSG00000140807 | NKD1 | NKD inhibitor of WNT signaling pathway 1 | 16 | 50548396 | 50649249 | protein_coding | HGNC:17045 | 0.9627459 | 1.3638456 | -0.4122683 | -2.4944667 | -0.9157534 | 2.6544168 | 2.6544168 | -1.0400183 | 1.1771904 |
| ENSG00000115602 | 4.0583453 | 0.7845832 | 5.355486 | 10.800169 | 0.0036684 | 0.2604132 | ENSG00000115602 | IL1RL1 | interleukin 1 receptor like 1 | 2 | 102311502 | 102352037 | protein_coding | HGNC:5998 | 0.9986584 | -13.2877124 | 5.4229804 | 4.9652978 | 3.3244974 | 1.5441678 | 1.5441678 | 4.8100919 | -0.0012694 |
| ENSG00000286169 | -1.9117865 | -1.3703984 | 4.807855 | 10.850096 | 0.0037270 | 0.2615023 | ENSG00000286169 | NA | NA | NA | NA | NA | NA | NA | 2.5714708 | 4.0642573 | 0.8415578 | 1.4550355 | 1.2547156 | 1.6933344 | 1.6933344 | 1.2057716 | 3.5028968 |
| ENSG00000149212 | 1.4197260 | 0.6510070 | 6.338456 | 10.802860 | 0.0037323 | 0.2615023 | ENSG00000149212 | SESN3 | sestrin 3 | 11 | 95165513 | 95232541 | protein_coding | HGNC:23060 | 2.2100724 | 2.1359475 | 3.5480961 | 3.6543560 | 3.7953995 | 2.6999622 | 2.6999622 | 3.6695185 | 2.1734860 |
| ENSG00000168280 | -0.6873626 | -2.2185247 | 6.758797 | 10.784636 | 0.0037512 | 0.2615023 | ENSG00000168280 | KIF5C | kinesin family member 5C | 2 | 148875227 | 149026759 | protein_coding | HGNC:6325 | 4.6377707 | 4.2516058 | 4.1581635 | 3.7793914 | 3.7595447 | 2.6284442 | 2.6284442 | 3.9110126 | 4.4575704 |
| ENSG00000099974 | 2.8766175 | -6.1501444 | 5.219563 | 10.765321 | 0.0038048 | 0.2615023 | ENSG00000099974 | DDTL | D-dopachrome tautomerase like | 22 | 23966888 | 23972556 | protein_coding | HGNC:33446 | 3.5298584 | -13.2877124 | 5.5181954 | 6.2483967 | 4.6163734 | -13.2877124 | -13.2877124 | 5.6086336 | 2.5298709 |
| ENSG00000107249 | 2.0561338 | -0.3251892 | 4.489237 | 10.771431 | 0.0038081 | 0.2615023 | ENSG00000107249 | GLIS3 | GLIS family zinc finger 3 | 9 | 3824127 | 4348392 | protein_coding | HGNC:28510 | 0.2667122 | 0.4984429 | 3.6439015 | 2.5142809 | 4.4558522 | -0.2962366 | -0.2962366 | 3.7426891 | 0.3872247 |
| ENSG00000183214 | 6.9485427 | 8.5088741 | 4.107836 | 11.758127 | 0.0038128 | 0.2615023 | ENSG00000183214 | MICA | MHC class I polypeptide-related sequence A | HSCHR6_MHC_QBL_CTG1 | 2655411 | 2671966 | protein_coding | HGNC:7090 | -13.2877124 | -13.2877124 | 2.8813992 | 0.7262994 | 4.2268709 | 4.6330651 | 4.6330651 | 3.2093356 | -13.2877124 |
| ENSG00000054938 | 2.7416416 | 1.1006649 | 4.804052 | 10.735719 | 0.0038294 | 0.2615023 | ENSG00000054938 | CHRDL2 | chordin like 2 | 11 | 74696429 | 74731426 | protein_coding | HGNC:24168 | 2.6356200 | 0.7162420 | 5.3179336 | 4.1404935 | 5.0071367 | 3.0422591 | 3.0422591 | 4.9018260 | 1.9740370 |
| ENSG00000118971 | -0.4172238 | -1.5752034 | 7.871028 | 10.691370 | 0.0038572 | 0.2619771 | ENSG00000118971 | CCND2 | cyclin D2 | 12 | 4269771 | 4305353 | protein_coding | HGNC:1583 | 5.1949374 | 5.7178991 | 5.1012572 | 5.4088252 | 5.2260173 | 3.9415644 | 3.9415646 | 5.2509267 | 5.4799855 |
| ENSG00000112306 | 0.8596966 | -1.2625276 | 6.119184 | 10.649570 | 0.0039094 | 0.2631496 | ENSG00000112306 | RPS12 | ribosomal protein S12 | 6 | 132814569 | 132817564 | protein_coding | HGNC:10385 | 7.3314061 | 7.8915170 | 8.6824537 | 8.2147026 | 9.0404192 | 6.4565204 | 6.4565205 | 8.6847160 | 7.6384747 |
| ENSG00000115648 | 0.0792648 | 2.4755403 | 5.162186 | 10.684633 | 0.0039164 | 0.2631496 | ENSG00000115648 | MLPH | melanophilin | 2 | 237485428 | 237555322 | protein_coding | HGNC:29643 | 4.6952889 | 2.7147069 | 3.1533032 | 4.2166444 | 5.3076409 | 6.1142610 | 6.1142610 | 4.4831747 | 4.0211217 |
| ENSG00000100968 | 1.6866674 | 0.8715488 | 5.220277 | 10.635248 | 0.0039468 | 0.2637863 | ENSG00000100968 | NFATC4 | nuclear factor of activated T cells 4 | 14 | 24365673 | 24379604 | protein_coding | HGNC:7778 | 3.5319558 | 1.9552548 | 5.1550661 | 4.3467940 | 6.2036864 | 3.7855999 | 3.7855999 | 5.4338899 | 2.9490631 |
| ENSG00000206452 | 7.7335511 | 9.9010843 | 8.539787 | 9.717178 | 0.0040036 | 0.2651053 | ENSG00000206452 | HLA-C | major histocompatibility complex, class I, C | HSCHR6_MHC_QBL_CTG1 | 2524181 | 2527552 | protein_coding | HGNC:4933 | -13.2877124 | 0.8723954 | 9.2629431 | 7.0227320 | -13.2877124 | 10.1216506 | 10.1216506 | 7.9549605 | -0.1275258 |
| ENSG00000104067 | 1.4623362 | 0.2004469 | 5.414445 | 10.576407 | 0.0040088 | 0.2651053 | ENSG00000104067 | TJP1 | tight junction protein 1 | 15 | 29699367 | 29968915 | protein_coding | HGNC:11827 | 1.6293221 | 3.6180274 | 2.8273260 | 3.0725770 | 3.3776779 | 3.7563504 | 3.7563504 | 3.1101579 | 2.9422215 |
| ENSG00000151388 | 0.8775566 | -1.4405889 | 5.189965 | 10.544210 | 0.0040476 | 0.2653668 | ENSG00000151388 | ADAMTS12 | ADAM metallopeptidase with thrombospondin type 1 motif 12 | 5 | 33523535 | 33892019 | protein_coding | HGNC:14605 | 2.5597458 | 1.5045085 | 2.3924034 | 2.8317107 | 2.2187071 | 0.9234520 | 0.9234520 | 2.5045571 | 2.1265299 |
| ENSG00000137857 | -1.2989462 | -0.5864652 | 9.718098 | 10.527463 | 0.0040549 | 0.2653668 | ENSG00000137857 | DUOX1 | dual oxidase 1 | 15 | 45129933 | 45165576 | protein_coding | HGNC:3062 | 9.4621522 | 10.1917269 | 8.6133701 | 8.5703176 | 7.4787340 | 9.1081647 | 9.1081648 | 8.3070163 | 9.8725748 |
| ENSG00000005108 | -1.5088101 | -3.1604914 | 4.176576 | 10.527432 | 0.0040969 | 0.2662855 | ENSG00000005108 | THSD7A | thrombospondin type 1 domain containing 7A | 7 | 11370365 | 11832198 | protein_coding | HGNC:22207 | 3.3204343 | 1.7005596 | 0.7931792 | -0.3779524 | 0.3712176 | -1.7726976 | -1.7726976 | 0.3394647 | 2.7268225 |
| ENSG00000132854 | 3.6123104 | 4.8441321 | 3.645116 | 9.410010 | 0.0041196 | 0.2662855 | ENSG00000132854 | KANK4 | KN motif and ankyrin repeat domains 4 | 1 | 62236165 | 62319434 | protein_coding | HGNC:27263 | -0.2788339 | -13.2877124 | 2.2932186 | 1.6037025 | 0.1832807 | 2.4485767 | 2.4485767 | 1.5971211 | -1.2786588 |
| ENSG00000180822 | 1.3805305 | 0.2181207 | 8.730676 | 10.465894 | 0.0041326 | 0.2662855 | ENSG00000180822 | PSMG4 | proteasome assembly chaperone 4 | 6 | 3231403 | 3303373 | protein_coding | HGNC:21108 | 7.0359214 | 6.6068191 | 8.0078697 | 8.5325174 | 8.2239886 | 7.1466350 | 7.1466349 | 8.2709788 | 6.8372659 |
| ENSG00000160221 | 2.3848789 | 4.6334624 | 3.714567 | 9.743965 | 0.0041682 | 0.2672127 | ENSG00000160221 | GATD3 | glutamine amidotransferase class 1 domain containing 3 | 21 | 44133610 | 44210114 | protein_coding | HGNC:1273 | 0.5629101 | 0.9768512 | 1.2253786 | 3.9804858 | -0.4195303 | 5.1450429 | 5.1450429 | 2.6531268 | 0.7846757 |
| ENSG00000140285 | 1.7129737 | 0.2369533 | 4.973785 | 10.422847 | 0.0042191 | 0.2688391 | ENSG00000140285 | FGF7 | fibroblast growth factor 7 | 15 | 49423237 | 49488775 | protein_coding | HGNC:3685 | 3.5201011 | 3.4737892 | 5.2052571 | 4.8783178 | 5.9423366 | 4.7004757 | 4.7004758 | 5.4127436 | 3.4971307 |
| ENSG00000126353 | 2.1906257 | 2.2498180 | 5.270044 | 10.413920 | 0.0042364 | 0.2688391 | ENSG00000126353 | CCR7 | C-C motif chemokine receptor 7 | 17 | 40551081 | 40565472 | protein_coding | HGNC:1608 | 2.8183197 | 2.5613124 | 4.2484035 | 5.0962161 | 5.9482286 | 4.7194947 | 4.7194947 | 5.2599911 | 2.6955315 |
| ENSG00000176809 | -1.6572873 | 0.7828978 | 4.311925 | 10.270710 | 0.0043229 | 0.2728550 | ENSG00000176809 | LRRC37A3 | leucine rich repeat containing 37 member A3 | 17 | 64854130 | 64919480 | protein_coding | HGNC:32427 | 4.2912172 | 3.7372791 | 4.3040364 | 4.9821995 | -0.6583489 | 5.6146289 | 5.6146289 | 4.1153304 | 4.0406724 |
| ENSG00000143878 | 1.7832164 | 1.0732009 | 6.451645 | 10.308747 | 0.0043431 | 0.2728550 | ENSG00000143878 | RHOB | ras homolog family member B | 2 | 20447074 | 20449440 | protein_coding | HGNC:668 | 3.9305532 | 3.9419263 | 5.4940428 | 5.3837288 | 6.3991459 | 5.0721471 | 5.0721470 | 5.8347246 | 3.9362507 |
| ENSG00000083307 | -2.1583674 | 1.9762331 | 3.346575 | 8.770729 | 0.0043701 | 0.2731877 | ENSG00000083307 | GRHL2 | grainyhead like transcription factor 2 | 8 | 101492439 | 101669726 | protein_coding | HGNC:2799 | 0.8468150 | -0.3366226 | -13.2877124 | -1.3201583 | -0.7407601 | 2.4539892 | 2.4539892 | -1.5863843 | 0.3731860 |
| ENSG00000203734 | -2.5747541 | -0.1327286 | 3.705060 | 9.501048 | 0.0044624 | 0.2740682 | ENSG00000203734 | ECT2L | epithelial cell transforming 2 like | 6 | 138795911 | 138904070 | protein_coding | HGNC:21118 | 1.5557318 | 2.4932817 | -1.0574697 | -0.4410702 | 0.1384685 | 1.9932334 | 1.9932334 | -0.3722077 | 2.0993627 |
| ENSG00000197496 | 2.8469714 | 2.3781959 | 4.723482 | 10.199060 | 0.0044781 | 0.2740682 | ENSG00000197496 | SLC2A10 | solute carrier family 2 member 10 | 20 | 46709649 | 46736347 | protein_coding | HGNC:13444 | -0.0890064 | 0.4759751 | 2.4349991 | 2.7619575 | 3.9789887 | 2.6703312 | 2.6703312 | 3.2203024 | 0.2209663 |
| ENSG00000136960 | 1.2169962 | 0.7578669 | 6.749241 | 10.205827 | 0.0044825 | 0.2740682 | ENSG00000136960 | ENPP2 | ectonucleotide pyrophosphatase/phosphodiesterase 2 | 8 | 119557086 | 119673453 | protein_coding | HGNC:3357 | 4.3891989 | 4.7336158 | 5.9947889 | 5.9025151 | 5.5211222 | 5.2675567 | 5.2675568 | 5.8202625 | 4.5716610 |
| ENSG00000160613 | 1.6673173 | -0.7462617 | 8.688165 | 10.195528 | 0.0044952 | 0.2740682 | ENSG00000160613 | PCSK7 | proprotein convertase subtilisin/kexin type 7 | 11 | 117204337 | 117232525 | protein_coding | HGNC:8748 | 6.0473767 | 5.2736285 | 7.0627959 | 8.0431271 | 7.4066064 | 5.4131935 | 5.4131936 | 7.5625857 | 5.7117647 |
| ENSG00000198513 | 1.4396812 | 0.5159056 | 5.349903 | 10.206679 | 0.0044970 | 0.2740682 | ENSG00000198513 | ATL1 | atlastin GTPase 1 | 14 | 50532509 | 50634017 | protein_coding | HGNC:11231 | 2.7185666 | 3.4994470 | 4.7867772 | 4.3483885 | 4.6111148 | 3.5194511 | 3.5194511 | 4.5932081 | 3.1612071 |
| ENSG00000135047 | 1.2681201 | 0.8085593 | 6.546767 | 10.181444 | 0.0045177 | 0.2740682 | ENSG00000135047 | CTSL | cathepsin L | 9 | 87724051 | 87731469 | protein_coding | HGNC:2537 | 5.3018505 | 5.2234076 | 6.7881007 | 6.8398164 | 6.4072417 | 6.0655978 | 6.0655977 | 6.6908700 | 5.2631621 |
| ENSG00000138092 | 1.3471709 | 1.2213346 | 7.655206 | 10.166436 | 0.0045369 | 0.2740682 | ENSG00000138092 | CENPO | centromere protein O | 2 | 24793136 | 24822376 | protein_coding | HGNC:28152 | 4.7097178 | 5.8239262 | 6.6986204 | 7.5694419 | 7.8688801 | 7.3577655 | 7.3577655 | 7.4582666 | 5.3718146 |
| ENSG00000179409 | -1.3026620 | -1.3762843 | 6.112507 | 10.111835 | 0.0046248 | 0.2776625 | ENSG00000179409 | GEMIN4 | gem nuclear organelle associated protein 4 | 17 | 744421 | 753999 | protein_coding | HGNC:15717 | 4.8967176 | 5.0532191 | 4.0133209 | 3.5085566 | 2.9710491 | 3.2228988 | 3.2228988 | 3.5595114 | 4.9770894 |
| ENSG00000159216 | 1.4665141 | 0.9037273 | 5.814868 | 10.100954 | 0.0046406 | 0.2776625 | ENSG00000159216 | RUNX1 | RUNX family transcription factor 1 | 21 | 34787801 | 36004667 | protein_coding | HGNC:10471 | 2.7339675 | 2.2905155 | 4.5331755 | 4.5814906 | 4.1502005 | 3.5791915 | 3.5791915 | 4.4341092 | 2.5292133 |
| ENSG00000171408 | 2.0562576 | 1.9091267 | 4.921996 | 10.100643 | 0.0046786 | 0.2778876 | ENSG00000171408 | PDE7B | phosphodiesterase 7B | 6 | 135851701 | 136195574 | protein_coding | HGNC:8792 | 0.8029319 | 0.6627041 | 3.4219380 | 3.1632606 | 3.1692623 | 2.6995778 | 2.6995778 | 3.2566180 | 0.7345210 |
| ENSG00000137573 | 3.1472175 | -0.2527120 | 6.384342 | 10.057178 | 0.0047137 | 0.2778876 | ENSG00000137573 | SULF1 | sulfatase 1 | 8 | 69466624 | 69660915 | protein_coding | HGNC:20391 | 3.6577484 | 1.6620838 | 4.4664312 | 5.7504273 | 7.3656474 | 2.2874342 | 2.2874342 | 6.3271074 | 2.9805447 |
| ENSG00000231608 | -4.0188360 | 4.0029591 | 3.012370 | 11.243871 | 0.0047191 | 0.2778876 | ENSG00000231608 | TNXB | tenascin XB | HSCHR6_MHC_DBB_CTG1 | 3282563 | 3358976 | protein_coding | HGNC:11976 | -1.9383537 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 1.2509222 | 1.2509222 | -13.2877124 | -2.9378009 |
| ENSG00000137193 | 3.3442875 | 1.2597292 | 3.276980 | 9.277402 | 0.0047328 | 0.2778876 | ENSG00000137193 | PIM1 | Pim-1 proto-oncogene, serine/threonine kinase | 6 | 37170152 | 37175428 | protein_coding | HGNC:8986 | -0.7072489 | -1.6270925 | 2.6814488 | 3.6385936 | 3.7440611 | 0.3158711 | 0.3158711 | 3.4270946 | -1.0950697 |
| ENSG00000114770 | -1.6267142 | -0.0728753 | 4.847474 | 9.997452 | 0.0048478 | 0.2826486 | ENSG00000114770 | ABCC5 | ATP binding cassette subfamily C member 5 | 3 | 183919934 | 184017939 | protein_coding | HGNC:56 | 4.7635115 | 4.2925325 | 5.0244227 | 2.2244312 | 2.6021122 | 4.6796762 | 4.6796760 | 3.8510444 | 4.5471567 |
| ENSG00000183570 | -3.1948549 | 0.0515763 | 3.857212 | 8.880762 | 0.0049124 | 0.2826486 | ENSG00000183570 | PCBP3 | poly(rC) binding protein 3 | 21 | 45643694 | 45942454 | protein_coding | HGNC:8651 | 4.5587173 | 4.2285388 | -13.2877124 | 2.0988938 | -0.3470538 | 3.6333566 | 3.6333566 | 0.7570506 | 4.4030532 |
| ENSG00000225987 | -3.4308859 | -0.2500819 | 3.021062 | 8.358323 | 0.0049136 | 0.2826486 | ENSG00000225987 | PBX2 | PBX homeobox 2 | HSCHR6_MHC_APD_CTG1 | 3517335 | 3522785 | protein_coding | HGNC:8633 | 4.0185675 | 3.5367251 | 0.8096375 | -1.1830416 | 0.2997862 | 3.6135561 | 3.6135561 | 0.1907855 | 3.7976696 |
| ENSG00000107562 | 3.3048661 | 2.5909603 | 6.972949 | 9.892572 | 0.0049620 | 0.2826486 | ENSG00000107562 | CXCL12 | C-X-C motif chemokine ligand 12 | 10 | 44370165 | 44386493 | protein_coding | HGNC:10672 | 3.9076610 | 1.3140340 | 6.5629003 | 5.5934426 | 7.7385334 | 5.7695305 | 5.7695305 | 6.8923561 | 3.1288188 |
| ENSG00000214736 | 2.5866605 | 3.2779469 | 3.633122 | 9.509092 | 0.0049788 | 0.2826486 | ENSG00000214736 | TOMM6 | translocase of outer mitochondrial membrane 6 | 6 | 41787662 | 41789898 | protein_coding | HGNC:34528 | 1.7477539 | 3.0105407 | 5.3527056 | 5.1136446 | 5.5762948 | 5.9675146 | 5.9675146 | 5.3598683 | 2.5131137 |
| ENSG00000214278 | -3.2046576 | -1.2006137 | 3.198508 | 8.434265 | 0.0049998 | 0.2826486 | ENSG00000214278 | 5 | 403731 | 404546 | processed_pseudogene | 3.6351253 | 5.3031142 | 1.8752866 | 0.8968600 | 1.4796186 | 3.4952243 | 3.4952243 | 1.4715350 | 4.6978387 | |||
| ENSG00000241318 | 3.4677735 | 0.9652015 | 3.952056 | 9.497271 | 0.0050216 | 0.2826486 | ENSG00000241318 | WDR82P2 | 1 | 91534666 | 91535593 | processed_pseudogene | HGNC:33513 | 2.5144515 | -13.2877124 | 5.5977149 | 5.0807576 | 4.9038507 | 2.6360213 | 2.6360213 | 5.2250354 | 1.5144768 | |
| ENSG00000275832 | -0.9344770 | -8.8420061 | 5.202183 | 9.858661 | 0.0050271 | 0.2826486 | ENSG00000275832 | ARHGAP23 | Rho GTPase activating protein 23 | 17 | 38419280 | 38512385 | protein_coding | HGNC:29293 | 5.8245703 | 6.4817681 | 5.1062449 | 5.2996707 | 5.9221295 | -13.2877124 | -13.2877124 | 5.4861811 | 6.1902721 |
| ENSG00000187257 | -1.7997330 | 0.7991375 | 3.938251 | 9.588724 | 0.0050450 | 0.2826486 | ENSG00000187257 | RSBN1L | round spermatid basic protein 1 like | 7 | 77696459 | 77783022 | protein_coding | HGNC:24765 | 0.9550003 | 1.6782387 | 0.1477508 | -0.6274668 | -1.0479468 | 2.1994358 | 2.1994358 | -0.4222310 | 1.3614736 |
| ENSG00000011021 | -0.2878461 | -2.2763106 | 5.421997 | 9.801906 | 0.0051076 | 0.2826486 | ENSG00000011021 | CLCN6 | chloride voltage-gated channel 6 | 1 | 11806096 | 11848079 | protein_coding | HGNC:2024 | 2.8556122 | 3.6372032 | 2.7902664 | 3.1673045 | 3.2660817 | 2.4481369 | 2.4481369 | 3.0886810 | 3.2987020 |
| ENSG00000231345 | 3.8918545 | 0.4198586 | 5.548700 | 9.773259 | 0.0051398 | 0.2826486 | ENSG00000231345 | BEND3P1 | 10 | 50658529 | 50660472 | transcribed_processed_pseudogene | HGNC:45014 | 1.7173033 | -0.6620195 | 2.8832235 | 5.9343763 | 5.0119992 | 1.5034668 | 1.5034668 | 5.0703791 | 0.9709287 | |
| ENSG00000101955 | 2.6670914 | -4.6101222 | 3.633709 | 9.620459 | 0.0051405 | 0.2826486 | ENSG00000101955 | SRPX | sushi repeat containing protein X-linked | X | 38149336 | 38220924 | protein_coding | HGNC:11309 | 0.6226661 | 2.3311554 | 3.2658179 | 2.6293631 | 4.5193881 | -13.2877124 | -13.2877124 | 3.6907758 | 1.7162886 |
| ENSG00000171867 | 1.1091151 | 0.3288057 | 6.865774 | 9.773822 | 0.0051427 | 0.2826486 | ENSG00000171867 | PRNP | prion protein (Kanno blood group) | 20 | 4686350 | 4701590 | protein_coding | HGNC:9449 | 5.3843531 | 4.9543904 | 5.8381834 | 6.1372746 | 6.5504685 | 6.0968668 | 6.0968669 | 6.2050945 | 5.1853306 |
| ENSG00000007402 | -2.0439565 | -1.7045102 | 5.604015 | 9.788789 | 0.0051579 | 0.2826486 | ENSG00000007402 | CACNA2D2 | calcium voltage-gated channel auxiliary subunit alpha2delta 2 | 3 | 50362613 | 50504244 | protein_coding | HGNC:1400 | 4.0253141 | 4.3721045 | 2.7074667 | 1.1331742 | 2.8477755 | 2.8130777 | 2.8130777 | 2.4081719 | 4.2091044 |
| ENSG00000070047 | -6.9941753 | -6.9941753 | 2.966571 | 11.766570 | 0.0051834 | 0.2826486 | ENSG00000070047 | PHRF1 | PHD and ring finger domains 1 | 11 | 576470 | 612222 | protein_coding | HGNC:24351 | -1.0311941 | 2.4750026 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 1.5966938 |
| ENSG00000189212 | -2.5758588 | -0.4730786 | 3.473711 | 8.921180 | 0.0051956 | 0.2826486 | ENSG00000189212 | DPY19L2P1 | 7 | 35081590 | 35186041 | transcribed_unprocessed_pseudogene | HGNC:22305 | 1.8265900 | 2.2712180 | -0.2333641 | -0.7456599 | -0.2937886 | 1.6529008 | 1.6529008 | -0.4068528 | 2.0659655 | |
| ENSG00000214595 | -1.6068330 | -1.6122165 | 5.271833 | 9.761750 | 0.0052049 | 0.2826486 | ENSG00000214595 | EML6 | EMAP like 6 | 2 | 54723499 | 54972025 | protein_coding | HGNC:35412 | 2.8276357 | 4.6663424 | 3.6660815 | 2.8884111 | 2.2829133 | 2.3580606 | 2.3580606 | 3.0568842 | 4.0220040 |
| ENSG00000137507 | 3.1294418 | 0.5661376 | 7.072341 | 9.726752 | 0.0052274 | 0.2826486 | ENSG00000137507 | LRRC32 | leucine rich repeat containing 32 | 11 | 76657524 | 76670747 | protein_coding | HGNC:4161 | 3.3776110 | 0.9857547 | 5.3992240 | 5.3335751 | 6.7945988 | 3.2432531 | 3.2432531 | 6.0115244 | 2.6292235 |
| ENSG00000087116 | 2.0162243 | 0.9663607 | 5.268514 | 9.733372 | 0.0052413 | 0.2826486 | ENSG00000087116 | ADAMTS2 | ADAM metallopeptidase with thrombospondin type 1 motif 2 | 5 | 179110853 | 179345461 | protein_coding | HGNC:218 | 1.9140417 | 0.6144601 | 2.9046504 | 3.4823355 | 3.6351268 | 1.9497605 | 1.9497605 | 3.3733691 | 1.4058889 |
| ENSG00000064042 | 2.0054393 | 1.7021433 | 4.722979 | 9.703957 | 0.0053142 | 0.2853535 | ENSG00000064042 | LIMCH1 | LIM and calponin homology domains 1 | 4 | 41359607 | 41700044 | protein_coding | HGNC:29191 | 2.5177121 | 1.9427997 | 3.2068585 | 3.1108805 | 5.9063097 | 2.5116080 | 2.5116080 | 4.6976316 | 2.2587061 |
| ENSG00000162496 | 2.2679677 | -0.2355091 | 4.049226 | 9.630582 | 0.0053919 | 0.2860732 | ENSG00000162496 | DHRS3 | dehydrogenase/reductase 3 | 1 | 12567909 | 12620133 | protein_coding | HGNC:17693 | 1.2122331 | 1.2924072 | 2.8250417 | 3.9055695 | 4.1849209 | 1.7719726 | 1.7719726 | 3.7463375 | 1.2528770 |
| ENSG00000010278 | -1.5966739 | -0.0923921 | 5.807647 | 9.637314 | 0.0054045 | 0.2860732 | ENSG00000010278 | CD9 | CD9 molecule | 12 | 6199715 | 6238271 | protein_coding | HGNC:1709 | 5.9185027 | 6.5923515 | 5.0018523 | 5.3295933 | 3.7230593 | 6.2484980 | 6.2484980 | 4.8322085 | 6.2944169 |
| ENSG00000166741 | 2.6424006 | 1.9572968 | 6.048413 | 9.629555 | 0.0054110 | 0.2860732 | ENSG00000166741 | NNMT | nicotinamide N-methyltransferase | 11 | 114257787 | 114313536 | protein_coding | HGNC:7861 | 4.3591048 | 2.8854820 | 6.3734695 | 6.5979569 | 7.4489880 | 5.3943115 | 5.3943114 | 6.8847154 | 3.8027929 |
| ENSG00000090376 | 4.8593300 | 4.1530647 | 3.507042 | 9.020590 | 0.0054286 | 0.2860732 | ENSG00000090376 | IRAK3 | interleukin 1 receptor associated kinase 3 | 12 | 66189195 | 66254622 | protein_coding | HGNC:17020 | -3.4941416 | -13.2877124 | 0.2109910 | 1.5767620 | 2.2115390 | 0.1112050 | 0.1112050 | 1.5479714 | -4.4925169 |
| ENSG00000231834 | -6.0967958 | 0.4295205 | 5.376152 | 8.137820 | 0.0054414 | 0.2860732 | ENSG00000231834 | HLA-A | major histocompatibility complex, class I, A | HSCHR6_MHC_MANN_CTG1 | 1195801 | 1200442 | protein_coding | HGNC:4931 | -13.2877124 | 7.5483690 | -13.2877124 | -13.2877124 | 1.0954829 | 6.9690660 | 6.9690660 | -0.4893445 | 6.5483697 |
| ENSG00000049323 | 1.4450369 | -0.2693686 | 7.145673 | 9.495686 | 0.0056306 | 0.2911715 | ENSG00000049323 | LTBP1 | latent transforming growth factor beta binding protein 1 | 2 | 32946953 | 33399509 | protein_coding | HGNC:6714 | 4.0465657 | 4.4618785 | 5.2183780 | 5.2803011 | 5.5320653 | 3.5108365 | 3.5108366 | 5.3500714 | 4.2691155 |
| ENSG00000008394 | 1.6830474 | -2.1381924 | 4.420224 | 9.518573 | 0.0056477 | 0.2911715 | ENSG00000008394 | MGST1 | microsomal glutathione S-transferase 1 | 12 | 16347142 | 16609259 | protein_coding | HGNC:7061 | 4.4172208 | 2.9211621 | 5.7550334 | 6.0545769 | 6.1246528 | 1.6427358 | 1.6427358 | 5.9867799 | 3.8550032 |
| ENSG00000159403 | 2.0479293 | 0.9614136 | 7.526305 | 9.464721 | 0.0056884 | 0.2911715 | ENSG00000159403 | C1R | complement C1r | 12 | 7080214 | 7092540 | protein_coding | HGNC:1246 | 5.6062427 | 3.7919230 | 6.8310834 | 7.2159383 | 8.0678481 | 6.5646941 | 6.5646941 | 7.4672007 | 4.9672678 |
| ENSG00000134853 | 2.0425537 | 1.5172357 | 6.741390 | 9.453922 | 0.0057120 | 0.2911715 | ENSG00000134853 | PDGFRA | platelet derived growth factor receptor alpha | 4 | 54229280 | 54298245 | protein_coding | HGNC:8803 | 2.8195347 | 1.7958754 | 5.3828009 | 5.2651845 | 6.1325460 | 4.0133794 | 4.0133794 | 5.6471191 | 2.3966538 |
| ENSG00000135835 | -0.9639906 | -0.2739923 | 8.952255 | 9.433691 | 0.0057460 | 0.2911715 | ENSG00000135835 | KIAA1614 | KIAA1614 | 1 | 180912897 | 180951614 | protein_coding | HGNC:29327 | 6.5969273 | 6.7144483 | 5.2193033 | 6.3706510 | 5.9843482 | 6.6246488 | 6.6246488 | 5.9331855 | 6.6568842 |
| ENSG00000125730 | 1.8369782 | 0.6747547 | 8.454262 | 9.419329 | 0.0057734 | 0.2911715 | ENSG00000125730 | C3 | complement C3 | 19 | 6677704 | 6730562 | protein_coding | HGNC:1318 | 6.4468885 | 6.0564216 | 6.8090023 | 7.4962931 | 7.7407966 | 6.6314155 | 6.6314156 | 7.3996934 | 6.2648250 |
| ENSG00000236881 | -10.0429572 | -10.0429572 | 5.568992 | 11.286069 | 0.0057871 | 0.2911715 | ENSG00000236881 | HSCHR6_MHC_SSTO_CTG1 | 1029240 | 1030230 | unprocessed_pseudogene | 1.7180889 | 8.5043045 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 7.5173166 | |||
| ENSG00000026025 | 1.1274195 | 0.3943130 | 8.821839 | 9.396190 | 0.0058177 | 0.2911715 | ENSG00000026025 | VIM | vimentin | 10 | 17228241 | 17237593 | protein_coding | HGNC:12692 | 7.5306969 | 7.2353373 | 8.2181658 | 9.0129395 | 8.7377944 | 7.9634218 | 7.9634221 | 8.6926940 | 7.3905628 |
| ENSG00000273873 | 0.0000000 | 7.7396701 | 2.674795 | 12.931281 | 0.0058191 | 0.2911715 | ENSG00000273873 | BDP1 | B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB | HSCHR5_2_CTG1_1 | 1454100 | 1566305 | protein_coding | HGNC:13652 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 1.2187217 | 1.2187217 | -13.2877124 | -13.2877124 |
| ENSG00000189051 | -2.5905373 | -2.5158061 | 3.438608 | 8.752428 | 0.0058552 | 0.2911715 | ENSG00000189051 | RNF222 | ring finger protein 222 | 17 | 8390702 | 8397827 | protein_coding | HGNC:34517 | 2.6362940 | 2.9088517 | 0.6327624 | -1.3363293 | 0.8282367 | 0.2672505 | 0.2672505 | 0.3111439 | 2.7789997 |
| ENSG00000274305 | -1.2704818 | -1.4322470 | 5.404873 | 9.381856 | 0.0058772 | 0.2911715 | ENSG00000274305 | LENG8 | leukocyte receptor cluster member 8 | HSCHR19LRC_PGF1_CTG3_1 | 353405 | 366704 | protein_coding | HGNC:15500 | 3.6330207 | 4.2559114 | 3.0241257 | 2.4436016 | 2.8585060 | 2.5761329 | 2.5761329 | 2.7954571 | 3.9778252 |
| ENSG00000122877 | 1.5928260 | 1.2872950 | 5.365371 | 9.375204 | 0.0058846 | 0.2911715 | ENSG00000122877 | EGR2 | early growth response 2 | 10 | 62811996 | 62819167 | protein_coding | HGNC:3239 | 2.7898133 | 3.5734454 | 4.2532142 | 4.1708131 | 4.3453876 | 3.8970000 | 3.8970000 | 4.2582353 | 3.2341938 |
| ENSG00000150337 | -2.5384139 | -0.9048985 | 3.530401 | 8.724087 | 0.0059021 | 0.2911715 | ENSG00000150337 | FCGR1A | Fc gamma receptor Ia | 1 | 149782671 | 149791675 | protein_coding | HGNC:3613 | 3.0353887 | 3.1826905 | 0.0337352 | 2.2265427 | 0.6436872 | 4.4175403 | 4.4175403 | 1.2762161 | 3.1109188 |
| ENSG00000105372 | 1.0543832 | 0.5560870 | 8.289872 | 9.350753 | 0.0059064 | 0.2911715 | ENSG00000105372 | RPS19 | ribosomal protein S19 | 19 | 41860255 | 41872925 | protein_coding | HGNC:10402 | 9.0479756 | 9.2990457 | 10.2605948 | 10.1399068 | 10.4972507 | 9.7519786 | 9.7519786 | 10.3069728 | 9.1789656 |
| ENSG00000166428 | -0.8690380 | -1.2158256 | 7.121262 | 9.350903 | 0.0059074 | 0.2911715 | ENSG00000166428 | PLD4 | phospholipase D family member 4 | 14 | 104924713 | 104937761 | protein_coding | HGNC:23792 | 6.0093093 | 6.0842844 | 5.1074203 | 4.9221171 | 4.8355349 | 4.8773248 | 4.8773246 | 4.9595263 | 6.0472838 |
| ENSG00000064270 | -1.6391371 | -0.4563799 | 4.884922 | 9.383281 | 0.0059138 | 0.2911715 | ENSG00000064270 | ATP2C2 | ATPase secretory pathway Ca2+ transporting 2 | 16 | 84368527 | 84464187 | protein_coding | HGNC:29103 | 4.7444694 | 5.5783051 | 2.6926269 | 3.4967131 | 3.9636836 | 4.4532550 | 4.4532548 | 3.4748734 | 5.2208086 |
| ENSG00000109790 | 1.6920350 | -0.2936910 | 4.398770 | 9.371263 | 0.0059323 | 0.2911715 | ENSG00000109790 | KLHL5 | kelch like family member 5 | 4 | 39045039 | 39126857 | protein_coding | HGNC:6356 | 2.1788851 | 2.0528356 | 3.4226439 | 3.1468616 | 4.5369231 | 1.5459639 | 1.5459639 | 3.8343849 | 2.1172366 |
| ENSG00000243742 | -1.4050330 | 0.4053536 | 5.384324 | 9.312679 | 0.0060353 | 0.2949198 | ENSG00000243742 | RPLP0P2 | 11 | 61636680 | 61637640 | transcribed_processed_pseudogene | HGNC:17960 | 6.2776059 | 5.6782799 | 4.5257445 | 5.2387442 | 4.4351461 | 6.7502591 | 6.7502591 | 4.7800733 | 6.0088432 | |
| ENSG00000168542 | 2.5378410 | 1.5437305 | 12.821132 | 9.275814 | 0.0060557 | 0.2949198 | ENSG00000168542 | COL3A1 | collagen type III alpha 1 chain | 2 | 188974373 | 189012746 | protein_coding | HGNC:2201 | 9.1601471 | 7.1359891 | 10.9735484 | 10.9789479 | 11.5904598 | 10.1716370 | 10.1716371 | 11.2112501 | 8.4772758 |
| ENSG00000206376 | 6.4116319 | 8.6549656 | 3.938155 | 9.978848 | 0.0062123 | 0.3013792 | ENSG00000206376 | EHMT2 | euchromatic histone lysine methyltransferase 2 | HSCHR6_MHC_QBL_CTG1 | 3135732 | 3153671 | protein_coding | HGNC:14129 | -13.2877124 | -13.2877124 | 0.0941077 | 2.7639803 | -13.2877124 | 3.6820648 | 3.6820648 | 1.3896004 | -13.2877124 |
| ENSG00000183054 | 1.9218175 | -0.2896590 | 4.463314 | 9.199945 | 0.0062762 | 0.3018090 | ENSG00000183054 | RGPD6 | RANBP2 like and GRIP domain containing 6 | 2 | 110513802 | 110610840 | protein_coding | HGNC:32419 | 4.1325601 | 4.0514663 | 4.8745600 | 3.2129143 | 3.7344957 | 2.1814292 | 2.1814292 | 4.1131983 | 4.0925829 |
| ENSG00000105640 | 1.0210544 | -0.0807569 | 6.860648 | 9.164324 | 0.0062885 | 0.3018090 | ENSG00000105640 | RPL18A | ribosomal protein L18a | 19 | 17859910 | 17864153 | protein_coding | HGNC:10311 | 7.2756582 | 7.9604583 | 8.8004211 | 8.7155494 | 9.2386992 | 7.5655814 | 7.5655812 | 8.9369862 | 7.6583143 |
| ENSG00000089157 | 1.2616479 | 0.5131805 | 8.617190 | 9.161382 | 0.0062932 | 0.3018090 | ENSG00000089157 | RPLP0 | ribosomal protein lateral stalk subunit P0 | 12 | 120196699 | 120201235 | protein_coding | HGNC:10371 | 8.0525124 | 7.8014259 | 9.0468062 | 9.1607665 | 9.6946134 | 8.5184230 | 8.5184230 | 9.3293369 | 7.9324244 |
| ENSG00000038427 | 2.8411118 | 1.4412898 | 8.698859 | 9.083243 | 0.0064621 | 0.3087332 | ENSG00000038427 | VCAN | versican | 5 | 83471618 | 83582303 | protein_coding | HGNC:2464 | 4.7095984 | 2.4604047 | 6.5941875 | 6.7369823 | 7.0556049 | 6.0771500 | 6.0771500 | 6.8087001 | 3.9850131 |
| ENSG00000204967 | -0.3337650 | 1.6168295 | 4.910004 | 9.093268 | 0.0065151 | 0.3100827 | ENSG00000204967 | PCDHA4 | protocadherin alpha 4 | 5 | 140807037 | 141012347 | protein_coding | HGNC:8670 | 2.1498495 | 2.3376843 | 1.9172457 | 0.4329680 | 3.0005606 | 4.1570367 | 4.1570364 | 2.1298468 | 2.2468215 |
| ENSG00000112210 | 1.4214326 | 0.7247883 | 7.501275 | 9.047754 | 0.0065409 | 0.3101359 | ENSG00000112210 | RAB23 | RAB23, member RAS oncogene family | 6 | 57186992 | 57222307 | protein_coding | HGNC:14263 | 4.4819156 | 3.7302072 | 5.4842747 | 5.7732801 | 5.8651029 | 4.9710144 | 4.9710142 | 5.7164798 | 4.1544763 |
| ENSG00000153071 | 1.6245573 | 0.7776533 | 6.322927 | 9.029384 | 0.0065869 | 0.3106885 | ENSG00000153071 | DAB2 | DAB adaptor protein 2 | 5 | 39371675 | 39462300 | protein_coding | HGNC:2662 | 4.9533564 | 2.5544184 | 5.1588672 | 4.9677232 | 4.5344704 | 5.3642087 | 5.3642086 | 4.9099607 | 4.2038378 |
| ENSG00000068305 | -1.0850677 | -1.5231686 | 5.667997 | 9.001657 | 0.0066637 | 0.3106885 | ENSG00000068305 | MEF2A | myocyte enhancer factor 2A | 15 | 99565417 | 99716488 | protein_coding | HGNC:6993 | 4.9617242 | 3.9741766 | 3.9363521 | 2.6483532 | 4.0770967 | 3.3789359 | 3.3789360 | 3.6802219 | 4.5508496 |
| ENSG00000240661 | 1.3130801 | -1.2649210 | 5.605540 | 8.996306 | 0.0066675 | 0.3106885 | ENSG00000240661 | BTNL12P | 3 | 120357754 | 120367874 | transcribed_unitary_pseudogene | HGNC:52935 | 5.5343702 | 3.9763997 | 6.3885041 | 6.6940881 | 6.0826224 | 4.0417551 | 4.0417546 | 6.4099206 | 4.9562031 | |
| ENSG00000126709 | -2.2107786 | -2.7680819 | 6.847280 | 8.991995 | 0.0066744 | 0.3106885 | ENSG00000126709 | IFI6 | interferon alpha inducible protein 6 | 1 | 27666064 | 27672212 | protein_coding | HGNC:4054 | 6.6129959 | 9.5964569 | 6.9512028 | 6.4606735 | 6.2408461 | 5.9654819 | 5.9654819 | 6.5821878 | 8.7682289 |
| ENSG00000231852 | 1.8247205 | 4.1374550 | 3.711932 | 8.656910 | 0.0066762 | 0.3106885 | ENSG00000231852 | CYP21A2 | cytochrome P450 family 21 subfamily A member 2 | 6 | 32038327 | 32041644 | protein_coding | HGNC:2600 | 1.1824438 | -13.2877124 | 1.4577246 | 2.8665694 | 1.9769061 | 4.5091127 | 4.5091127 | 2.2199705 | 0.1825080 |
| ENSG00000274779 | -1.4350193 | 0.6046036 | 6.051681 | 8.973732 | 0.0067351 | 0.3122761 | ENSG00000274779 | NOMO1 | NODAL modulator 1 | HSCHR16_1_CTG1 | 890754 | 953160 | protein_coding | HGNC:30060 | 4.4458145 | 6.3260953 | 5.7780008 | 5.6316141 | 5.5691843 | 6.5913941 | 6.5913941 | 5.6622767 | 5.6727752 |
| ENSG00000269343 | -2.1530323 | -0.3922967 | 4.443605 | 8.919230 | 0.0067709 | 0.3127823 | ENSG00000269343 | ZNF587B | zinc finger protein 587B | 19 | 57819721 | 57846238 | protein_coding | HGNC:37142 | 2.4230115 | 4.0686460 | 1.9536843 | 1.5208004 | 0.9989363 | 3.0387175 | 3.0387175 | 1.5429434 | 3.4687531 |
| ENSG00000069424 | -1.7575585 | -1.4702178 | 4.327557 | 8.947184 | 0.0068098 | 0.3134271 | ENSG00000069424 | KCNAB2 | potassium voltage-gated channel subfamily A regulatory beta subunit 2 | 1 | 5990927 | 6101193 | protein_coding | HGNC:6229 | 3.8031706 | 3.5343986 | 1.8199620 | 4.2473973 | 2.1227608 | 3.3472949 | 3.3472949 | 3.1634453 | 3.6750345 |
| ENSG00000267645 | -6.4098180 | 0.8783934 | 3.182076 | 10.621695 | 0.0068981 | 0.3142581 | ENSG00000267645 | POLR2J2-UPK3BL1 readthrough | 7 | 102637049 | 102671641 | protein_coding | 3.7711223 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 3.7999683 | 3.7999683 | -13.2877124 | 2.7711330 | ||
| ENSG00000152661 | 1.4525217 | 0.6511305 | 6.264219 | 8.891837 | 0.0069042 | 0.3142581 | ENSG00000152661 | GJA1 | gap junction protein alpha 1 | 6 | 121435595 | 121449727 | protein_coding | HGNC:4274 | 3.6370637 | 3.5885662 | 4.7743594 | 5.0406278 | 5.6048357 | 4.3278449 | 4.3278447 | 5.1825151 | 3.6130188 |
| ENSG00000115271 | -2.3842192 | -2.1730207 | 3.799471 | 8.642279 | 0.0069191 | 0.3142581 | ENSG00000115271 | GCA | grancalcin | 2 | 162318840 | 162371595 | protein_coding | HGNC:15990 | 2.9821275 | 5.4576733 | 3.4383433 | 2.5433533 | 1.1365806 | 3.8003805 | 3.8003805 | 2.6529373 | 4.6962140 |
| ENSG00000187955 | 2.9438775 | 1.6645057 | 7.947268 | 8.880325 | 0.0069279 | 0.3142581 | ENSG00000187955 | COL14A1 | collagen type XIV alpha 1 chain | 8 | 120059780 | 120373573 | protein_coding | HGNC:2191 | 3.6205839 | 0.7084248 | 5.4391153 | 6.4113648 | 6.0628345 | 4.5820899 | 4.5820899 | 6.0249558 | 2.8005374 |
| ENSG00000206505 | -4.6865491 | -6.7568771 | 7.742670 | 8.886620 | 0.0069580 | 0.3144858 | ENSG00000206505 | HLA-A | major histocompatibility complex, class I, A | HSCHR6_MHC_QBL_CTG1 | 1196218 | 1264879 | protein_coding | HGNC:4931 | 2.0688654 | 9.8636792 | -2.4096691 | 1.4288386 | 4.4985148 | -0.0382019 | -0.0382019 | 3.0865932 | 8.8701614 |
| ENSG00000127124 | 0.2310142 | -2.6928390 | 4.853986 | 8.867762 | 0.0069870 | 0.3146658 | ENSG00000127124 | HIVEP3 | HIVEP zinc finger 3 | 1 | 41506365 | 42035925 | protein_coding | HGNC:13561 | 1.6944599 | 2.4480327 | 0.9143403 | 1.5388565 | 1.7437515 | -0.1096342 | -0.1096342 | 1.4399592 | 2.1198993 |
| ENSG00000233948 | 3.4909216 | 7.4419138 | 2.620577 | 7.859173 | 0.0070382 | 0.3150361 | ENSG00000233948 | TRIM27 | tripartite motif containing 27 | HSCHR6_MHC_MCF_CTG1 | 168757 | 189744 | protein_coding | HGNC:9975 | -13.2877124 | -13.2877124 | -13.2877124 | -0.4926204 | -13.2877124 | 4.6350946 | 4.6350946 | -2.0771768 | -13.2877124 |
| ENSG00000145113 | 3.1354496 | 5.6144008 | 2.804079 | 8.244339 | 0.0070837 | 0.3150361 | ENSG00000145113 | MUC4 | mucin 4, cell surface associated | 3 | 195746765 | 195811973 | protein_coding | HGNC:7514 | -1.4992918 | -13.2877124 | 0.4786188 | 1.3087808 | 0.6727919 | 2.4232062 | 2.4232062 | 0.8652286 | -2.4988840 |
| ENSG00000176788 | 0.8442757 | -0.8542313 | 7.211782 | 8.801667 | 0.0071174 | 0.3150361 | ENSG00000176788 | BASP1 | brain abundant membrane attached signal protein 1 | 5 | 17065598 | 17276843 | protein_coding | HGNC:957 | 6.0517650 | 6.1244867 | 6.6644343 | 6.7642978 | 7.4919873 | 5.2884494 | 5.2884494 | 7.0229599 | 6.0885841 |
| ENSG00000162068 | -3.7619565 | -1.1150322 | 2.908693 | 7.631549 | 0.0071223 | 0.3150361 | ENSG00000162068 | NTN3 | netrin 3 | 16 | 2471297 | 2474145 | protein_coding | HGNC:8030 | 2.2577626 | 2.9660995 | -0.8100477 | -0.7805322 | -13.2877124 | 1.5593592 | 1.5593592 | -1.3800518 | 2.6549737 |
| ENSG00000157227 | 1.4976029 | 1.1306270 | 9.008907 | 8.793395 | 0.0071370 | 0.3150361 | ENSG00000157227 | MMP14 | matrix metallopeptidase 14 | 14 | 22836560 | 22849041 | protein_coding | HGNC:7160 | 8.0086166 | 7.5620529 | 8.8410617 | 9.5892213 | 9.7481994 | 9.0448361 | 9.0448362 | 9.4435408 | 7.8025448 |
| ENSG00000011465 | 2.3917382 | 1.9241638 | 9.049624 | 8.783495 | 0.0071617 | 0.3150361 | ENSG00000011465 | DCN | decorin | 12 | 91140484 | 91183217 | protein_coding | HGNC:2705 | 7.2471987 | 5.1797891 | 8.7405021 | 8.8721524 | 9.4110514 | 8.6884179 | 8.6884179 | 9.0380751 | 6.5558945 |
| ENSG00000168497 | -4.7928719 | 2.6965445 | 2.790227 | 10.221245 | 0.0071849 | 0.3150361 | ENSG00000168497 | CAVIN2 | caveolae associated protein 2 | 2 | 191834310 | 191847088 | protein_coding | HGNC:10690 | -0.3173997 | 0.4993229 | -13.2877124 | -13.2877124 | -13.2877124 | 2.9278320 | 2.9278320 | -13.2877124 | 0.1479995 |
| ENSG00000198053 | 1.2029250 | -0.6060259 | 5.159176 | 8.779691 | 0.0071958 | 0.3150361 | ENSG00000198053 | SIRPA | signal regulatory protein alpha | 20 | 1894167 | 1940592 | protein_coding | HGNC:9662 | 1.8143367 | 2.8643583 | 3.5732702 | 3.6791247 | 3.8947781 | 1.8649710 | 1.8649710 | 3.7219950 | 2.4328389 |
| ENSG00000127241 | 2.6386687 | 1.9710233 | 8.270414 | 8.754858 | 0.0072340 | 0.3156105 | ENSG00000127241 | MASP1 | MBL associated serine protease 1 | 3 | 187217282 | 187291980 | protein_coding | HGNC:6901 | 5.9903845 | 3.8662873 | 7.5566542 | 7.7265656 | 7.8909737 | 7.3788332 | 7.3788332 | 7.7311765 | 5.2883324 |
| ENSG00000028277 | -0.4536936 | -2.8384879 | 4.632106 | 8.757658 | 0.0072808 | 0.3165492 | ENSG00000028277 | POU2F2 | POU class 2 homeobox 2 | 19 | 42086110 | 42196585 | protein_coding | HGNC:9213 | 2.4169319 | 3.5445655 | 4.6460360 | 1.8400523 | 1.6469557 | -0.7198466 | -0.7198466 | 3.4037110 | 3.0882256 |
| ENSG00000145734 | -0.5959134 | -7.5172364 | 4.125774 | 8.759797 | 0.0073103 | 0.3167356 | ENSG00000145734 | BDP1 | B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB | 5 | 71455651 | 71567820 | protein_coding | HGNC:13652 | 1.8917547 | 2.1823993 | 0.7751719 | 0.1641684 | 0.7239875 | -13.2877124 | -13.2877124 | 0.5797131 | 2.0443840 |
| ENSG00000090054 | 1.7696176 | 0.9256671 | 5.011911 | 8.703867 | 0.0074114 | 0.3178411 | ENSG00000090054 | SPTLC1 | serine palmitoyltransferase long chain base subunit 1 | 9 | 92000087 | 92115413 | protein_coding | HGNC:11277 | 2.7302737 | 3.9640928 | 5.1391956 | 4.3994215 | 4.6489444 | 3.7729060 | 3.7729055 | 4.7625843 | 3.4752470 |
| ENSG00000105379 | 2.3316142 | 1.4359784 | 4.117241 | 8.644349 | 0.0074956 | 0.3178411 | ENSG00000105379 | ETFB | electron transfer flavoprotein subunit beta | 19 | 51345169 | 51366388 | protein_coding | HGNC:3482 | 0.5815479 | 1.6996431 | 5.5321106 | 4.2384646 | 5.3877518 | 4.6732668 | 4.6732670 | 5.1567263 | 1.2463047 |
| ENSG00000143341 | 1.7597773 | 0.9560991 | 6.553141 | 8.654642 | 0.0074957 | 0.3178411 | ENSG00000143341 | HMCN1 | hemicentin 1 | 1 | 185734391 | 186190949 | protein_coding | HGNC:19194 | 1.3239482 | 0.3793348 | 3.0275469 | 3.4951952 | 2.9888117 | 3.0499149 | 3.0499149 | 3.1894825 | 0.9276105 |
| ENSG00000155463 | 1.1497424 | 1.6644536 | 5.260553 | 8.650169 | 0.0075376 | 0.3178411 | ENSG00000155463 | OXA1L | OXA1L mitochondrial inner membrane protein | 14 | 22766522 | 22773042 | protein_coding | HGNC:8526 | 3.3869610 | 3.7032128 | 4.8673630 | 4.6431075 | 5.3151750 | 5.2177917 | 5.2177918 | 4.9694641 | 3.5537353 |
| ENSG00000183840 | -1.7146648 | -2.7429832 | 5.760923 | 8.644740 | 0.0075463 | 0.3178411 | ENSG00000183840 | GPR39 | G protein-coupled receptor 39 | 2 | 132416805 | 132646582 | protein_coding | HGNC:4496 | 4.8841966 | 6.3153986 | 2.7519189 | 4.6990095 | 4.2361668 | 3.0220789 | 3.0220789 | 4.1031089 | 5.7704396 |
| ENSG00000164692 | 2.5120841 | 1.3544465 | 12.339077 | 8.631842 | 0.0075505 | 0.3178411 | ENSG00000164692 | COL1A2 | collagen type I alpha 2 chain | 7 | 94394895 | 94431227 | protein_coding | HGNC:2198 | 9.0557982 | 7.1719427 | 10.4058781 | 10.8336342 | 11.2958216 | 9.6853324 | 9.6853324 | 10.8907014 | 8.4017154 |
| ENSG00000070495 | 0.9478971 | -1.5484153 | 4.787353 | 8.644911 | 0.0075548 | 0.3178411 | ENSG00000070495 | JMJD6 | jumonji domain containing 6, arginine demethylase and lysine hydroxylase | 17 | 76712832 | 76726799 | protein_coding | HGNC:19355 | 3.2507054 | 3.1844565 | 4.0948029 | 3.5037699 | 3.5808431 | 1.7227965 | 1.7227965 | 3.7511711 | 3.2179612 |
| ENSG00000136235 | 1.8209778 | 1.1722562 | 7.159510 | 8.626946 | 0.0075658 | 0.3178411 | ENSG00000136235 | GPNMB | glycoprotein nmb | 7 | 23235967 | 23275108 | protein_coding | HGNC:4462 | 5.0291233 | 3.9570420 | 6.0489696 | 6.7623986 | 6.2424117 | 5.8024183 | 5.8024184 | 6.3836086 | 4.5904565 |
| ENSG00000103196 | 2.5196750 | 1.4107902 | 6.051489 | 8.630481 | 0.0075777 | 0.3178411 | ENSG00000103196 | CRISPLD2 | cysteine rich secretory protein LCCL domain containing 2 | 16 | 84819985 | 84920768 | protein_coding | HGNC:25248 | 3.1456453 | 2.8679431 | 3.7294147 | 5.4701741 | 5.0010722 | 3.3612619 | 3.3612616 | 4.9007277 | 3.0134658 |
| ENSG00000231925 | 5.2799945 | 6.2131618 | 6.078774 | 8.270593 | 0.0075887 | 0.3178411 | ENSG00000231925 | TAPBP | TAP binding protein | 6 | 33299694 | 33314284 | protein_coding | HGNC:11566 | 1.0637735 | -13.2877124 | 5.9444599 | 0.9459373 | 4.5972238 | 5.4238913 | 5.4238913 | 4.8697772 | 0.0638425 |
| ENSG00000155760 | 2.3354955 | 0.3965506 | 4.750898 | 8.602519 | 0.0076906 | 0.3190376 | ENSG00000155760 | FZD7 | frizzled class receptor 7 | 2 | 202033855 | 202038441 | protein_coding | HGNC:4045 | 1.4305460 | 0.3947852 | 2.7020398 | 3.1928177 | 4.2199304 | 1.4896940 | 1.4896940 | 3.5145854 | 1.0036864 |
| ENSG00000184232 | 3.9540534 | 2.9413573 | 4.222890 | 8.141627 | 0.0077744 | 0.3190376 | ENSG00000184232 | OAF | out at first homolog | 11 | 120211032 | 120230334 | protein_coding | HGNC:28752 | 0.5822419 | -13.2877124 | 2.7797493 | 4.2563222 | 5.3627546 | 3.6963860 | 3.6963860 | 4.4838443 | -0.4176617 |
| ENSG00000120885 | -0.0757908 | 2.6162443 | 9.314702 | 8.544943 | 0.0077853 | 0.3190376 | ENSG00000120885 | CLU | clusterin | 8 | 27596917 | 27614700 | protein_coding | HGNC:2095 | 8.7217550 | 8.3809251 | 9.7077418 | 8.4009937 | 5.2899658 | 11.6660223 | 11.6660223 | 8.6598439 | 8.5613815 |
| ENSG00000121440 | 1.1676343 | -0.3027284 | 6.068769 | 8.537602 | 0.0078117 | 0.3190376 | ENSG00000121440 | PDZRN3 | PDZ domain containing ring finger 3 | 3 | 73382431 | 73624941 | protein_coding | HGNC:17704 | 3.8284742 | 3.2499892 | 4.4358884 | 5.2008153 | 4.8843534 | 3.4740414 | 3.4740414 | 4.8737807 | 3.5680345 |
| ENSG00000184047 | 1.3237223 | -2.5197452 | 4.079643 | 8.566909 | 0.0078219 | 0.3190376 | ENSG00000184047 | DIABLO | diablo IAP-binding mitochondrial protein | 12 | 122207668 | 122226062 | protein_coding | HGNC:21528 | 2.1106779 | 1.5023403 | 4.3350617 | 3.7725823 | 3.6011257 | -0.9814969 | -0.9814969 | 3.9381195 | 1.8383387 |
| ENSG00000158714 | -1.6702919 | -0.2937571 | 4.834561 | 8.553140 | 0.0078484 | 0.3190376 | ENSG00000158714 | SLAMF8 | SLAM family member 8 | 1 | 159826811 | 159837492 | protein_coding | HGNC:21391 | 3.5250310 | 3.9527684 | 2.4536638 | 2.4708981 | 1.0644207 | 3.5035998 | 3.5035998 | 2.1279934 | 3.7546942 |
| ENSG00000282367 | 3.7434263 | 3.7266551 | 3.668321 | 7.845984 | 0.0078779 | 0.3190376 | ENSG00000282367 | PTDSS2 | phosphatidylserine synthase 2 | HSCHR11_1_CTG8 | 3536 | 21040 | protein_coding | HGNC:15463 | -13.2877124 | 0.7052959 | 3.2182545 | 2.7034139 | 5.2992502 | 3.8174993 | 3.8174993 | 4.2015337 | -0.2946157 |
| ENSG00000120868 | -0.0065341 | -2.7535680 | 6.755042 | 8.508427 | 0.0078881 | 0.3190376 | ENSG00000120868 | APAF1 | apoptotic peptidase activating factor 1 | 12 | 98645149 | 98735433 | protein_coding | HGNC:576 | 4.7080411 | 5.9260650 | 4.8815621 | 5.1718719 | 6.4897166 | 1.9005059 | 1.9005059 | 5.6948184 | 5.4419501 |
| ENSG00000137801 | 1.2490877 | -1.7281518 | 10.692451 | 8.505790 | 0.0078935 | 0.3190376 | ENSG00000137801 | THBS1 | thrombospondin 1 | 15 | 39581079 | 39599466 | protein_coding | HGNC:11785 | 7.7937426 | 5.9782940 | 8.5761599 | 8.6797334 | 8.5179261 | 6.0191308 | 6.0191308 | 8.5928325 | 7.1545180 |
| ENSG00000097007 | 1.2115588 | 0.6893666 | 7.163707 | 8.503001 | 0.0079029 | 0.3190376 | ENSG00000097007 | ABL1 | ABL proto-oncogene 1, non-receptor tyrosine kinase | 9 | 130713043 | 130887675 | protein_coding | HGNC:76 | 5.0732506 | 3.7919137 | 4.9223429 | 5.0300211 | 5.8506567 | 4.5942027 | 4.5942028 | 5.3303458 | 4.5703919 |
| ENSG00000234507 | 5.9480928 | 9.2793374 | 4.257380 | 9.096056 | 0.0079605 | 0.3190376 | ENSG00000234507 | BRD2 | bromodomain containing 2 | HSCHR6_MHC_COX_CTG1 | 4380869 | 4393720 | protein_coding | HGNC:1103 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 3.1298905 | 5.2354273 | 5.2354273 | 1.5449611 | -13.2877124 |
| ENSG00000153132 | 1.3171710 | -1.3153845 | 4.300604 | 8.498753 | 0.0079967 | 0.3190376 | ENSG00000153132 | CLGN | calmegin | 4 | 140388453 | 140427661 | protein_coding | HGNC:2060 | 1.2795420 | 2.5293710 | 3.5752442 | 3.2838981 | 3.4487628 | 0.7178315 | 0.7178315 | 3.4408738 | 2.0357678 |
| ENSG00000112531 | 1.2990685 | 0.6102112 | 5.650951 | 8.468893 | 0.0080130 | 0.3190376 | ENSG00000112531 | QKI | QKI, KH domain containing RNA binding | 6 | 163414000 | 163578592 | protein_coding | HGNC:21100 | 4.1798207 | 4.3264283 | 6.0437524 | 5.6967415 | 5.9158122 | 5.2837215 | 5.2837214 | 5.8924697 | 4.2549863 |
| ENSG00000163814 | 1.0150892 | 2.8902595 | 3.562296 | 8.367851 | 0.0080458 | 0.3190376 | ENSG00000163814 | CDCP1 | CUB domain containing protein 1 | 3 | 45082277 | 45146422 | protein_coding | HGNC:24357 | 1.5812760 | 0.6957240 | 0.6187301 | 0.6506975 | -0.3547041 | 3.0279177 | 3.0279177 | 0.3738731 | 1.2054057 |
| ENSG00000185008 | -1.3988802 | -1.6499001 | 4.785187 | 8.470601 | 0.0080734 | 0.3190376 | ENSG00000185008 | ROBO2 | roundabout guidance receptor 2 | 3 | 75906695 | 77649964 | protein_coding | HGNC:10250 | 2.9529329 | 4.0608567 | 1.9931439 | 3.0732384 | 4.4897613 | 2.5897654 | 2.5897654 | 3.5387469 | 3.6107341 |
| ENSG00000173258 | -2.1850287 | -2.6539820 | 3.600994 | 8.208037 | 0.0080741 | 0.3190376 | ENSG00000173258 | ZNF483 | zinc finger protein 483 | 9 | 111525159 | 111577844 | protein_coding | HGNC:23384 | 2.3448151 | 3.1355168 | 0.2515325 | 1.0406049 | 0.1742300 | 0.3007868 | 0.3007868 | 0.5446249 | 2.7936714 |
| ENSG00000175920 | -1.4428158 | -0.5217291 | 5.066629 | 8.461356 | 0.0080932 | 0.3190376 | ENSG00000175920 | DOK7 | docking protein 7 | 4 | 3463306 | 3501473 | protein_coding | HGNC:26594 | 4.4193989 | 5.2302877 | 3.3374325 | 3.8949588 | 3.0868040 | 5.2527051 | 5.2527052 | 3.4802923 | 4.8810802 |
| ENSG00000196411 | 1.8001597 | 1.5432105 | 5.073963 | 8.453672 | 0.0080951 | 0.3190376 | ENSG00000196411 | EPHB4 | EPH receptor B4 | 7 | 100802565 | 100827523 | protein_coding | HGNC:3395 | 3.3608550 | 3.0747984 | 4.3794211 | 4.7120284 | 3.9550488 | 4.6937291 | 4.6937291 | 4.3815596 | 3.2249050 |
| ENSG00000229006 | 0.0000000 | 7.6035818 | 2.581606 | 11.328969 | 0.0081085 | 0.3190376 | ENSG00000229006 | TRIM27 | tripartite motif containing 27 | HSCHR6_MHC_SSTO_CTG1 | 212404 | 233381 | protein_coding | HGNC:9975 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 3.1245088 | 3.1245088 | -13.2877124 | -13.2877124 |
| ENSG00000072657 | 0.2271392 | 1.5628873 | 6.673650 | 8.426065 | 0.0081251 | 0.3190376 | ENSG00000072657 | TRHDE | thyrotropin releasing hormone degrading enzyme | 12 | 72087266 | 72670758 | protein_coding | HGNC:30748 | 2.8135553 | 2.3295628 | 3.1832774 | 3.1401736 | 2.3897989 | 4.2357068 | 4.2357068 | 2.9474060 | 2.5917605 |
| ENSG00000214562 | -0.9008437 | 0.8575698 | 5.355617 | 8.426646 | 0.0081744 | 0.3191768 | ENSG00000214562 | NUTM2D | NUT family member 2D | 10 | 87357720 | 87370695 | protein_coding | HGNC:23447 | 5.1836880 | 4.6169141 | 3.6438047 | 3.6239690 | 4.2796883 | 5.6041278 | 5.6041280 | 3.8826871 | 4.9279566 |
| ENSG00000137727 | 3.0254943 | 1.2968623 | 3.621382 | 8.138688 | 0.0081814 | 0.3191768 | ENSG00000137727 | ARHGAP20 | Rho GTPase activating protein 20 | 11 | 110577042 | 110713189 | protein_coding | HGNC:18357 | -1.9150486 | -1.3283081 | 3.0896241 | 0.5020240 | 1.9368663 | -0.1563071 | -0.1563071 | 2.1972021 | -1.5920534 |
| ENSG00000232653 | -2.2653301 | -0.6718703 | 4.108386 | 8.274100 | 0.0082049 | 0.3191768 | ENSG00000232653 | GOLGA8N | golgin A8 family member N | 15 | 32593456 | 32607310 | protein_coding | HGNC:44405 | 4.1079493 | 3.3303064 | 1.3561528 | 1.8656603 | 3.1601407 | 3.0269164 | 3.0269164 | 2.3356673 | 3.7709012 |
| ENSG00000276657 | 6.8220327 | 6.7777340 | 3.462158 | 9.053968 | 0.0082516 | 0.3198113 | ENSG00000276657 | PYCR3 | pyrroline-5-carboxylate reductase 3 | HSCHR8_3_CTG7 | 93953 | 99813 | protein_coding | HGNC:25846 | -13.2877124 | -13.2877124 | 3.3815370 | 1.0967200 | 2.9584932 | 2.6462200 | 2.6462200 | 2.7608332 | -13.2877124 |
| ENSG00000204950 | -1.6582192 | -0.0652654 | 5.477647 | 8.395776 | 0.0082721 | 0.3198113 | ENSG00000204950 | LRRC10B | leucine rich repeat containing 10B | 11 | 61508749 | 61511018 | protein_coding | HGNC:37215 | 5.2201983 | 4.3289092 | 3.7214358 | 3.3888889 | 2.5766605 | 4.8730183 | 4.8730183 | 3.3040839 | 4.8423154 |
| ENSG00000274334 | 9.2216031 | 0.0000000 | 5.279139 | 8.975021 | 0.0083594 | 0.3219020 | ENSG00000274334 | VASN | vasorin | HSCHR16_3_CTG1 | 74171 | 85851 | protein_coding | HGNC:18517 | -13.2877124 | -13.2877124 | -13.2877124 | 5.0947682 | 5.7235556 | -13.2877124 | -13.2877124 | 4.8581899 | -13.2877124 |
| ENSG00000102109 | -1.2147808 | -1.4493868 | 6.169402 | 8.338541 | 0.0083904 | 0.3219020 | ENSG00000102109 | PCSK1N | proprotein convertase subtilisin/kexin type 1 inhibitor | X | 48831096 | 48835610 | protein_coding | HGNC:17301 | 7.1618302 | 7.0396252 | 6.5641057 | 5.6670823 | 5.5857720 | 5.7198901 | 5.7198901 | 6.0109329 | 7.1020212 |
| ENSG00000129167 | -1.8569796 | -7.2735530 | 3.516488 | 8.185533 | 0.0084030 | 0.3219020 | ENSG00000129167 | TPH1 | tryptophan hydroxylase 1 | 11 | 18017555 | 18046269 | protein_coding | HGNC:12008 | 3.0864732 | 1.0149358 | 0.6208716 | -0.7621793 | -0.1827484 | -13.2877124 | -13.2877124 | 0.0040497 | 2.3943747 |
| ENSG00000146674 | 2.0598383 | 1.4042692 | 9.000774 | 8.302295 | 0.0084884 | 0.3220955 | ENSG00000146674 | IGFBP3 | insulin like growth factor binding protein 3 | 7 | 45912245 | 45921874 | protein_coding | HGNC:5472 | 6.7138242 | 5.3119325 | 7.7151404 | 8.8608191 | 8.4699451 | 7.7203526 | 7.7203526 | 8.4229317 | 6.1768529 |
| ENSG00000175497 | -2.4955429 | -0.0362775 | 4.352532 | 8.160525 | 0.0084969 | 0.3220955 | ENSG00000175497 | DPP10 | dipeptidyl peptidase like 10 | 2 | 114442299 | 115845780 | protein_coding | HGNC:20823 | 4.1465260 | 2.3058045 | 1.2339580 | 0.2646289 | 1.5814158 | 3.9887087 | 3.9887087 | 1.1256676 | 3.5017478 |
| ENSG00000156113 | -1.7094327 | -2.0008258 | 4.999288 | 8.313311 | 0.0085351 | 0.3220955 | ENSG00000156113 | KCNMA1 | potassium calcium-activated channel subfamily M alpha 1 | 10 | 76869601 | 77638369 | protein_coding | HGNC:6284 | 2.9899345 | 4.5051795 | 3.1285052 | 2.4459176 | 1.9748417 | 2.5054512 | 2.5054512 | 2.5949352 | 3.9379647 |
| ENSG00000132386 | 1.3343565 | 1.9861405 | 8.109443 | 8.277704 | 0.0085644 | 0.3220955 | ENSG00000132386 | SERPINF1 | serpin family F member 1 | 17 | 1762029 | 1777565 | protein_coding | HGNC:8824 | 8.0459464 | 7.1931549 | 8.9585823 | 8.7498725 | 8.7672408 | 9.2687472 | 9.2687471 | 8.8283758 | 7.6816657 |
| ENSG00000115738 | 1.0679820 | -0.5596402 | 5.547913 | 8.281619 | 0.0085661 | 0.3220955 | ENSG00000115738 | ID2 | inhibitor of DNA binding 2 | 2 | 8678845 | 8684461 | protein_coding | HGNC:5361 | 5.2774461 | 5.9939216 | 6.7307626 | 5.4948930 | 7.4567360 | 4.9934876 | 4.9934873 | 6.7680758 | 5.6797115 |
| ENSG00000148082 | 1.8236804 | 0.5809730 | 5.213023 | 8.287534 | 0.0085743 | 0.3220955 | ENSG00000148082 | SHC3 | SHC adaptor protein 3 | 9 | 89005771 | 89178818 | protein_coding | HGNC:18181 | 0.9012040 | -0.1449575 | 2.8092142 | 2.5404412 | 1.7718716 | 1.1454010 | 1.1454010 | 2.4366650 | 0.4709429 |
| ENSG00000161558 | -3.5954725 | -6.4096991 | 2.650444 | 7.208860 | 0.0085875 | 0.3220955 | ENSG00000161558 | TMEM143 | transmembrane protein 143 | 19 | 48332356 | 48364059 | protein_coding | HGNC:25603 | 3.5891461 | 3.9796707 | -13.2877124 | 1.9384653 | 2.3693118 | -13.2877124 | -13.2877124 | 1.5849663 | 3.7975823 |
| ENSG00000112773 | -1.1850244 | -0.1724907 | 6.495634 | 8.264664 | 0.0086136 | 0.3221119 | ENSG00000112773 | TENT5A | terminal nucleotidyltransferase 5A | 6 | 81491439 | 81752774 | protein_coding | HGNC:18345 | 4.4274467 | 4.5708165 | 3.7461020 | 3.2813282 | 2.8165528 | 4.3009655 | 4.3009657 | 3.3308122 | 4.5009117 |
| ENSG00000187498 | 1.3903107 | 2.0673741 | 8.220106 | 8.239059 | 0.0086845 | 0.3228828 | ENSG00000187498 | COL4A1 | collagen type IV alpha 1 chain | 13 | 110148963 | 110307202 | protein_coding | HGNC:2202 | 4.6516425 | 3.7481263 | 5.7809915 | 6.0945119 | 5.3467788 | 6.3278673 | 6.3278673 | 5.7727126 | 4.2694888 |
| ENSG00000178568 | -6.8014600 | -6.8014600 | 2.828783 | 9.739971 | 0.0086856 | 0.3228828 | ENSG00000178568 | ERBB4 | erb-b2 receptor tyrosine kinase 4 | 2 | 211375717 | 212538841 | protein_coding | HGNC:3432 | -0.3673428 | 1.0881552 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 0.5366637 |
| ENSG00000074276 | -0.8978472 | -1.3497908 | 6.124753 | 8.225750 | 0.0087360 | 0.3237999 | ENSG00000074276 | CDHR2 | cadherin related family member 2 | 5 | 176542511 | 176595974 | protein_coding | HGNC:18231 | 6.7140662 | 7.1555155 | 6.7000648 | 6.6265694 | 6.3077437 | 6.0870694 | 6.0870694 | 6.5545847 | 6.9516102 |
| ENSG00000008513 | 0.7890515 | -1.0454159 | 6.068149 | 8.209422 | 0.0087835 | 0.3239888 | ENSG00000008513 | ST3GAL1 | ST3 beta-galactoside alpha-2,3-sialyltransferase 1 | 8 | 133454848 | 133571926 | protein_coding | HGNC:10862 | 3.2564958 | 2.6352664 | 3.6090382 | 4.9639046 | 3.7113458 | 1.8446383 | 1.8446383 | 4.2354691 | 2.9790637 |
| ENSG00000100077 | -2.6285201 | -4.1567636 | 3.499673 | 7.776197 | 0.0087927 | 0.3239888 | ENSG00000100077 | GRK3 | G protein-coupled receptor kinase 3 | 22 | 25564675 | 25729294 | protein_coding | HGNC:290 | 0.4006538 | 1.6091748 | -1.6294518 | -0.5973258 | -13.2877124 | -1.3667269 | -1.3667269 | -1.6078088 | 1.1279234 |
| ENSG00000106624 | 1.8591048 | 0.9989620 | 6.608480 | 8.195312 | 0.0088284 | 0.3243547 | ENSG00000106624 | AEBP1 | AE binding protein 1 | 7 | 44104345 | 44114562 | protein_coding | HGNC:303 | 3.9146648 | 4.0825068 | 5.1704669 | 4.9004437 | 6.6771004 | 4.2447228 | 4.2447227 | 5.8091644 | 4.0010249 |
| ENSG00000070214 | 1.7168984 | 1.4999214 | 5.671570 | 8.171495 | 0.0089243 | 0.3255904 | ENSG00000070214 | SLC44A1 | solute carrier family 44 member 1 | 9 | 105244622 | 105439171 | protein_coding | HGNC:18798 | 2.0895076 | 3.2220029 | 2.7539149 | 3.0629423 | 5.2632637 | 3.2081898 | 3.2081898 | 4.1567285 | 2.7641383 |
| ENSG00000228960 | 3.2999762 | 1.6719793 | 5.930101 | 8.162357 | 0.0089823 | 0.3255904 | ENSG00000228960 | OR2A9P | 7 | 144299373 | 144300305 | transcribed_unprocessed_pseudogene | HGNC:8236 | 3.8781614 | -13.2877124 | 6.8994339 | 6.6081954 | 5.6560169 | 4.5093999 | 4.5093999 | 6.4776940 | 2.8781711 | |
| ENSG00000142871 | 2.3617214 | -0.0521812 | 7.536972 | 8.141172 | 0.0090001 | 0.3255904 | ENSG00000142871 | CCN1 | cellular communication network factor 1 | 1 | 85580761 | 85584589 | protein_coding | HGNC:2654 | 5.5012952 | 2.4580699 | 7.3050217 | 7.5212970 | 7.0220443 | 4.7641323 | 4.7641322 | 7.2971246 | 4.6664805 |
| ENSG00000213694 | 1.4819396 | 0.0000072 | 5.602657 | 8.144309 | 0.0090057 | 0.3255904 | ENSG00000213694 | S1PR3 | sphingosine-1-phosphate receptor 3 | 9 | 88990863 | 89005155 | protein_coding | HGNC:3167 | 2.5161675 | 2.6601437 | 4.2807533 | 3.2598079 | 4.0926772 | 1.9260457 | 1.9260457 | 3.9410241 | 2.5899509 |
| ENSG00000155252 | 1.0912842 | 0.6666540 | 6.500187 | 8.139407 | 0.0090080 | 0.3255904 | ENSG00000155252 | PI4K2A | phosphatidylinositol 4-kinase type 2 alpha | 10 | 97640671 | 97676434 | protein_coding | HGNC:30031 | 3.5570715 | 3.6824840 | 4.7310000 | 4.7624931 | 4.9581953 | 4.3442031 | 4.3442029 | 4.8207814 | 3.6211399 |
| ENSG00000148841 | 1.1129203 | -0.9624185 | 6.085731 | 8.137156 | 0.0090175 | 0.3255904 | ENSG00000148841 | ITPRIP | inositol 1,4,5-trisphosphate receptor interacting protein | 10 | 104309698 | 104338465 | protein_coding | HGNC:29370 | 3.1460708 | 2.7207292 | 3.9293271 | 3.9093185 | 5.0745749 | 2.2109137 | 2.2109137 | 4.4140901 | 2.9490186 |
| ENSG00000232632 | -3.1224349 | -8.3985884 | 4.290040 | 7.919610 | 0.0090922 | 0.3271474 | ENSG00000232632 | GABBR1 | gamma-aminobutyric acid type B receptor subunit 1 | HSCHR6_MHC_COX_CTG1 | 1042093 | 1119641 | protein_coding | HGNC:4070 | 3.1430479 | 3.5259625 | -13.2877124 | -13.2877124 | 2.1808296 | -13.2877124 | -13.2877124 | 0.5959304 | 3.3471720 |
| ENSG00000171298 | -0.7170919 | 0.5377297 | 7.820378 | 8.099094 | 0.0091383 | 0.3271474 | ENSG00000171298 | GAA | alpha glucosidase | 17 | 80101533 | 80119881 | protein_coding | HGNC:4065 | 6.6549946 | 6.6072208 | 6.5432613 | 6.2373712 | 5.7740603 | 7.2845047 | 7.2845047 | 6.2187372 | 6.6313054 |
| ENSG00000142197 | -0.8539536 | -1.4974633 | 5.727260 | 8.104171 | 0.0091388 | 0.3271474 | ENSG00000142197 | DOP1B | DOP1 leucine zipper like protein B | 21 | 36156782 | 36294274 | protein_coding | HGNC:1291 | 3.4026345 | 4.5444722 | 2.5357623 | 4.1995926 | 2.2629692 | 1.7623271 | 1.7623271 | 3.2716547 | 4.0836875 |
| ENSG00000110900 | -1.0575616 | 0.4237915 | 6.768321 | 8.091716 | 0.0091690 | 0.3272972 | ENSG00000110900 | TSPAN11 | tetraspanin 11 | 12 | 30926428 | 30996602 | protein_coding | HGNC:30795 | 4.0936006 | 5.3567977 | 4.0479572 | 4.5957492 | 3.3300498 | 5.3669852 | 5.3669852 | 4.0811513 | 4.8592500 |
| ENSG00000104936 | -0.9765887 | -0.1895446 | 7.195304 | 8.060884 | 0.0092687 | 0.3299200 | ENSG00000104936 | DMPK | DM1 protein kinase | 19 | 45769709 | 45782552 | protein_coding | HGNC:2933 | 6.1931104 | 6.4788247 | 5.7517284 | 5.3115344 | 5.3189654 | 6.1650997 | 6.1650997 | 5.4758706 | 6.3430290 |
| ENSG00000148143 | 0.7269259 | -0.5883770 | 6.355541 | 8.029504 | 0.0093772 | 0.3321646 | ENSG00000148143 | ZNF462 | zinc finger protein 462 | 9 | 106863166 | 107013634 | protein_coding | HGNC:21684 | 4.1168643 | 2.7774671 | 3.4617204 | 3.6264283 | 3.4048557 | 3.0009048 | 3.0009048 | 3.5007606 | 3.5973215 |
| ENSG00000242511 | -6.7704463 | -6.7704463 | 2.807107 | 9.454260 | 0.0093993 | 0.3321646 | ENSG00000242511 | RPL23AP1 | HSCHR6_MHC_SSTO_CTG1 | 1032898 | 1033368 | transcribed_processed_pseudogene | HGNC:10318 | -13.2877124 | 7.0585888 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 6.0585899 | |
| ENSG00000185624 | 1.0099956 | 1.3008021 | 8.851348 | 8.017157 | 0.0094161 | 0.3321646 | ENSG00000185624 | P4HB | prolyl 4-hydroxylase subunit beta | 17 | 81843159 | 81860856 | protein_coding | HGNC:8548 | 7.2975634 | 6.9117810 | 8.2136506 | 8.1177841 | 8.1898927 | 8.5283039 | 8.5283041 | 8.1743485 | 7.1175288 |
| ENSG00000273686 | -2.1186070 | -1.6016561 | 8.423470 | 8.005088 | 0.0094588 | 0.3321646 | ENSG00000273686 | B2M | beta-2-microglobulin | HSCHR15_3_CTG8 | 34826 | 42225 | protein_coding | HGNC:914 | 9.0142582 | 11.3939102 | 9.3099702 | 8.4917397 | 8.3565842 | 9.1161840 | 9.1161841 | 8.7840557 | 10.6474829 |
| ENSG00000078687 | -1.7831153 | -1.0031677 | 4.433800 | 8.020536 | 0.0094640 | 0.3321646 | ENSG00000078687 | TNRC6C | trinucleotide repeat containing adaptor 6C | 17 | 77958703 | 78108822 | protein_coding | HGNC:29318 | 2.7356002 | 2.3130900 | 0.6626576 | 2.1062599 | 3.2395817 | 1.1691939 | 1.1691939 | 2.3536934 | 2.5397574 |
| ENSG00000139352 | -0.7771320 | 0.1265148 | 10.252700 | 7.960614 | 0.0096142 | 0.3356249 | ENSG00000139352 | ASCL1 | achaete-scute family bHLH transcription factor 1 | 12 | 102957674 | 102960513 | protein_coding | HGNC:738 | 9.2544235 | 9.2809293 | 8.6832022 | 8.5855829 | 8.5419974 | 9.4552502 | 9.4552502 | 8.6048089 | 9.2677373 |
| ENSG00000269955 | -6.7602478 | -6.7602478 | 2.799974 | 9.359545 | 0.0096523 | 0.3356249 | ENSG00000269955 | FMC1-LUC7L2 | FMC1-LUC7L2 readthrough | 7 | 139341360 | 139422599 | protein_coding | HGNC:44671 | -13.2877124 | 4.2350405 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | -13.2877124 | 3.2350481 |
| ENSG00000232439 | -1.5476975 | -0.1185244 | 4.421783 | 7.951555 | 0.0097080 | 0.3356249 | ENSG00000232439 | RPL18AP7 | 3 | 38526802 | 38527325 | processed_pseudogene | HGNC:35607 | 6.5845319 | 6.8820318 | 5.1945903 | 5.3543659 | 5.4273159 | 6.6855828 | 6.6855828 | 5.3286649 | 6.7409367 | |
| ENSG00000170801 | 2.8616262 | 2.1326436 | 4.923599 | 7.928393 | 0.0097592 | 0.3356249 | ENSG00000170801 | HTRA3 | HtrA serine peptidase 3 | 4 | 8269754 | 8307098 | protein_coding | HGNC:30406 | 1.9785563 | -0.5262256 | 3.1752317 | 4.8742770 | 4.3874272 | 3.4946586 | 3.4946586 | 4.3047917 | 1.2126795 |
| ENSG00000072195 | -1.3718970 | -1.5935148 | 4.746188 | 7.943936 | 0.0097666 | 0.3356249 | ENSG00000072195 | SPEG | striated muscle enriched protein kinase | 2 | 219434843 | 219493629 | protein_coding | HGNC:16901 | 2.1759138 | 3.7493855 | 3.7907817 | 3.9196031 | 2.5112077 | 0.7453793 | 0.7453793 | 3.5308125 | 3.1673043 |
| ENSG00000196562 | 2.2624293 | 2.4109172 | 7.798095 | 7.918125 | 0.0097687 | 0.3356249 | ENSG00000196562 | SULF2 | sulfatase 2 | 20 | 47656197 | 47786616 | protein_coding | HGNC:20392 | 4.9355765 | 3.3663151 | 5.6392349 | 7.3069101 | 6.9941930 | 7.0507912 | 7.0507913 | 6.8059330 | 4.3545551 |
| ENSG00000130940 | -1.6139825 | -0.1835508 | 5.474095 | 7.929285 | 0.0097930 | 0.3356249 | ENSG00000130940 | CASZ1 | castor zinc finger 1 | 1 | 10636604 | 10796650 | protein_coding | HGNC:26002 | 4.1616572 | 5.3470356 | 2.5788103 | 2.5098443 | 0.8418773 | 2.9506819 | 2.9506819 | 2.1659049 | 4.8728131 |
| ENSG00000218475 | -1.2466235 | -0.3458774 | 5.847177 | 7.917251 | 0.0097983 | 0.3356249 | ENSG00000218475 | ACTG1P18 | 6 | 101430411 | 101431553 | processed_pseudogene | HGNC:51498 | 5.9501242 | 6.8159376 | 5.3892835 | 5.0132667 | 5.4310758 | 6.1288211 | 6.1288211 | 5.2897242 | 6.4470297 | |
| ENSG00000213222 | 1.4327415 | 0.2999752 | 6.814995 | 7.902044 | 0.0098280 | 0.3356249 | ENSG00000213222 | TOMM40P4 | 2 | 131723253 | 131724279 | processed_pseudogene | HGNC:54633 | 6.5417759 | 5.4559897 | 7.4973892 | 7.8067829 | 7.7645718 | 6.5050878 | 6.5050878 | 7.6959430 | 6.0987059 | |
| ENSG00000169122 | 1.7285734 | 0.3191359 | 5.237063 | 7.906492 | 0.0098485 | 0.3356249 | ENSG00000169122 | FAM110B | family with sequence similarity 110 member B | 8 | 57994523 | 58204279 | protein_coding | HGNC:28587 | 2.6109776 | 2.9508672 | 4.6142961 | 4.3541932 | 4.3683504 | 2.5962995 | 2.5962995 | 4.4506464 | 2.7909088 |
| ENSG00000128641 | 1.5962314 | 0.4494822 | 5.834767 | 7.891755 | 0.0098779 | 0.3356249 | ENSG00000128641 | MYO1B | myosin IB | 2 | 191245185 | 191425389 | protein_coding | HGNC:7596 | 3.2404780 | 1.7245372 | 3.7453523 | 4.4336761 | 4.1705278 | 3.1374929 | 3.1374929 | 4.1437559 | 2.6730831 |
| ENSG00000137693 | 1.9157391 | 1.3870228 | 4.683162 | 7.909298 | 0.0098831 | 0.3356249 | ENSG00000137693 | YAP1 | Yes1 associated transcriptional regulator | 11 | 102110447 | 102233424 | protein_coding | HGNC:16262 | 2.4513454 | 2.0604943 | 3.5679193 | 2.8411264 | 3.9158419 | 3.0323691 | 3.0323691 | 3.5075081 | 2.2691158 |
| ENSG00000184545 | 6.2713213 | 0.0000000 | 2.707484 | 8.441158 | 0.0099832 | 0.3381090 | ENSG00000184545 | DUSP8 | dual specificity phosphatase 8 | 11 | 1554051 | 1572271 | protein_coding | HGNC:3074 | -13.2877124 | -13.2877124 | 1.4001018 | 0.9260207 | 0.9960611 | -13.2877124 | -13.2877124 | 1.1229549 | -13.2877124 |
outPath = "output/day28/DEG"
Test = "day28.SCN2A.vs.WT"
qlf = glmQLFTest(fit, coef=2)
sig.gene.summary(qlf)
## q0.005 q0.01 q0.05 q0.2 p0.01
## Down 0 0 1 86 190
## NotSig 12565 12565 12560 12294 12056
## Up 0 0 4 185 319
deg = attach_annotations_by_p(qlf, 0.01)
maxAveTPM = data.frame(maxAveTPM = apply(deg[,c("SCN2A", "WT")], 1, max))
deg = cbind(deg, maxAveTPM)
# deg %>%
# kbl() %>%
# kable_styling(bootstrap_options = c("striped", "hover", "condensed")) %>%
# scroll_box(width = "100%", height = "300px")
write.table(deg, file=paste(outPath,ExperimentName,Test,"txt", sep="."), quote=FALSE, row.names=TRUE, col.names=TRUE, sep="\t")
#MvsA plot
ggplot(data = as.data.frame(topTags(qlf, n=NULL)) %>% arrange(desc(PValue)), aes(x=logCPM, y=logFC)) +
geom_point(aes(color=PValue<0.01)) +
scale_color_manual(values = xgfs_normal12[c(13,2)]) +
theme_minimal()
#Volcano plot
ggplot(data = as.data.frame(topTags(qlf, n=NULL)) %>% arrange(desc(PValue)), aes(x=logFC, y=-log10(PValue))) +
geom_point(aes(color=PValue<0.01)) +
scale_color_manual(values = xgfs_normal12[c(13,2)]) +
theme_minimal()
SCN2AUp = row.names(deg[deg[,"logFC"] > 0 & deg[,"maxAveTPM"] > log2(0.1),])
SCN2ADown = row.names(deg[deg[,"logFC"] < 0 & deg[,"maxAveTPM"] > log2(0.1),])
Test = "day28.CHD2.vs.WT"
qlf = glmQLFTest(fit, coef=3)
sig.gene.summary(qlf)
## q0.005 q0.01 q0.05 q0.2 p0.01
## Down 0 0 0 2 78
## NotSig 12565 12565 12565 12558 12386
## Up 0 0 0 5 101
deg = attach_annotations_by_p(qlf, 0.01)
maxAveTPM = data.frame(maxAveTPM = apply(deg[,c("CHD2", "WT")], 1, max))
deg = cbind(deg, maxAveTPM)
# deg %>%
# kbl() %>%
# kable_styling(bootstrap_options = c("striped", "hover", "condensed")) %>%
# scroll_box(width = "100%", height = "300px")
write.table(deg, file=paste(outPath,ExperimentName,Test,"txt", sep="."), quote=FALSE, row.names=TRUE, col.names=TRUE, sep="\t")
#MvsA plot
ggplot(data = as.data.frame(topTags(qlf, n=NULL)) %>% arrange(desc(PValue)), aes(x=logCPM, y=logFC)) +
geom_point(aes(color=PValue<0.01)) +
scale_color_manual(values = xgfs_normal12[c(13,2)]) +
theme_minimal()
#Volcano plot
ggplot(data = as.data.frame(topTags(qlf, n=NULL)) %>% arrange(desc(PValue)), aes(x=logFC, y=-log10(PValue))) +
geom_point(aes(color=PValue<0.01)) +
scale_color_manual(values = xgfs_normal12[c(13,2)]) +
theme_minimal()
CHD2Up = row.names(deg[deg[,"logFC"] > 0 & deg[,"maxAveTPM"] > log2(0.1),])
CHD2Down = row.names(deg[deg[,"logFC"] < 0 & deg[,"maxAveTPM"] > log2(0.1),])
Test = "day28"
venn.diagram(list(CHD2 = CHD2Up, SCN2A = SCN2AUp), filename = paste(outPath,ExperimentName,Test,"up.png", sep="."), imagetype = "png", main = paste(Test, "up regulated", sep = " "), col = xgfs_normal12[1:2])
## [1] 1
venn.diagram(list(CHD2 = CHD2Down, SCN2A = SCN2ADown), filename = paste(outPath,ExperimentName,Test,"down.png", sep="."), imagetype = "png", main = paste(Test, "down regulated", sep = " "), col = xgfs_normal12[1:2])
## [1] 1
SCN2AUp.d28 = SCN2AUp
SCN2ADown.d28 = SCN2ADown
CHD2Up.d28 = CHD2Up
CHD2Down.d28 = CHD2Down
Note:
Take the DEGs from each timepoint and examine the overlaps
outPath = "output/misc/DEG"
Test = "SCN2A"
venn.diagram(list(
FB = c(SCN2AUp.FB, SCN2ADown.FB),
day_10 = c(SCN2AUp.d10, SCN2ADown.d10),
day_22 = c(SCN2AUp.d22, SCN2ADown.d22),
day_28 = c(SCN2AUp.d28, SCN2ADown.d28)),
filename = paste(outPath,ExperimentName,Test,"png", sep="."),
imagetype = "png", main = paste(Test, "DEGs per differentiation stage", sep = " "),
col = xgfs_normal12[c(4,6,7,9)])
## [1] 1
Test = "CHD2"
venn.diagram(list(
FB = c(CHD2Up.FB, CHD2Down.FB),
day_10 = c(CHD2Up.d10, CHD2Down.d10),
day_22 = c(CHD2Up.d22, CHD2Down.d22),
day_28 = c(CHD2Up.d28, CHD2Down.d28)),
filename = paste(outPath,ExperimentName,Test,"png", sep="."),
imagetype = "png", main = paste(Test, "DEGs per differentiation stage", sep = " "),
col = xgfs_normal12[c(4,6,7,9)])
## [1] 1
# Stats
hypergeometric.tests = rbind(
SCN2A.FBvd10 = hypergeometric_test_of_lists(union(FB.genes.expressed,d10.genes.expressed),c(SCN2AUp.FB, SCN2ADown.FB),c(SCN2AUp.d10, SCN2ADown.d10)),
SCN2A.FBvd22 = hypergeometric_test_of_lists(union(FB.genes.expressed,d22.genes.expressed),c(SCN2AUp.FB, SCN2ADown.FB),c(SCN2AUp.d22, SCN2ADown.d22)),
SCN2A.FBvd28 = hypergeometric_test_of_lists(union(FB.genes.expressed,d28.genes.expressed),c(SCN2AUp.d28, SCN2ADown.d28),c(SCN2AUp.FB, SCN2ADown.FB)),
SCN2A.d10vd22 = hypergeometric_test_of_lists(union(d22.genes.expressed,d10.genes.expressed),c(SCN2AUp.d22, SCN2ADown.d22),c(SCN2AUp.d10, SCN2ADown.d10)),
SCN2A.d10vd28 = hypergeometric_test_of_lists(union(d28.genes.expressed,d10.genes.expressed),c(SCN2AUp.d28, SCN2ADown.d28),c(SCN2AUp.d10, SCN2ADown.d10)),
SCN2A.d22vd28 = hypergeometric_test_of_lists(union(d28.genes.expressed,d22.genes.expressed),c(SCN2AUp.d28, SCN2ADown.d28),c(SCN2AUp.d22, SCN2ADown.d22)),
CHD2.FBvd10 = hypergeometric_test_of_lists(union(FB.genes.expressed,d10.genes.expressed),c(CHD2Up.FB, CHD2Down.FB),c(CHD2Up.d10, CHD2Down.d10)),
CHD2.FBvd22 = hypergeometric_test_of_lists(union(FB.genes.expressed,d22.genes.expressed),c(CHD2Up.FB, CHD2Down.FB),c(CHD2Up.d22, CHD2Down.d22)),
CHD2.FBvd28 = hypergeometric_test_of_lists(union(FB.genes.expressed,d28.genes.expressed),c(CHD2Up.d28, CHD2Down.d28),c(CHD2Up.FB, CHD2Down.FB)),
CHD2.d10vd22 = hypergeometric_test_of_lists(union(d22.genes.expressed,d10.genes.expressed),c(CHD2Up.d22, CHD2Down.d22),c(CHD2Up.d10, CHD2Down.d10)),
CHD2.d10vd28 = hypergeometric_test_of_lists(union(d28.genes.expressed,d10.genes.expressed),c(CHD2Up.d28, CHD2Down.d28),c(CHD2Up.d10, CHD2Down.d10)),
CHD2.d22vd28 = hypergeometric_test_of_lists(union(d28.genes.expressed,d22.genes.expressed),c(CHD2Up.d28, CHD2Down.d28),c(CHD2Up.d22, CHD2Down.d22)))
hypergeometric.tests %>%
kbl() %>%
kable_styling(bootstrap_options = c("striped", "hover", "condensed")) %>%
scroll_box(width = "100%", height = "300px")
| total.genes | list.1 | list.2 | intersection | PValue | |
|---|---|---|---|---|---|
| SCN2A.FBvd10 | 14404 | 402 | 144 | 12 | 0.0007132 |
| SCN2A.FBvd22 | 13458 | 402 | 200 | 13 | 0.0071271 |
| SCN2A.FBvd28 | 14169 | 509 | 402 | 33 | 0.0000088 |
| SCN2A.d10vd22 | 13543 | 200 | 144 | 12 | 0.0000015 |
| SCN2A.d10vd28 | 14088 | 509 | 144 | 16 | 0.0000644 |
| SCN2A.d22vd28 | 12792 | 509 | 200 | 53 | 0.0000000 |
| CHD2.FBvd10 | 14404 | 195 | 271 | 5 | 0.3056768 |
| CHD2.FBvd22 | 13458 | 195 | 182 | 8 | 0.0050461 |
| CHD2.FBvd28 | 14169 | 179 | 195 | 7 | 0.0119882 |
| CHD2.d10vd22 | 13543 | 182 | 271 | 43 | 0.0000000 |
| CHD2.d10vd28 | 14088 | 179 | 271 | 21 | 0.0000000 |
| CHD2.d22vd28 | 12792 | 179 | 182 | 23 | 0.0000000 |
Note: The low numbers of genes showing consistent differential expression between iNeuron time points is of potential concern. In the day
Generate heat map for wild-type genotype cell lines based on the Genes4Epilepsy list
DEEMatrix = gene.TPM[ match(DEE_List,row.names(gene.TPM)) , colnames(gene.TPM) %in% WTsamples]
#ensembl = useMart("ensembl",dataset="hsapiens_gene_ensembl")
Annotations = getBM(attributes = c('hgnc_symbol','ensembl_gene_id'),
filters = 'ensembl_gene_id',
values = DEE_List,
mart = ensembl)
Annotations = left_join(data.frame(ensembl_gene_id = DEE_List), Annotations, by="ensembl_gene_id")
row.names(DEEMatrix) <- Annotations$hgnc_symbol
pheatmap(log2(DEEMatrix + 0.0001), color = colorRampPalette(rev(brewer.pal(n = 7, name ="RdBu"))) (100),
angle_col = 90, cluster_cols = TRUE, cluster_rows = FALSE,
main = "Expression (log2 TPM)")
png(filename=paste("output/misc/DEE",ExperimentName,"heatmap","png", sep="."), height=9130, width=980, bg="white")
pheatmap(log2(DEEMatrix + 0.0001), color = colorRampPalette(rev(brewer.pal(n = 7, name ="RdBu"))) (100),
angle_col = 90, cluster_cols = TRUE, cluster_rows = FALSE,
main = "Expression (log2 TPM)")
dev.off()
## png
## 3
DEEMatrix = gene.TPM[ match(DEE_biobank_list$ensembl_gene_id,row.names(gene.TPM)), colnames(gene.TPM) %in% WTsamples]
ensembl = useMart("ensembl",dataset="hsapiens_gene_ensembl")
Annotations = getBM(attributes = c('hgnc_symbol','ensembl_gene_id'),
filters = 'ensembl_gene_id',
values = DEE_biobank_list$ensembl_gene_id,
mart = ensembl)
Annotations = left_join(DEE_biobank_list, Annotations, by="ensembl_gene_id")
row.names(DEEMatrix) <- Annotations$hgnc_symbol
pheatmap(log2(DEEMatrix + 0.0001), color = colorRampPalette(rev(brewer.pal(n = 7, name ="RdBu"))) (100),
angle_col = 90, cluster_cols = TRUE, cluster_rows = FALSE,
main = "Expression (log2 TPM)")
png(filename=paste("output/misc/DEE_biobank",ExperimentName,"heatmap","png", sep="."), height=1500, width=980, bg="white")
pheatmap(log2(DEEMatrix + 0.0001), color = colorRampPalette(rev(brewer.pal(n = 7, name ="RdBu"))) (100),
angle_col = 90, cluster_cols = TRUE, cluster_rows = TRUE,
main = "Expression (log2 TPM)", fontsize = 16)
dev.off()
## png
## 3
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This information documents the computing environment used to do this analysis to enable others to replicate these findings.
sessionInfo()
## R version 4.4.1 (2024-06-14 ucrt)
## Platform: x86_64-w64-mingw32/x64
## Running under: Windows 10 x64 (build 19045)
##
## Matrix products: default
##
##
## locale:
## [1] LC_COLLATE=English_Australia.utf8 LC_CTYPE=English_Australia.utf8 LC_MONETARY=English_Australia.utf8 LC_NUMERIC=C
## [5] LC_TIME=English_Australia.utf8
##
## time zone: Australia/Adelaide
## tzcode source: internal
##
## attached base packages:
## [1] grid stats4 stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] biomaRt_2.60.1 rtracklayer_1.64.0 VennDiagram_1.7.3 futile.logger_1.4.3 pheatmap_1.0.12
## [6] ggplot2_3.5.1 RColorBrewer_1.1-3 edgeR_4.2.1 limma_3.60.4 SummarizedExperiment_1.34.0
## [11] Biobase_2.64.0 GenomicRanges_1.56.1 GenomeInfoDb_1.40.1 IRanges_2.38.1 S4Vectors_0.42.1
## [16] BiocGenerics_0.50.0 MatrixGenerics_1.16.0 matrixStats_1.4.1 tximeta_1.22.1 reshape2_1.4.4
## [21] dplyr_1.1.4 kableExtra_1.4.0 rgl_1.3.1
##
## loaded via a namespace (and not attached):
## [1] rstudioapi_0.16.0 jsonlite_1.8.8 tximport_1.32.0 magrittr_2.0.3 GenomicFeatures_1.56.0
## [6] farver_2.1.2 rmarkdown_2.28 BiocIO_1.14.0 zlibbioc_1.50.0 vctrs_0.6.5
## [11] memoise_2.0.1 Rsamtools_2.20.0 RCurl_1.98-1.16 base64enc_0.1-3 htmltools_0.5.8.1
## [16] S4Arrays_1.4.1 progress_1.2.3 AnnotationHub_3.12.0 lambda.r_1.2.4 curl_5.2.2
## [21] SparseArray_1.4.8 sass_0.4.9 bslib_0.8.0 htmlwidgets_1.6.4 plyr_1.8.9
## [26] httr2_1.0.4 futile.options_1.0.1 cachem_1.1.0 GenomicAlignments_1.40.0 lifecycle_1.0.4
## [31] pkgconfig_2.0.3 Matrix_1.7-0 R6_2.5.1 fastmap_1.2.0 GenomeInfoDbData_1.2.12
## [36] digest_0.6.37 colorspace_2.1-1 AnnotationDbi_1.66.0 RSQLite_2.3.7 labeling_0.4.3
## [41] filelock_1.0.3 fansi_1.0.6 httr_1.4.7 abind_1.4-8 compiler_4.4.1
## [46] bit64_4.0.5 withr_3.0.1 BiocParallel_1.38.0 DBI_1.2.3 highr_0.11
## [51] Rttf2pt1_1.3.12 rappdirs_0.3.3 DelayedArray_0.30.1 rjson_0.2.23 tools_4.4.1
## [56] extrafontdb_1.0 glue_1.7.0 restfulr_0.0.15 generics_0.1.3 gtable_0.3.5
## [61] tzdb_0.4.0 ensembldb_2.28.1 hms_1.1.3 xml2_1.3.6 utf8_1.2.4
## [66] XVector_0.44.0 BiocVersion_3.19.1 pillar_1.9.0 stringr_1.5.1 vroom_1.6.5
## [71] splines_4.4.1 BiocFileCache_2.12.0 lattice_0.22-6 bit_4.0.5 tidyselect_1.2.1
## [76] locfit_1.5-9.10 Biostrings_2.72.1 knitr_1.48 ProtGenerics_1.36.0 svglite_2.1.3
## [81] xfun_0.47 statmod_1.5.0 stringi_1.8.4 UCSC.utils_1.0.0 lazyeval_0.2.2
## [86] yaml_2.3.10 evaluate_1.0.0 codetools_0.2-20 extrafont_0.19 tibble_3.2.1
## [91] BiocManager_1.30.25 cli_3.6.3 systemfonts_1.1.0 jquerylib_0.1.4 munsell_0.5.1
## [96] Rcpp_1.0.13 dbplyr_2.5.0 png_0.1-8 XML_3.99-0.17 parallel_4.4.1
## [101] readr_2.1.5 blob_1.2.4 prettyunits_1.2.0 AnnotationFilter_1.28.0 bitops_1.0-8
## [106] txdbmaker_1.0.1 viridisLite_0.4.2 scales_1.3.0 purrr_1.0.2 crayon_1.5.3
## [111] rlang_1.1.4 formatR_1.14 KEGGREST_1.44.1